Search for the best oligonucleotides according to the degree of conservation in specific sequence alignments

The table describes for each oligonucleotide different measures of sequence conservation for Alig01 and Alig02 alignments used in the database:
-PIS: percentage of identical sites
-3'PIS: percentage of identical sites in the last five nucleotides at the 3' end of oligonucleotide
-PPI: percentage of pairwise identity
-CoV2ID score: mean value of PIS, 3'PIS and PPI
-POS: Position in alignment.

							Alig01		Alig02
Database reference	Target	Original name	Sequence (5-3)	Position in reference genome	Genomic region	Sequence in reference genome	POS	CoV2ID score	POS	CoV2ID score	Detection protocols
Database reference	Target	Original name	Sequence (5-3)	Position in reference genome	Genomic region	Sequence in reference genome	POS	CoV2ID score	POS	CoV2ID score	Detection protocols
CoV2ID001 Raw data Min-max	PCR primer forward	China_CDC_Meta1_F	CCCTGTGGGTTTTACACTTAA	13342-13362	ORF1ab	CCCTGTGGGTTTTACACTTAA	4349-4358	100.00	4510-4519	100.00	1
CoV2ID002 Raw data Min-max	PCR primer reverse	China_CDC_Meta1_R	ACGATTGTGCATCAGCTGA	13442-13460	ORF1ab	TCAGCTGATGCACAATCGT	13492-13510	89.76	14294-14312	100.00	1
CoV2ID003 Raw data Min-max	Probe	China_CDC_Meta1_P	CCGTCTGCGGTATGTGGAAAGGTTATGG	13377-13404	ORF1ab	CCGTCTGCGGTATGTGGAAAGGTTATGG	13427-13454	97.58	14229-14256	90.92	1
CoV2ID004 Raw data Min-max	PCR primer forward	China_CDC_Meta2_F	GGGGAACTTCTCCTGCTAGAAT	28881-28902	N	GGGGAACTTCTCCTGCTAGAAT	28952-28973	100.00	31163-31184	73.98	1
CoV2ID005 Raw data Min-max	PCR primer reverse	China_CDC_Meta2_R	CAGACATTTTGCTCTCAAGCTG	28958-28979	N	CAGCTTGAGAGCAAAATGTCTG	29029-29050	100.00	31240-31261	93.93	1
CoV2ID006 Raw data Min-max	Probe	China_CDC_Meta2_P	TTGCTGCTGCTTGACAGATT	28934-28953	N	TTGCTGCTGCTTGACAGATT	29005-29024	100.00	31216-31235	100.00	1
CoV2ID007 Raw data Min-max	PCR primer forward	Charite_RdRP_SARSr-F2	GTGARATGGTCATGTGTGGCGG	15431-15452	ORF1ab	GTGAAATGGTCATGTGTGGCGG	15481-15502	100.00	16285-16306	90.30	2
CoV2ID008 Raw data Min-max	PCR primer reverse	Charite_RdRP_SARSr-R1	CARATGTTAAASACACTATTAGCATA	15505-15530	ORF1ab	TATGCTAATAGTGTTTTTAACATTTG	15555-15580	100.00	16359-16384	100.00	2
CoV2ID009 Raw data Min-max	Probe	Charite_RdRP_SARSr-P2	CAGGTGGAACCTCATCAGGAGATGC	15470-15494	ORF1ab	CAGGTGGAACCTCATCAGGAGATGC	15520-15544	100.00	16324-16348	97.33	2
CoV2ID010 Raw data Min-max	Probe	Charite_RdRP_SARSr-P1	CCAGGTGGWACRTCATCMGGTGATGC	15469-15494	ORF1ab	CCAGGTGGAACCTCATCAGGAGATGC	15519-15544	100.00	16323-16348	97.44	2
CoV2ID011 Raw data Min-max	PCR primer forward	Charite_E_Sarbeco_F1	ACAGGTACGTTAATAGTTAATAGCGT	26269-26294	E	ACAGGTACGTTAATAGTTAATAGCGT	26340-26365	100.00	28077-28102	97.44	2
CoV2ID012 Raw data Min-max	PCR primer reverse	Charite_E_Sarbeco_R2	ATATTGCAGCAGTACGCACACA	26360-26381	E	TGTGTGCGTACTGCTGCAATAT	26431-26452	100.00	28168-28189	98.48	2
CoV2ID013 Raw data Min-max	Probe	Charite_E_Sarbeco_P1	ACACTAGCCATCCTTACTGCGCTTCG	26332-26357	E	ACACTAGCCATCCTTACTGCGCTTCG	26403-26428	92.03	28140-28165	81.54	2
CoV2ID014 Raw data Min-max	PCR primer forward	HKU-ORF1b-nsp14F	TGGGGYTTTACRGGTAACCT	18778-18797	ORF1ab	TGGGGTTTTACAGGTAACCT	18841-18860	32.70	20000-20019	89.99	3
CoV2ID015 Raw data Min-max	PCR primer reverse	HKU- ORF1b-nsp14R	AACRCGCTTAACAAAGCACTC	18889-18909	ORF1b-nsp15	GAGTGCTTTGTTAAGCGTGTT	18952-18972	32.70	20111-20131	93.65	3
CoV2ID016 Raw data Min-max	Probe	HKU-ORF1b-nsp141P	TAGTTGTGATGCWATCATGACTAG	18849-18872	ORF1b-nsp16	TAGTTGTGATGCAATCATGACTAG	18912-18935	32.70	20071-20094	98.61	3
CoV2ID017 Raw data Min-max	PCR primer forward	HKU-NF	TAATCAGACAAGGAACTGATTA	29145-29166	N	TAATCAGACAAGGAACTGATTA	29216-29237	100.00	31428-31449	98.47	3
CoV2ID018 Raw data Min-max	PCR primer reverse	HKU-NR	CGAAGGTGTGACTTCCATG	29236-29254	N	CATGGAAGTCACACCTTCG	29307-29325	100.00	31519-31537	77.88	3
CoV2ID019 Raw data Min-max	Probe	HKU-NP	GCAAATTGTGCAATTTGCGG	29177-29196	N	CCGCAAATTGCACAATTTGC	29248-29267	100.00	31460-31479	96.66	3
CoV2ID020 Raw data Min-max	PCR primer forward	WH-NIC N-F	CGTTTGGTGGACCCTCAGAT	28320-28339	N	CGTTTGGTGGACCCTCAGAT	28391-28410	100.00	30447-30466	95.00	4
CoV2ID021 Raw data Min-max	PCR primer reverse	WH-NIC N-R	CCCCACTGCGTTCTCCATT	28358-28376	N	AATGGAGAACGCAGTGGGG	28429-28447	98.21	30485-30503	92.98	4
CoV2ID022 Raw data Min-max	Probe	WH-NIC N-P	CAACTGGCAGTAACCA	28341-28356	N	CAACTGGCAGTAACCA	28412-28427	100.00	30468-30483	97.91	4
CoV2ID023 Raw data Min-max	PCR primer forward	NIID_WH-1_F501	TTCGGATGCTCGAACTGCACC	484-504	ORF1ab	TTCGGATGCTCGAACTGCACC	496-516	32.65	640-660	96.79	5
CoV2ID024 Raw data Min-max	PCR primer reverse	NIID_WH-1_R913	CTTTACCAGCACGTGCTAGAAGG	874-896	ORF1ab	CCTTCTAGCACGTGCTGGTAAAG	886-908	100.00	1030-1052	82.30	5
CoV2ID025 Raw data Min-max	PCR primer forward	NIID_WH-1_F509	CTCGAACTGCACCTCATGG	492-510	ORF1ab	CTCGAACTGCACCTCATGG	504-522	32.51	648-666	91.58	5
CoV2ID026 Raw data Min-max	PCR primer reverse	NIID_WH-1_R854	CAGAAGTTGTTATCGACATAGC	816-837	ORF1ab	GCTATGTCGATAACAACTTCTG	828-849	100.00	972-993	95.43	5
CoV2ID027 Raw data Min-max	PCR primer forward	NIID_WH-1_Seq_F519	ACCTCATGGTCATGTTATGG	502-521	ORF1ab	ACCTCATGGTCATGTTATGG	514-533	31.82	658-677	59.92	5
CoV2ID028 Raw data Min-max	PCR primer reverse	NIID_WH-1_Seq_R840	GACATAGCGAGTGTATGCC	805-823	ORF1ab	GGCATACACTCGCTATGTC	817-835	100.00	961-979	98.25	5
CoV2ID029 Raw data Min-max	PCR primer forward	WuhanCoV-spk1-f	TTGGCAAAATTCAAGACTCACTTT	24354-24377	S	TTGGCAAAATTCAAGACTCACTTT	24425-24448	32.70	26126-26150	83.99	5
CoV2ID030 Raw data Min-max	PCR primer reverse	WuhanCoV-spk2-r	TGTGGTTCATAAAAATTCCTTTGTG	24876-24900	S	CACAAAGGAATTTTTATGAACCACA	24947-24971	32.70	26649-26673	98.67	5
CoV2ID031 Raw data Min-max	PCR primer forward	NIID_WH-1_F24381	TCAAGACTCACTTTCTTCCAC	24364-24384	S	TCAAGACTCACTTTCTTCCAC	24435-24455	32.67	26137-26157	57.43	5
CoV2ID032 Raw data Min-max	PCR primer reverse	NIID_WH-1_R24873	ATTTGAAACAAAGACACCTTCAC	24834-24856	S	GTGAAGGTGTCTTTGTTTCAAAT	24905-24927	32.70	26607-26629	90.43	5
CoV2ID033 Raw data Min-max	PCR primer forward	NIID_WH-1_Seq_F24383	AAGACTCACTTTCTTCCACAG	24366-24386	S	AAGACTCACTTTCTTCCACAG	24437-24457	32.67	26139-26159	72.36	5
CoV2ID034 Raw data Min-max	PCR primer reverse	NIID_WH-1_Seq_R24865	CAAAGACACCTTCACGAGG	24830-24848	S	CCTCGTGAAGGTGTCTTTG	24901-24919	32.70	26603-26621	89.82	5
CoV2ID035 Raw data Min-max	PCR primer forward	NIID_2019-nCOV_N_F2	AAATTTTGGGGACCAGGAAC	29125-29144	N	AAATTTTGGGGACCAGGAAC	29196-29215	100.00	31408-31427	83.32	5
CoV2ID036 Raw data Min-max	PCR primer reverse	NIID_2019-nCOV_N_R2	TGGCAGCTGTGTAGGTCAAC	29263-29282	N	GTTGACCTACACAGGTGCCA	29334-29353	100.00	31546-31565	84.99	5
CoV2ID037 Raw data Min-max	Probe	NIID_2019-nCOV_N_P2	ATGTCGCGCATTGGCATGGA	29222-29241	N	ATGTCGCGCATTGGCATGGA	29293-29312	98.30	31505-31524	76.66	5
CoV2ID038 Raw data Min-max	PCR primer forward	CDC_2019-nCoV_N1-F	GACCCCAAAATCAGCGAAAT	28287-28306	N	GACCCCAAAATCAGCGAAAT	28358-28377	100.00	30413-30433	82.21	6
CoV2ID039 Raw data Min-max	PCR primer reverse	CDC_2019-nCoV_N1-R	TCTGGTTACTGCCAGTTGAATCTG	28335-28358	N	CAGATTCAACTGGCAGTAACCAGA	28406-28429	100.00	30462-30485	97.22	6
CoV2ID040 Raw data Min-max	Probe	CDC_2019-nCoV_N1-P	ACCCCGCATTACGTTTGGTGGACC	28309-28332	N	ACCCCGCATTACGTTTGGTGGACC	28380-28403	100.00	30436-30459	79.69	6
CoV2ID041 Raw data Min-max	PCR primer forward	CDC_2019-nCoV_N2-F	TTACAAACATTGGCCGCAAA	29164-29183	N	TTACAAACATTGGCCGCAAA	29235-29254	100.00	31447-31466	90.00	6
CoV2ID042 Raw data Min-max	PCR primer reverse	CDC_2019-nCoV_N2-R	GCGCGACATTCCGAAGAA	29213-29230	N	TTCTTCGGAATGTCGCGC	29284-29301	98.11	31496-31513	94.44	6
CoV2ID043 Raw data Min-max	Probe	CDC_2019-nCoV_N2-P	ACAATTTGCCCCCAGCGCTTCAG	29188-29210	N	ACAATTTGCCCCCAGCGCTTCAG	29259-29281	100.00	31471-31493	95.65	6
CoV2ID044 Raw data Min-max	PCR primer forward	CDC_2019-nCoV_N3-F	GGGAGCCTTGAATACACCAAAA	28681-28702	N	GGGAGCCTTGAATACACCAAAA	28752-28773	100.00	30963-30984	95.39	6
CoV2ID045 Raw data Min-max	PCR primer reverse	CDC_2019-nCoV_N3-R	TGTAGCACGATTGCAGCATTG	28732-28752	N	CAATGCTGCAATCGTGCTACA	28803-28823	100.00	31014-31034	95.23	6
CoV2ID046 Raw data Min-max	Probe	CDC_2019-nCoV_N3-P	AYCACATTGGCACCCGCAATCCTG	28704-28727	N	ATCACATTGGCACCCGCAATCCTG	28777-28798	100.00	30988-31009	79.08	6
CoV2ID047 Raw data Min-max	PCR primer forward	Pasteur_nCoV_IP2-12669Fw	ATGAGCTTAGTCCTGTTG	12690-12707	ORF1ab	ATGAGCTTAGTCCTGTTG	12738-12755	100.00	13385-13402	100.00	7
CoV2ID048 Raw data Min-max	PCR primer reverse	Pasteur_nCoV_IP2-12759Rv	CTCCCTTTGTTGTGTTGT	12780-12797	ORF1ab	ACAACACAACAAAGGGAG	12828-12845	100.00	13475-13492	87.75	7
CoV2ID049 Raw data Min-max	Probe	Pasteur_nCoV_IP2-12696bProbe	AGATGTCTTGTGCTGCCGGTA	12717-12737	ORF1ab	AGATGTCTTGTGCTGCCGGTA	12765-12785	100.00	13412-13432	98.41	7
CoV2ID050 Raw data Min-max	PCR primer forward	Pasteur_nCoV_IP4-14059Fw	GGTAACTGGTATGATTTCG	14080-14098	ORF1ab	GGTAACTGGTATGATTTCG	14130-14148	100.00	14933-14951	100.00	7
CoV2ID051 Raw data Min-max	PCR primer reverse	Pasteur_nCoV_IP4-14146Rv	CTGGTCAAGGTTAATATAGG	14167-14186	ORF1ab	CCTATATTAACCTTGACCAG	14217-14236	100.00	15020-15039	98.33	7
CoV2ID052 Raw data Min-max	Probe	Pasteur_nCoV_IP4-14084Probe	TCATACAAACCACGCCAGG	14105-14123	ORF1ab	TCATACAAACCACGCCAGG	14155-14173	100.00	14958-14976	81.40	7
CoV2ID053 Raw data Min-max	PCR primer forward	RBD-qF1	CAATGGTTTAACAGGCACAGG	23191 - 23211	S	CAATGGTTTAACAGGCACAGG	23262-23282	32.70	24962-24981	98.33	8
CoV2ID054 Raw data Min-max	PCR primer reverse	RBD-qR1	CTCAAGTGTCTGTGGATCACG	23291 - 23311	S	CGTGATCCACAGACACTTGAG	23362-23382	100.00	25062-25082	100.00	8
CoV2ID055 Raw data Min-max	PCR primer forward	ND-CoVs-951F	TGTKAGRTTYCCTAAYATTAC	22540 - 22560	S	TGTTAGATTTCCTAATATTAC	22611-22631	32.45	24182-24202	100.00	8
CoV2ID056 Raw data Min-max	PCR primer reverse	D-CoVs-1805R	ACATCYTGATANARAACAGC	23387 - 23406	S	GCTGTTCTTTATCAGGATGT	23458-23477	98.27	25158-25177	94.20	8
CoV2ID057 Raw data Min-max	PCR primer forward	nCoV_2019 Forward	CAAATTCTATGGTGGTTGGCACA	15216 - 15238	ORF1ab	CAAATTCTATGGTGGTTGGCACA	15266-15288	32.70	16069-16091	91.88	9
CoV2ID058 Raw data Min-max	PCR primer reverse	nCoV_2019 Reverse	GGCATGGCTCTATCACATTTAGG	15298 - 15320	ORF1ab	CCTAAATGTGATAGAGCCATGCC	15348-15370	32.70	16152-16174	100.00	9
CoV2ID059 Raw data Min-max	Probe	CoV_Probe	ATAATCCCAACCCATRAG	15280 - 15297	ORF1ab	CTTATGGGTTGGGATTAT	15330-15347	32.70	16134-16151	100.00	9
CoV2ID060 Raw data Min-max	Target Generation	N-gene-FWD IVT	AATTCTAATACGACTCACTATAGGGCCAAA(...)	28519 - 28545	N	CCAAATTGGCTACTACCGAAGAGCTAC	28590-28616	100.00	30646-30672	97.53	10
CoV2ID061 Raw data Min-max	Target Generation	N-gene-REV IVT	CACAGTTTGCTGTTTCTTCTGTCTCTGCGG	29420 - 29449	N	CCGCAGAGACAGAAGAAACAGCAAACTGTG	29491-29520	32.09	31823-31853	80.21	10
CoV2ID062 Raw data Min-max	Target Generation	E-gene-FWD IVT	AATTCTAATACGACTCACTATAGGGCTGGT(...)	26060 - 26088	E	CTGGTGTTGAACATGTTACCTTCTTCATC	26131-26159	100.00	27868-27896	89.87	10
CoV2ID063 Raw data Min-max	Target Generation	E-gene-REV IVT	CCTATTACTAGGTTCCATTGTTC	26574 - 26596	E	GAACAATGGAACCTAGTAATAGG	26645-26667	100.00	28382-28404	98.55	10
CoV2ID064 Raw data Min-max	LAMP outer forward primer	F3 2019-nCoV N-gene	AACACAAGCTTTCGGCAG	29083 - 29100	N	AACACAAGCTTTCGGCAG	29154-29171	98.01	31366-31383	98.12	10
CoV2ID065 Raw data Min-max	LAMP outer backward primer	B3 2019-nCoV N-gene	GAAATTTGGATCTTTGTCATCC	29290 - 29311	N	GGATGACAAAGATCCAAATTTC	29361-29382	96.88	31573-31594	85.74	10
CoV2ID066 Raw data Min-max	LAMP backward inner primer	BIP 2019-nCoV N-gene	TGCGGCCAATGTTTGTAATCAGCCAAGGAA(...)	29119 - 29137	N	CCAAGGAAATTTTGGGGAC	29231-29252	100.00	31443-31464	96.97	10
CoV2ID067 Raw data Min-max	LAMP forward inner primer	FIP 2019-nCoV N-gene	CGCATTGGCATGGAAGTCACTTTGATGGCA(...)	29269 - 29287	N	CTACACAGGTGCCATCAAA	29299-29318	98.30	31511-31530	83.33	10
CoV2ID068 Raw data Min-max	LAMP loop forward primer	LF 2019-nCoV N-gene	TTCCTTGTCTGATTAGTTC	29141 - 29159	N	GAACTAATCAGACAAGGAA	29212-29230	100.00	31424-31442	96.46	10
CoV2ID069 Raw data Min-max	LAMP loop backward primer	LB 2019-nCoV N-gene	ACCTTCGGGAACGTGGTT	29248 - 29265	N	ACCTTCGGGAACGTGGTT	29319-29336	100.00	31531-31548	94.43	10
CoV2ID070 Raw data Min-max	LAMP outer forward primer	F3 2019-nCoV E-gene	CCGACGACGACTACTAGC	26191 - 26208	E	CCGACGACGACTACTAGC	26262-26279	92.45	27999-28016	92.59	10
CoV2ID071 Raw data Min-max	LAMP outer backward primer	B3 2019-nCoV E-gene	AGAGTAAACGTAAAAAGAAGGTT	26402 - 26424	E	AACCTTCTTTTTACGTTTACTCT	26473-26495	100.00	28210-28232	97.10	10
CoV2ID072 Raw data Min-max	LAMP backward inner primer	BIP 2019-nCoV E-gene	ACCTGTCTCTTCCGAAACGAATTTGTAAGC(...)	26214 - 26233	E	TTTGTAAGCACAAGCTGATG	26324-26345	100.00	28061-28082	85.75	10
CoV2ID073 Raw data Min-max	LAMP forward inner primer	FIP 2019-nCoV E-gene	CTAGCCATCCTTACTGCGCTACTCACGTTA(...)	26374 - 26394	E	TGCAATATTGTTAACGTGAGT	26445-26465	100.00	28182-28202	100.00	10
CoV2ID074 Raw data Min-max	LAMP loop forward primer	LF 2019-nCoV E-gene	TCGATTGTGTGCGTACTGC	26355 - 26373	E	TCGATTGTGTGCGTACTGC	26426-26444	100.00	28163-28181	91.58	10
CoV2ID075 Raw data Min-max	LAMP loop backward primer	LB 2019-nCoV E-gene	TGAGTACATAAGTTCGTAC	26235 - 26253	E	GTACGAACTTATGTACTCA	26306-26324	100.00	28043-28061	100.00	10
CoV2ID076 Raw data Min-max	PCR primer forward	N_Sarbeco_F	CACATTGGCACCCGCAATC	28706 - 28724	N	CACATTGGCACCCGCAATC	28777-28795	100.00	30988-31006	94.73	11
CoV2ID077 Raw data Min-max	PCR primer reverse	N_Sarbeco_R	GAGGAACGAGAAGAGGCTTG	28814 - 28833	N	CAAGCCTCTTCTCGTTCCTC	28885-28904	100.00	31096-31115	84.98	11
CoV2ID078 Raw data Min-max	Probe	N_Sarbeco_P	ACTTCCTCAAGGAACAACATTGCCA	28753 - 28777	N	ACTTCCTCAAGGAACAACATTGCCA	28824-28848	100.00	31035-31059	98.67	11
CoV2ID079 Raw data Min-max	PCR primer forward	nsp2f	ATGCATTTGCATCAGAGGCT	1866 - 1885	ORF1ab	ATGCATTTGCATCAGAGGCT	1902-1921	100.00	2049-2068	91.67	12
CoV2ID080 Raw data Min-max	PCR primer reverse	nsp2r	TTGTTATAGCGGCCTTCTGT	1951 - 1970	ORF1ab	ACAGAAGGCCGCTATAACAA	1987-1998	94.34	2134-2145	100.00	12
CoV2ID081 Raw data Min-max	PCR primer forward	N_gene_Taq1	TCTGGTAAAGGCCAACAACAA	28976 - 28996	N	TCTGGTAAAGGCCAACAACAA	29047-29067	100.00	31258-31278	96.82	13
CoV2ID082 Raw data Min-max	PCR primer reverse	N_gene_Taq2	TGTATGCTTTAGTGGCAGTACG	29057 - 29078	N	CGTACTGCCACTAAAGCATACA	29128-29149	100.00	31340-31361	98.48	13
CoV2ID083 Raw data Min-max	Probe	N_gene_Probe	CTGTCACTAAGAAATCTGCTGCTGAGGC	29007 - 29034	N	CTGTCACTAAGAAATCTGCTGCTGAGGC	29078-29105	100.00	31289-31316	92.85	13
CoV2ID084 Raw data Min-max	PCR primer forward	orf1ab-F	CAGACCTCGTCTATGCTTTAAGGC	13814 - 13837	ORF1ab	CAGACCTCGTCTATGCTTTAAGGC	13864-13887	100.00	14666-14689	91.94	14
CoV2ID085 Raw data Min-max	PCR primer reverse	orf1ab-R	CCCTGGTCAAGGTTAATATAGGCA	14165 - 14188	ORF1ab	TGCCTATATTAACCTTGACCAGGG	14215-14238	100.00	15018-15041	98.61	14
CoV2ID086 Raw data Min-max	PCR primer forward	S-F	CTTCCCTCAGTCAGCACCTC	24715 - 24734	S	CTTCCCTCAGTCAGCACCTC	24786-24805	100.00	26488-26507	100.00	14
CoV2ID087 Raw data Min-max	PCR primer reverse	S-R	AACCAGTGTGTGCCATTTGA	24815 - 24870	S	TCAAATGGCACACACTGGTT	24922-24941	32.70	26624-26643	96.62	14
CoV2ID088 Raw data Min-max	LAMP outer forward primer	orf1ab-4F3	GGTATGATTTTGTAGAAAACCCA	13925 - 13947	ORF1ab	GGTATGATTTTGTAGAAAACCCA	13975-13997	100.00	14777-14800	89.15	14
CoV2ID089 Raw data Min-max	LAMP outer backward primer	orf1ab-4B3	CAACAGGAACTCCACTACC	14122 - 14140	ORF1ab	GGTAGTGGAGTTCCTGTTG	14172-14190	100.00	14975-14993	91.58	14
CoV2ID090 Raw data Min-max	LAMP forward inner primer	orf1ab-4FIP	GGCATCACAGAATTGTACTGTTTTTGCGTA(...)	13958 - 13976	ORF1ab	GCGTATACGCCAACTTAGG	14051-14075	100.00	14854-14878	98.67	14
CoV2ID091 Raw data Min-max	LAMP backward inner primer	orf1ab-4BIP	AATGCTGGTATTGTTGGTGTACTGAGGTTT(...)	14095 - 14115	ORF1ab	TTCGGTGATTTCATACAAACC	14082-14106	98.64	14885-14909	92.00	14
CoV2ID092 Raw data Min-max	LAMP loop forward primer	orf1ab-4LF	AACAAAGCTTGGCGTACACGTTCA	13977 - 14000	ORF1ab	TGAACGTGTACGCCAAGCTTTGTT	14027-14050	100.00	14830-14853	91.94	14
CoV2ID093 Raw data Min-max	LAMP outer forward primer	S-123F3	TCTATTGCCATACCCACAA	23693 - 23711	S	TCTATTGCCATACCCACAA	23764-23782	32.70	25464-25482	91.57	14
CoV2ID094 Raw data Min-max	LAMP outer backward primer	S-123B3	GGTGTTTTGTAAATTTGTTTGAC	23915 - 23937	S	GTCAAACAAATTTACAAAACACC	23986-24008	32.70	25686-25708	95.62	14
CoV2ID095 Raw data Min-max	LAMP forward inner primer	S-123FIP	CATTCAGTTGAATCACCACAAATGTGTGTT(...)	23724 - 23745	S	GTGTTACCACAGAAATTCTACC	23855-23879	32.09	25555-25579	100.00	14
CoV2ID096 Raw data Min-max	LAMP backward inner primer	S-123BIP	GTTGCAATATGGCAGTTTTTGTACATTGGG(...)	23880 - 23899	S	AACAAGACAAAAACACCCAA	23892-23916	32.70	25592-25616	100.00	14
CoV2ID097 Raw data Min-max	LAMP loop forward primer	S-123LF	ACTGATGTCTTGGTCATAGACACT	23746 - 23769	S	AGTGTCTATGACCAAGACATCAGT	23817-23840	32.09	25517-25540	97.22	14
CoV2ID098 Raw data Min-max	LAMP loop backward primer	S-123LB	TAAACCGTGCTTTAACTGGAATAGC	23850 - 23874	S	TAAACCGTGCTTTAACTGGAATAGC	23921-23945	32.70	25621-25645	89.33	14
CoV2ID099 Raw data Min-max	PCR primer forward	Chan_S_gene_F	CCTACTAAATTAAATGATCTCTGCTTTACT	22712 - 22741	S	CCTACTAAATTAAATGATCTCTGCTTTACT	22783-22812	32.70	24382-24411	98.89	15
CoV2ID100 Raw data Min-max	PCR primer reverse	Chan_S_gene_R	CAAGCTATAACGCAGCCTGTA	22849 - 22869	S	TACAGGCTGCGTTATAGCTTG	22920-22940	32.70	24520-24540	92.06	15
CoV2ID101 Raw data Min-max	PCR primer forward	Chan_RdRp_gene_F	CAAGTGGGGTAAGGCTAGACTTT	14965 - 14983	ORF1ab	TGGGGTAAGGCTAGACTTT	15015-15033	32.70	15818-15836	100.00	15
CoV2ID102 Raw data Min-max	PCR primer reverse	Chan_RdRp_gene_R	ACTTAGGATAATCCCAACCCAT	15283 - 15302	ORF1ab	ATGGGTTGGGATTATCCTAA	15333-15352	32.70	16137-16156	100.00	15
CoV2ID103 Raw data Min-max	PCR primer forward	Caly_BetaCoV_RdRp_F	AAATTCTATGGTGGTTGGCACAACATGTT	15217 - 15245	ORF1ab	AAATTCTATGGTGGTTGGCACAACATGTT	15267-15295	32.70	16070-16098	97.70	16
CoV2ID104 Raw data Min-max	PCR primer reverse	Caly_BetaCoV_RdRp_R	TAGGCATAGCTCTRTCACAYTT	15301 - 15322	ORF1ab	AAATGTGATAGAGCCATGCCTA	15351-15372	32.70	16155-16176	100.00	16
CoV2ID105 Raw data Min-max	Probe	Caly_BetaCoV_RdRp_P	TGGGTTGGGATTATC	15284 - 15298	ORF1ab	TGGGTTGGGATTATC	15334-15348	32.70	16138-16152	100.00	16
CoV2ID106 Raw data Min-max	PCR primer forward	Huang_E_gene_F	ACTTCTTTTTCTTGCTTTCGTGGT	26295 - 26318	E	ACTTCTTTTTCTTGCTTTCGTGGT	26366-26389	100.00	28103-28126	97.22	17
CoV2ID107 Raw data Min-max	PCR primer reverse	Huang_E_gene_R	GCAGCAGTACGCACACAATC	26357 - 26376	E	GATTGTGTGCGTACTGCTGC	26428-26447	100.00	28165-28184	98.33	17
CoV2ID108 Raw data Min-max	Probe	Huang_E_gene_P	CTAGTTACACTAGCCATCCTTACTGC	26326 - 26351	E	CTAGTTACACTAGCCATCCTTACTGC	26397-26422	98.67	28134-28159	89.48	17
CoV2ID109 Raw data Min-max	PCR primer forward	Lu_orf1ab_F	AGAAGATTGGTTAGATGATGATAGT	3193 - 3217	ORF1ab	AGAAGATTGGTTAGATGATGATAGT	3235-3259	32.70	3395-3419	100.00	18
CoV2ID110 Raw data Min-max	PCR primer reverse	Lu_orf1ab_R	TTCCATCTCTAATTGAGGTTGAACC	3286 - 3310	ORF1ab	GGTTCAACCTCAATTAGAGATGGAA	3328-3352	100.00	3488-3512	90.67	18
CoV2ID111 Raw data Min-max	Probe	Lu_orf1ab_P	TCCTCACTGCCGTCTTGTTGACCA	3229 - 3252	ORF1ab	TGGTCAACAAGACGGCAGTGAGGA	3271-3294	48.87	3431-3454	100.00	18
CoV2ID112 Raw data Min-max	LAMP outer forward primer	F3 2019-nCoV N1-gene	TGGACCCCAAAATCAGCG	28285 - 28302	N	TGGACCCCAAAATCAGCG	28356-28373	100.00	30411-30429	82.80	19
CoV2ID113 Raw data Min-max	LAMP outer backward primer	B3 2019-nCoV N1-gene	GCCTTGTCCTCGAGGGAAT	28468 - 28486	N	ATTCCCTCGAGGACAAGGC	28539-28557	100.00	30595-30613	89.82	19
CoV2ID114 Raw data Min-max	LAMP forward inner primer	FIP 2019-nCoV N1-gene	CCACTGCGTTCTCCATTCTGGTAAATGCAC(...)	28303 - 28321	N	AATGCACCCCGCATTACG	28424-28445	98.45	30480-30501	80.60	19
CoV2ID115 Raw data Min-max	LAMP backward inner primer	BIP 2019-nCoV N1-gene	CGCGATCAAAACAACGTCGGCCCTTGCCAT(...)	28438 - 28457	N	TCTCACTCAACATGGCAAGG	28448-28470	91.83	30504-30526	82.32	19
CoV2ID116 Raw data Min-max	LAMP loop forward primer	LF 2019-nCoV N1-gene	TGAATCTGAGGGTCCACCAAA	28322 - 28342	N	TTTGGTGGACCCTCAGATTCA	28393-28413	100.00	30449-30469	86.98	19
CoV2ID117 Raw data Min-max	LAMP loop backward primer	LB 2019-nCoV N1-gene	GGTTTACCCAATAATACTGCGTCTT	28403 - 28427	N	GGTTTACCCAATAATACTGCGTCTT	28474-28498	98.64	30530-30554	98.67	19
CoV2ID118 Raw data Min-max	LAMP outer forward primer	F3 2019-nCoV N15-gene	AGATCACATTGGCACCCG	28702 - 28719	N	AGATCACATTGGCACCCG	28773-28790	100.00	30984-31001	87.77	19
CoV2ID119 Raw data Min-max	LAMP outer backward primer	B3 2019-nCoV N15-gene	CCATTGCCAGCCATTCTAGC	28895 - 28914	N	GCTAGAATGGCTGGCAATGG	28966-28985	100.00	31177-31196	69.99	19
CoV2ID120 Raw data Min-max	LAMP forward inner primer	FIP 2019-nCoV N15-gene	TGCTCCCTTCTGCGTAGAAGCCAATGCTGC(...)	28732 - 28751	N	CAATGCTGCAATCGTGCTAC	28852-28873	98.45	31063-31084	88.78	19
CoV2ID121 Raw data Min-max	LAMP backward inner primer	BIP 2019-nCoV N15-gene	GGCGGCAGTCAAGCCTCTTCCCTACTGCTG(...)	28864 - 28883	N	AACTCCAGGCAGCAGTAGGG	28876-28895	100.00	31087-31106	86.66	19
CoV2ID122 Raw data Min-max	LAMP loop forward primer	LF 2019-nCoV N15-gene	GCAATGTTGTTCCTTGAGGAAGTT	28752 - 28775	N	AACTTCCTCAAGGAACAACATTGC	28823-28846	100.00	31034-31057	98.61	19
CoV2ID123 Raw data Min-max	LAMP loop backward primer	LB 2019-nCoV N15-gene	GTTCCTCATCACGTAGTCGCAACA	28827 - 28850	N	GTTCCTCATCACGTAGTCGCAACA	28898-28921	100.00	31109-31132	71.35	19
CoV2ID124 Raw data Min-max	LAMP outer forward primer	F3 2019-nCoV S17-gene	TCTTTCACACGTGGTGTT	21653 - 21670	S	TCTTTCACACGTGGTGTT	21724-21741	32.70	23285-23302	98.15	19
CoV2ID125 Raw data Min-max	LAMP outer backward primer	B3 2019-nCoV S17-gene	GTACCAAAAATCCAGCCTC	21867 - 21885	S	GAGGCTGGATTTTTGGTAC	21938-21956	32.70	23499-23517	98.25	19
CoV2ID126 Raw data Min-max	LAMP forward inner primer	FIP 2019-nCoV S17-gene	CATGGAACCAAGTAACATTGGAAAACCTGA(...)	21677 - 21697	S	CCTGACAAAGTTTTCAGATCC	21808-21832	32.70	23369-23393	97.33	19
CoV2ID127 Raw data Min-max	LAMP backward inner primer	BIP 2019-nCoV S17-gene	CTCTGGGACCAATGGTACTAAGAGGACTTC(...)	21838 - 21855	S	TGCTTCCACTGAGAAGTC	21843-21867	32.70	23404-23428	78.66	19
CoV2ID128 Raw data Min-max	LAMP loop forward primer	LF 2019-nCoV S17-gene	GAAAGGTAAGAACAAGTCCTGAGT	21713 - 21736	S	ACTCAGGACTTGTTCTTACCTTTC	21784-21807	32.70	23345-23368	97.22	19
CoV2ID129 Raw data Min-max	LAMP loop backward primer	LB 2019-nCoV S17-gene	CTGTCCTACCATTTAATGATGGTGT	21807 - 21831	S	CTGTCCTACCATTTAATGATGGTGT	21878-21902	32.70	23439-23463	88.00	19
CoV2ID130 Raw data Min-max	LAMP outer forward primer	F3 2019-nCoV O117-gene	CCCCAAAATGCTGTTGTT	1346 - 1363	ORF1ab	CCCCAAAATGCTGTTGTT	1358-1375	100.00	1505-1522	96.29	19
CoV2ID131 Raw data Min-max	LAMP outer backward primer	B3 2019-nCoV O117-gene	TAGCACGTGGAACCCAAT	1530 - 1547	ORF1ab	ATTGGGTTCCACGTGCTA	1566-1583	32.70	1713-1730	100.00	19
CoV2ID132 Raw data Min-max	LAMP forward inner primer	FIP 2019-nCoV O117-gene	GGTTTTCAAGCCAGATTCATTATGGATGTC(...)	1381 - 1402	ORF1ab	TGTCACAATTCAGAAGTAGGA	1462-1486	32.70	1609-1633	91.98	19
CoV2ID133 Raw data Min-max	LAMP backward inner primer	BIP 2019-nCoV O117-gene	TCTTCGTAAGGGTGGTCGCAGCACACTTGT(...)	1509 - 1527	ORF1ab	GTTGCCATAACAAGTGTGC	1489-1508	32.70	1636-1655	88.33	19
CoV2ID134 Raw data Min-max	LAMP loop forward primer	LF 2019-nCoV O117-gene	TCGGCAAGACTATGCTCAGG	1403 - 1422	ORF1ab	CCTGAGCATAGTCTTGCCGA	1439-1458	32.70	1586-1605	96.66	19
CoV2ID135 Raw data Min-max	LAMP loop backward primer	LB 2019-nCoV O117-gene	TTGCCTTTGGAGGCTGTGT	1476 - 1494	ORF1ab	TTGCCTTTGGAGGCTGTGT	1512-1530	32.70	1659-1677	96.49	19
CoV2ID136 Raw data Min-max	LAMP outer forward primer	F3 2019-nCoV orf1ab-gene	AAACGTAATGTCATCCCTACT	15034 - 15054	ORF1ab	AAACGTAATGTCATCCCTACT	15084-15104	32.70	15887-15907	100.00	20
CoV2ID137 Raw data Min-max	LAMP outer backward primer	B3 2019-nCoV orf1ab-gene	ACTGTTTATAGTGATGTAGAAAACC	15250 - 15274	ORF1ab	ACTGTTTATAGTGATGTAGAAAACC	15300-15324	32.70	16103-16128	97.44	20
CoV2ID138 Raw data Min-max	LAMP forward inner primer	FIP 2019-nCoV orf1ab-gene	ACAGATAGAGACACCAGCTACGGCTCAAAT(...)	15059 - 15082	ORF1ab	CTCAAATGAATCTTAAGTATGCCA	15109-15132	32.70	15912-15935	100.00	20
CoV2ID139 Raw data Min-max	LAMP backward inner primer	BIP 2019-nCoV orf1ab-gene	ATAGCCGCCACTAAGAGGAGCCCAACCACC(...)	15215 - 15234	ORF1ab	CAAATTCTATGGTGGTTGG	15265-15284	32.70	16068-16087	100.00	20
CoV2ID140 Raw data Min-max	LAMP loop backward primer	LF 2019-nCoV orf1ab-gene	TTAGTGCAAAGAATAGAGCTCGCA	15083 - 15106	N	TTAGTGCAAAGAATAGAGCTCGCA	15133-15156	32.70	15936-15959	100.00	21
CoV2ID141 Raw data Min-max	LAMP outer forward primer	F3 2019-nCoV N-gene	GCCAAAAGGCTTCTACGCA	28774 - 28792	N	GCCAAAAGGCTTCTACGCA	28845-28863	91.55	31056-31074	89.82	21
CoV2ID142 Raw data Min-max	LAMP outer backward primer	B3 2019-nCoV N-gene	TTGCTCTCAAGCTGGTTCAA	28952 - 28971	N	TTGAACCAGCTTGAGAGCAA	29023-29042	100.00	31234-31253	96.66	21
CoV2ID143 Raw data Min-max	LAMP forward inner primer	FIP 2019-nCoV N-gene	TCCCCTACTGCTGCCTGGAGCAGTCAAGCC(...)	28809 - 28829	N	GCAGTCAAGCCTCTTCTCGTT	28880-28900	100.00	31091-31111	78.72	21
CoV2ID144 Raw data Min-max	LAMP backward inner primer	BIP 2019-nCoV N-gene	TCTCCTGCTAGAATGGCTGGCATCTGTCAA(...)	28932 - 28952	N	CTTTGCTGCTGCTTGACAGAT	28960-28981	100.00	31171-31192	86.35	21
CoV2ID145 Raw data Min-max	LAMP loop backward primer	LB 2019-nCoV N-gene	TGGCGGTGATGCTGCTCTT	28912 - 28930	N	TGGCGGTGATGCTGCTCTT	28983-29001	91.55	31194-31212	77.88	21
CoV2ID146 Raw data Min-max	LAMP outer forward primer	GeneN-A-F3	TGGCTACTACCGAAGAGCT	28525 - 28543	N	TGGCTACTACCGAAGAGCT	28596-28614	100.00	30652-30670	91.57	22
CoV2ID147 Raw data Min-max	LAMP outer backward primer	GeneN-A-B3	TGCAGCATTGTTAGCAGGAT	28722 - 28741	N	ATCCTGCTAACAATGCTGCA	28793-28812	100.00	31004-31023	86.66	22
CoV2ID148 Raw data Min-max	LAMP loop forward primer	GeneN-A-LF	GGACTGAGATCTTTCATTTTACCGT	28566 - 28590	N	ACGGTAAAATGAAAGATCTCAGTCC	28637-28661	100.00	30693-30717	98.67	22
CoV2ID149 Raw data Min-max	LAMP loop backward primer	GeneN-A-LB	ACTGAGGGAGCCTTGAATACA	28676 - 28696	N	ACTGAGGGAGCCTTGAATACA	28747-28767	100.00	30958-30978	78.66	22
CoV2ID150 Raw data Min-max	LAMP forward inner primer	GeneN-A-FIP	TCTGGCCCAGTTCCTAGGTAGTCCAGACGA(...)	28545 - 28563	N	CCAGACGAATTCGTGGTGG	28676-28697	100.00	30732-30753	96.97	22
CoV2ID151 Raw data Min-max	LAMP backward inner primer	GeneN-A-BIP	AGACGGCATCATATGGGTTGCACGGGTGCC(...)	28702 - 28719	N	AGATCACATTGGCACCCG	28725-28746	91.76	30984-31001	87.77	22
CoV2ID152 Raw data Min-max	LAMP loop forward primer	2019-nCoV N-gene_LF	CGACTACGTGATGAGGAACGA	28825 - 28845	N	TCGTTCCTCATCACGTAGTCG	28896-28916	100.00	31107-31127	59.00	23
CoV2ID153 Raw data Min-max	LAMP loop backward primer	2019-nCoV N-gene_LB	AATGGCGGTGATGCTGCTCTT	28910 - 28930	N	AATGGCGGTGATGCTGCTCTT	28981-29001	98.38	31192-31212	85.39	23
CoV2ID154 Raw data Min-max	LAMP outer forward primer	F3 2019-nCoV orf-gene	TGCTTCAGTCAGCTGATG	13434 - 13451	ORF1ab	TGCTTCAGTCAGCTGATG	13484-13501	98.11	14286-14303	100.00	23
CoV2ID155 Raw data Min-max	LAMP outer backward primer	B3 2019-nCoV orf-gene	TTAAATTGTCATCTTCGTCCTT	13615 - 13636	ORF1ab	AAGGACGAAGATGACAATTTAA	13665-13686	100.00	14467-14488	90.30	23
CoV2ID156 Raw data Min-max	LAMP forward inner primer	FIP 2019-nCoV orf-gene	TCAGTACTAGTGCCTGTGCCCACAATCGTT(...)	13452 - 13472	ORF1ab	CACAATCGTTTTTAAACGGGT	13502-13522	96.77	14304-14324	100.00	23
CoV2ID157 Raw data Min-max	LAMP backward inner primer	BIP 2019-nCoV orf-gene	TCGTATACAGGGCTTTTGACATCTATCTTG(...)	13596 - 13613	ORF1ab	TTGTTGTCGCTTCCAAGA	13579-13603	97.28	14381-14405	97.32	23
CoV2ID158 Raw data Min-max	LAMP loop forward primer	LF 2019-nCoV orf-gene	CTGCACTTACACCGCAA	13473 - 13489	ORF1ab	TTGCGGTGTAAGTGCAG	13523-13539	100.00	14325-14341	100.00	23
CoV2ID159 Raw data Min-max	LAMP loop backward primer	LB 2019-nCoV orf-gene	GTAGCTGGTTTTGCTAAATTCC	13564 - 13585	ORF1ab	GTAGCTGGTTTTGCTAAATTCC	13614-13635	96.91	14416-14437	90.29	23
CoV2ID160 Raw data Min-max	LAMP outer forward primer	As1_ORF1ab_F3	GGTGGACAAATTGTCAC	2246 - 2262	ORF1ab	GGTGGACAAATTGTCAC	2288-2304	100.00	2435-2451	100.00	24
CoV2ID161 Raw data Min-max	LAMP outer backward primer	As1_ORF1ab_B3	CTTCTCTGGATTTAACACACTT	2420 - 2441	ORF1ab	AAGTGTGTTAAATCCAGAGAAG	2462-2483	100.00	2610-2631	100.00	24
CoV2ID162 Raw data Min-max	LAMP loop forward primer	As1_ORF1ab_LF	TTACAAGCTTAAAGAATGTCTGAACACT	2285 - 2312	ORF1ab	AGTGTTCAGACATTCTTTAAGCTTGTAA	2327-2354	100.00	2474-2501	97.62	24
CoV2ID163 Raw data Min-max	LAMP loop backward primer	As1_ORF1ab_LB	TTGAATTTAGGTGAAACATTTGTCACG	2372 - 2398	ORF1ab	TTGAATTTAGGTGAAACATTTGTCACG	2414-2440	100.00	2562-2588	97.53	24
CoV2ID164 Raw data Min-max	LAMP forward inner primer	As1_ORF1ab_FIP	TCAGCACACAAAGCCAAAAATTTATCTGTG(...)	2263 - 2284	ORF1ab	CTGTGCAAAGGAAATTAAGGAG	2355-2379	100.00	2502-2526	90.67	24
CoV2ID165 Raw data Min-max	LAMP backward inner primer	As1_ORF1ab_BIP	TATTGGTGGAGCTAAACTTAAAGCCCTGTA(...)	2399 - 2418	ORF1ab	CACTCAAAGGGATTGTACAG	2389-2413	100.00	2539-2561	100.00	24
CoV2ID166 Raw data Min-max	LAMP forward inner primer	As1e_ORF1ab_FIP	TCAGCACACAAAGCCAAAAATTTATTTTTC(...)	2263 - 2284	ORF1ab	CTGTGCAAAGGAAATTAAGGAG	2353-2379	100.00	2500-2526	90.86	24
CoV2ID167 Raw data Min-max	LAMP backward inner primer	As1e_ORF1ab_BIP	TATTGGTGGAGCTAAACTTAAAGCCTTTTC(...)	2399 - 2421	ORF1ab	CACTCAAAGGGATTGTACAGAAA	2389-2415	100.00	2539-2563	100.00	24
CoV2ID168 Raw data Min-max	RPA forward primer	Metsky_orf1ab_F	gaaatTAATACGACTCACTATAgggCCAAG(...)	3130 - 3159	ORF1ab	CCAAGGTAAACCTTTGGAATTTGGTGCCAC	3172-3201	32.05	3332-3361	95.55	25
CoV2ID169 Raw data Min-max	RPA reverse primer	Metsky_orf1ab_R	ACTATCATCATCTAACCAATCTTCTTCTTG	3188 - 3217	ORF1ab	CAAGAAGAAGATTGGTTAGATGATGATAGT	3230-3259	32.70	3390-3419	100.00	25
CoV2ID170 Raw data Min-max	RPA forward primer	orf1ab_F	TAATACGACTCACTATAGGGACATAAACAA(...)	12041 - 12073	ORF1ab	GACATAAACAAGCTTTGTGAAGAAATGCTG(...)	12089-12121	63.49	12734-12766	80.60	26
CoV2ID171 Raw data Min-max	RPA reverse primer	orf1ab_R	TTGAGCAGTAGCAAAAGCTGCATATGATGG(...)	12115 - 12148	ORF1ab	CCTTCCATCATATGCAGCTTTTGCTACTGC(...)	12163-12196	92.33	12808-12841	80.78	26
CoV2ID172 Raw data Min-max	gRNA	gRNA_ORF1ab	GGGGAUUUAGACUACCCCAAAAACGAAGGG(...)	12082 - 12109	ORF1ab	AACCTTACAAGCTATAGCCTCAGAGTTT	12130-12157	100.00	12775-12802	96.43	26
CoV2ID173 Raw data Min-max	LAMP outer forward primer	nCoV-N-F3	CCAGAATGGAGAACGCAGTG	28354 - 28373	N	CCAGAATGGAGAACGCAGTG	28425-28444	98.30	30481-30500	88.33	27
CoV2ID174 Raw data Min-max	LAMP outer backward primer	nCoV-N-B3	CCGTCACCACCACGAATT	28552 - 28569	N	AATTCGTGGTGGTGACGG	28623-28640	100.00	30679-30696	100.00	27
CoV2ID175 Raw data Min-max	LAMP forward inner primer	nCoV-N-FIP	AGCGGTGAACCAAGACGCAGGGCGCGATCA(...)	28374 - 28392	N	GGGCGCGATCAAAACAACG	28490-28509	100.00	30546-30565	98.33	27
CoV2ID176 Raw data Min-max	LAMP backward inner primer	nCoV-N-BIP	AATTCCCTCGAGGACAAGGCGAGCTCTTCG(...)	28524 - 28543	N	TTGGCTACTACCGAAGAGCT	28538-28558	100.00	30594-30614	96.82	27
CoV2ID177 Raw data Min-max	LAMP loop forward primer	nCoV-N-LF	TTATTGGGTAAACCTTGGGGC	28396 - 28416	N	GCCCCAAGGTTTACCCAATAA	28467-28487	98.38	30523-30543	96.82	27
CoV2ID178 Raw data Min-max	LAMP loop backward primer	nCoV-N-LB	TTCCAATTAACACCAATAGCAGTCC	28488 - 28512	N	TTCCAATTAACACCAATAGCAGTCC	28559-28583	100.00	30615-30639	100.00	27
CoV2ID179 Raw data Min-max	LAMP outer backward primer	Baek_nCoV N-B3	AGCCAATTTGGTCATCTGGA	28510 - 28529	N	TCCAGATGACCAAATTGGCT	28581-28600	100.00	30637-30656	98.33	28
CoV2ID180 Raw data Min-max	LAMP forward inner primer	Baek_nCoV N-FIP	CGTTGTTTTGATCGCGCCCCATTACGTTTG(...)	28315 - 28335	N	CATTACGTTTGGTGGACCCTC	28386-28406	100.00	30442-30462	88.57	28
CoV2ID181 Raw data Min-max	LAMP backward inner primer	Baek_nCoV N-BIP	ATACTGCGTCTTGGTTCACCGCATTGGAAC(...)	28476 - 28494	N	GAGGACAAGGCGTTCCAAT	28487-28508	100.00	30543-30564	98.48	28
CoV2ID182 Raw data Min-max	LAMP loop forward primer	Baek_nCoV N-LF	TGCGTTCTCCATTCTGGTTACT	28349 - 28370	N	AGTAACCAGAATGGAGAACGCA	28420-28441	91.79	30476-30497	83.63	28
CoV2ID183 Raw data Min-max	LAMP loop backward primer	Baek_nCoV N-LB	TCTCACTCAACATGGCAAGGAA	28438 - 28459	N	TCTCACTCAACATGGCAAGGAA	28509-28530	100.00	30565-30586	98.48	28
CoV2ID184 Raw data Min-max	LAMP outer forward primer	Nsp3_1-61_F3	GGAATTTGGTGCCACTTC	3145 - 3162	ORF1ab	GGAATTTGGTGCCACTTC	3187-3204	32.02	3347-3364	98.14	29
CoV2ID185 Raw data Min-max	LAMP outer backward primer	Nsp3_1-61_B3	CTATTCACTTCAATAGTCTGAACA	3322 - 3345	ORF1ab	TGTTCAGACTATTGAAGTGAATAG	3364-3387	100.00	3524-3547	97.22	29
CoV2ID186 Raw data Min-max	LAMP forward inner primer	Nsp3_1-61_FIP	CTTGTTGACCAACAGTTTGTTGACTTCAAC(...)	3170 - 3190	ORF1ab	CTTCAACCTGAAGAAGAGCAA	3257-3281	32.70	3417-3441	100.00	29
CoV2ID187 Raw data Min-max	LAMP backward inner primer	Nsp3_1-61_BIP	CGGCAGTGAGGACAATCAGACACTGGTGTA(...)	3302 - 3321	ORF1ab	GAGATGGAACTTACACCAGT	3283-3304	49.69	3443-3464	96.97	29
CoV2ID188 Raw data Min-max	LAMP loop forward primer	Nsp3_1-61_LF	ATCATCATCTAACCAATCTTCTTC	3191 - 3214	ORF1ab	GAAGAAGATTGGTTAGATGATGAT	3233-3256	32.70	3393-3416	100.00	29
CoV2ID189 Raw data Min-max	LAMP loop backward primer	Nsp3_1-61_LB	TCAAACAATTGTTGAGGTTCAACC	3271 - 3294	ORF1ab	TCAAACAATTGTTGAGGTTCAACC	3313-3336	100.00	3473-3496	97.22	29
CoV2ID190 Raw data Min-max	LAMP outer forward primer	Nsp3_2-24_F3	TGCAACTAATAAAGCCACG	6253 - 6271	ORF1ab	TGCAACTAATAAAGCCACG	6295-6313	100.00	6459-6477	96.48	29
CoV2ID191 Raw data Min-max	LAMP outer backward primer	Nsp3_2-24_B3	CGTCTTTCTGTATGGTAGGATT	6425 - 6446	ORF1ab	AATCCTACCATACAGAAAGACG	6467-6488	100.00	6631-6652	85.75	29
CoV2ID192 Raw data Min-max	LAMP forward inner primer	Nsp3_2-24_FIP	TCTGACTTCAGTACATCAAACGAATAAATA(...)	6280 - 6302	ORF1ab	AAATACCTGGTGTATACGTTGTC	6375-6399	100.00	6539-6563	94.66	29
CoV2ID193 Raw data Min-max	LAMP backward inner primer	Nsp3_2-24_BIP	GACGCGCAGGGAATGGATAATTCCACTACT(...)	6403 - 6424	ORF1ab	AGTCTCTGAAGAAGTAGTGGAA	6445-6466	100.00	6609-6630	100.00	29
CoV2ID194 Raw data Min-max	LAMP loop forward primer	Nsp3_2-24_LF	TGTTTCAACTGGTTTTGTGCTCCA	6305 - 6328	ORF1ab	TGGAGCACAAAACCAGTTGAAACA	6347-6370	100.00	6511-6534	89.14	29
CoV2ID195 Raw data Min-max	LAMP loop backward primer	Nsp3_2-24_LB	TCTTGCCTGCGAAGATCTAAAAC	6379 - 6401	ORF1ab	TCTTGCCTGCGAAGATCTAAAAC	6421-6443	100.00	6585-6607	97.10	29
CoV2ID196 Raw data Min-max	LAMP outer forward primer	S_1-2-2_F3	CTGACAAAGTTTTCAGATCCTCAG	21678 - 21701	S	CTGACAAAGTTTTCAGATCCTCAG	21749-21772	32.09	23310-23333	89.16	29
CoV2ID197 Raw data Min-max	LAMP outer backward primer	S_1-2-2_B3	AGTACCAAAAATCCAGCCTCTT	21865 - 21886	S	AAGAGGCTGGATTTTTGGTACT	21936-21957	32.70	23497-23518	98.48	29
CoV2ID198 Raw data Min-max	LAMP forward inner primer	S_1-2-2_FIP	TCCCAGAGACATGTATAGCATGGAATCAAC(...)	21710 - 21732	S	TCAACTCAGGACTTGTTCTTACC	21826-21850	32.70	23387-23411	81.33	29
CoV2ID199 Raw data Min-max	LAMP backward inner primer	S_1-2-2_BIP	TGGTACTAAGAGGTTTGATAACCCTGTTAG(...)	21838 - 21860	S	TGCTTCCACTGAGAAGTCTAACA	21855-21881	32.70	23416-23442	89.63	29
CoV2ID200 Raw data Min-max	LAMP loop forward primer	S_1-2-2_LF	CCAAGTAACATTGGAAAAGAAA	21733 - 21754	S	TTTCTTTTCCAATGTTACTTGG	21804-21825	32.70	23365-23386	96.97	29
CoV2ID201 Raw data Min-max	LAMP loop backward primer	S_1-2-2_LB	GTCCTACCATTTAATGATGGTGTTT	21809 - 21833	S	GTCCTACCATTTAATGATGGTGTTT	21880-21904	32.70	23441-23465	88.00	29
CoV2ID202 Raw data Min-max	LAMP forward inner primer	N_21_FIP	TCCCCTACTGCTGCCTGGAGGCAGTCAAGC(...)	28808 - 28827	N	GGCAGTCAAGCCTCTTCTCG	28879-28898	100.00	31090-31109	76.65	29
CoV2ID203 Raw data Min-max	LAMP loop forward primer	N_21_LF	TGTTGCGACTACGTGATGAGGA	28829 - 28850	N	TCCTCATCACGTAGTCGCAACA	28900-28921	100.00	31111-31132	64.81	29
CoV2ID204 Raw data Min-max	LAMP loop backward primer	N_21_LB	ATGGCGGTGATGCTGCTCT	28911 - 28929	N	ATGGCGGTGATGCTGCTCT	28982-29000	98.21	31193-31211	79.64	29
CoV2ID205 Raw data Min-max	LAMP outer forward primer	NB-F3	ACCGAAGAGCTACCAGACG	28533 - 28551	N	ACCGAAGAGCTACCAGACG	28604-28622	100.00	30660-30678	98.24	30
CoV2ID206 Raw data Min-max	LAMP forward inner primer	NB-FIP	TCTGGCCCAGTTCCTAGGTAGTTCGTGGTG(...)	28554 - 28572	N	TTCGTGGTGGTGACGGTAA	28676-28697	100.00	30732-30753	96.97	30
CoV2ID207 Raw data Min-max	LAMP loop forward primer	NB-LF	CCATCTTGGACTGAGATCTTTCATT	28573 - 28597	N	AATGAAAGATCTCAGTCCAAGATGG	28644-28668	100.00	30700-30724	98.67	30
CoV2ID208 Raw data Min-max	LAMP outer forward primer	Lamb-F3	TCCAGATGAGGATGAAGAAGA	3043 - 3063	ORF1ab	TCCAGATGAGGATGAAGAAGA	3085-3105	32.09	3245-3265	96.82	30
CoV2ID209 Raw data Min-max	LAMP outer backward primer	Lamb-B3	AGTCTGAACAACTGGTGTAAG	3311 - 3331	ORF1ab	CTTACACCAGTTGTTCAGACT	3353-3373	100.00	3513-3533	90.16	30
CoV2ID210 Raw data Min-max	LAMP forward inner primer	Lamb-FIP	AGAGCAGCAGAAGTGGCACAGGTGATTGTG(...)	3064 - 3085	ORF1ab	AGGTGATTGTGAAGAAGAAGAG	3106-3127	32.09	3266-3287	91.82	30
CoV2ID211 Raw data Min-max	LAMP backward inner primer	Lamb-BIP	TCAACCTGAAGAAGAGCAAGAACTGATTGT(...)	3242 - 3259	ORF1ab	GGCAGTGAGGACAATCAG	3214-3235	32.65	3374-3395	88.75	30
CoV2ID212 Raw data Min-max	LAMP loop forward primer	Lamb-LF	CTCATATTGAGTTGATGGCTCA	3088 - 3109	ORF1ab	TGAGCCATCAACTCAATATGAG	3130-3151	32.03	3290-3311	96.97	30
CoV2ID213 Raw data Min-max	LAMP loop backward primer	Lamb-LB	ACAAACTGTTGGTCAACAAGAC	3220 - 3241	ORF1ab	ACAAACTGTTGGTCAACAAGAC	3262-3283	32.70	3422-3443	100.00	30
CoV2ID214 Raw data Min-max	PCR primer forward	PCR-C-fwd primer	ACACTCTTTCCCTACACGACGCTCTTCCGA(...)	29192 - 29214	N	TTTGCCCCCAGCGCTTCAGCGTT	29263-29285	100.00	31475-31497	97.10	31
CoV2ID215 Raw data Min-max	PCR primer reverse	PCR-C-rev primer	TGACTGGAGTTCAGACGTGTGCTCTTCCGA(...)	29149 - 29172	N	CAGACAAGGAACTGATTACAAACA	29220-29243	100.00	31432-31455	98.61	31
CoV2ID216 Raw data Min-max	LAMP outer backward primer	Wang_N_B3	TTTGGCCTTGTTGTTGTTGG	28987 - 29006	N	CCAACAACAACAAGGCCAAA	29058-29077	100.00	31269-31288	96.66	32
CoV2ID217 Raw data Min-max	LAMP forward inner primer	Wang_N_FIP	TCCCCTACTGCTGCCTGGAGTTTTCGGCAG(...)	28807 - 28824	N	CGGCAGTCAAGCCTCTTC	28935-28956	98.45	31146-31167	68.21	32
CoV2ID218 Raw data Min-max	LAMP backward inner primer	Wang_N_BIP	TCCTGCTAGAATGGCTGGCAATTTTTTTTG(...)	28953 - 28973	N	TGAACCAGCTTGAGAGCAAAA	28962-28983	100.00	31173-31194	79.68	32
CoV2ID219 Raw data Min-max	LAMP loop backward primer	Wang_N_LB	GCGGTGATGCTGCTCT	28914 - 28929	N	GCGGTGATGCTGCTCT	28985-29000	91.21	31196-31211	87.07	32
CoV2ID220 Raw data Min-max	RPA forward primer	E-Sarbeco_F1_RPA	GAAGAGACAGGTACGTTAATAGTTAATAGC(...)	26263 - 26294	E	GAAGAGACAGGTACGTTAATAGTTAATAGC(...)	26334-26365	100.00	28071-28102	96.87	33
CoV2ID221 Raw data Min-max	RPA reverse primer	E-Sarbeco-R2_RPA	ACGTTAACAATATTGCAGCAGTACGCACAC(...)	26360 - 26390	E	TGTGTGCGTACTGCTGCAATATTGTTAACG(...)	26431-26461	100.00	28168-28198	98.92	33
CoV2ID222 Raw data Min-max	RPA forward primer	2019-nCoV_N2-F_RPA	ACAAGGAACTGATTACAAACATTGGCCGCA(...)	29152 - 29183	N	ACAAGGAACTGATTACAAACATTGGCCGCA(...)	29223-29254	100.00	31435-31466	91.25	33
CoV2ID223 Raw data Min-max	RPA reverse primer	2019-nCoV_N2-R_RPA	TTCCATGCCAATGCGCGACATTCCGAAGAA	29213 - 29242	N	TTCTTCGGAATGTCGCGCATTGGCATGGAA	29284-29313	98.87	31496-31525	93.33	33
CoV2ID224 Raw data Min-max	PCR primer forward	Lamb_orf1ab_F	ATTTGGTGCCACTTCTGCTGC	3148 - 3168	ORF1ab	ATTTGGTGCCACTTCTGCTGC	3190-3210	32.15	3350-3370	90.16	34
CoV2ID225 Raw data Min-max	PCR primer reverse	Lamb_orf1ab_R	TCACTGCCGTCTTGTTGACCA	3229 - 3249	ORF1ab	TGGTCAACAAGACGGCAGTGA	3271-3291	32.70	3431-3451	100.00	34
CoV2ID226 Raw data Min-max	LAMP outer forward primer	Yang_ORF1ab_F3	GTTACGATGGTGGCTGTA	14885 - 14902	ORF1ab	GTTACGATGGTGGCTGTA	14935-14952	32.70	15738-15755	98.15	35
CoV2ID227 Raw data Min-max	LAMP outer backward primer	Yang_ORF1ab_B3	CTCAAATGAATCTTAAGTATGCC	15059 - 15081	ORF1ab	CTCAAATGAATCTTAAGTATGCC	15109-15131	32.70	15912-15934	100.00	35
CoV2ID228 Raw data Min-max	LAMP forward inner primer	Yang_ORF1ab_FIP	GCTAACCAAGTCATCGTCAATCCATTTAAT(...)	14952 - 14976	ORF1ab	TCCATTTAATAAATGGGGTAAGGCT	15002-15026	32.70	15805-15829	100.00	35
CoV2ID229 Raw data Min-max	LAMP backward inner primer	Yang_ORF1ab_BIP	AATGAGTTATGAGGATCAAGATGCAACGTA(...)	15035 - 15058	ORF1ab	AACGTAATGTCATCCCTACTATAA	15044-15068	32.70	15847-15871	98.67	35
CoV2ID230 Raw data Min-max	LAMP loop forward primer	Yang_ORF1ab_LF	ACCTAGACAAATCAGCTGGT	14930 - 14949	ORF1ab	ACCTAGACAAATCAGCTGGT	14980-14999	32.70	15783-15802	98.33	35
CoV2ID231 Raw data Min-max	LAMP loop backward primer	Yang_ORF1ab_LB	CTTTTCGCATATACAAA	15019 - 15035	ORF1ab	CTTTTCGCATATACAAA	15069-15085	32.70	15872-15888	96.08	35
CoV2ID232 Raw data Min-max	LAMP outer forward primer	Yang_E_F3	AGCTGATGAGTACGAACTT	26226 - 26244	E	AGCTGATGAGTACGAACTT	26297-26315	100.00	28034-28052	96.48	35
CoV2ID233 Raw data Min-max	LAMP outer backward primer	Yang_E_B3	ACTCTCGTGTTAAAAATCTGAA	26420 - 26441	E	ACTCTCGTGTTAAAAATCTGAA	26491-26512	100.00	28228-28249	96.97	35
CoV2ID234 Raw data Min-max	LAMP forward inner primer	Yang_E_FIP	TTCGTTTCGGAAGAGACAGTACTTCTTTTT(...)	26293 - 26318	E	GTACTTCTTTTTCTTGCTTTCGTGGT	26364-26389	100.00	28101-28126	97.44	35
CoV2ID235 Raw data Min-max	LAMP backward inner primer	Yang_E_BIP	TTGCTAGTTACACTAGCCATCCTTACGTGA(...)	26387 - 26406	E	ACGTGAGTCTTGTAAAACCT	26394-26419	92.00	28131-28156	90.76	35
CoV2ID236 Raw data Min-max	LAMP loop forward primer	Yang_E_LF	GTACGTTAATAGTTAATAGCG	26273 - 26293	E	GTACGTTAATAGTTAATAGCG	26344-26364	100.00	28081-28101	98.41	35
CoV2ID237 Raw data Min-max	LAMP loop backward primer	Yang_E_LB	GCGCTTCGATTGTGTGC	26350 - 26366	E	GCGCTTCGATTGTGTGC	26421-26437	91.34	28158-28174	74.11	35
CoV2ID238 Raw data Min-max	LAMP forward inner primer	Yang_N_FIP	CAATGCTGCAATCGTGCTACGCTTCTACGC(...)	28782 - 28802	N	GCTTCTACGCAGAAGGGAGCA	28853-28873	98.38	31064-31084	88.56	35
CoV2ID239 Raw data Min-max	LAMP backward inner primer	Yang_N_BIP	GGCGGCAGTCAAGCCTCTTCAACTCCAGGC(...)	28861 - 28882	N	TTCAACTCCAGGCAGCAGTAGG	28932-28953	90.22	31143-31164	73.68	35
CoV2ID240 Raw data Min-max	LAMP loop forward primer	Yang_N_LF	CTTCCTCAAGGAACAAC	28754 - 28770	N	CTTCCTCAAGGAACAAC	28825-28841	100.00	31036-31052	98.04	35
CoV2ID241 Raw data Min-max	LAMP loop backward primer	Yang_N_LB	ACGTAGTCGCAACAGTTCAAGAAATT	28837 - 28862	N	ACGTAGTCGCAACAGTTCAAGAAATT	28908-28933	98.62	31119-31144	77.90	35
CoV2ID242 Raw data Min-max	LAMP outer forward primer	Orf1a-A-F3	CTGCACCTCATGGTCATGTT	498 - 517	ORF1ab	CTGCACCTCATGGTCATGTT	510-529	32.06	654-673	64.92	36
CoV2ID243 Raw data Min-max	LAMP outer backward primer	Orf1a-A-B3	AGCTCGTCGCCTAAGTCAA	693 - 711	ORF1ab	TTGACTTAGGCGACGAGCT	705-723	83.09	849-867	72.98	36
CoV2ID244 Raw data Min-max	LAMP forward inner primer	Orf1a-A-FIP	GAGGGACAAGGACACCAAGTGTATGGTTGA(...)	517 - 537	ORF1ab	TATGGTTGAGCTGGTAGCAGA	584-605	89.19	728-749	96.97	36
CoV2ID245 Raw data Min-max	LAMP backward inner primer	Orf1a-A-BIP	CCAGTGGCTTACCGCAAGGTTTTAGATCGG(...)	669 - 687	ORF1ab	GTTACGGCGCCGATCTAAA	620-640	98.35	764-784	90.46	36
CoV2ID246 Raw data Min-max	LAMP loop forward primer	Orf1a-A-LF	CCGTACTGAATGCCTTCGAGT	538 - 558	ORF1ab	ACTCGAAGGCATTCAGTACGG	550-570	32.70	694-714	88.56	36
CoV2ID247 Raw data Min-max	LAMP loop backward primer	Orf1a-A-LB	TTCGTAAGAACGGTAATAAAGGAGC	633 - 657	ORF1ab	TTCGTAAGAACGGTAATAAAGGAGC	645-669	98.64	789-813	92.00	36
CoV2ID248 Raw data Min-max	LAMP outer forward primer	Orf1a-B-F3	TCATCAAACGTTCGGATGCT	474 - 493	ORF1ab	TCATCAAACGTTCGGATGCT	486-505	32.64	630-649	89.96	36
CoV2ID249 Raw data Min-max	LAMP outer backward primer	Orf1a-B-B3	TATGGCCACCAGCTCCTT	651 - 668	ORF1ab	AAGGAGCTGGTGGCCATA	663-680	91.45	807-824	98.14	36
CoV2ID250 Raw data Min-max	LAMP forward inner primer	Orf1a-B-FIP	CGACCGTACTGAATGCCTTCGAGAACTGCA(...)	495 - 514	ORF1ab	GAACTGCACCTCATGGTCAT	551-573	32.70	695-717	88.98	36
CoV2ID251 Raw data Min-max	LAMP backward inner primer	Orf1a-B-BIP	AGACACTTGGTGTCCTTGTCCCAGAAGAAC(...)	614 - 633	ORF1ab	GCTTACCGCAAGGTTCTTCT	582-603	52.77	726-747	96.97	36
CoV2ID252 Raw data Min-max	LAMP loop forward primer	Orf1a-B-LF	CTGCTACCAGCTCAACCATAAC	515 - 536	ORF1ab	GTTATGGTTGAGCTGGTAGCAG	527-548	32.26	671-692	74.54	36
CoV2ID253 Raw data Min-max	LAMP loop backward primer	Orf1a-B-LB	TCATGTGGGCGAAATACCAGT	592 - 612	ORF1ab	TCATGTGGGCGAAATACCAGT	604-624	100.00	748-768	98.41	36
CoV2ID254 Raw data Min-max	LAMP outer backward primer	Orf1a-C-B3	GATCAGTGCCAAGCTCGTC	704 - 722	ORF1ab	GACGAGCTTGGCACTGATC	716-734	100.00	860-878	96.49	36
CoV2ID255 Raw data Min-max	LAMP forward inner primer	Orf1a-C-FIP	GAGGGACAAGGACACCAAGTGTGGTAGCAG(...)	528 - 547	ORF1ab	TGGTAGCAGAACTCGAAGGC	584-605	89.19	728-749	96.97	36
CoV2ID256 Raw data Min-max	LAMP loop forward primer	Orf1a-C-LF	ACCACTACGACCGTACTGAAT	548 - 568	ORF1ab	ATTCAGTACGGTCGTAGTGGT	560-580	32.70	704-724	98.41	36
CoV2ID257 Raw data Min-max	LAMP outer forward primer	Zhu_Orf1ab_F3	GGATTTTGTGACTTAAAAGGTAAG	13286 - 13309	ORF1ab	GGATTTTGTGACTTAAAAGGTAAG	13336-13359	100.00	14138-14161	83.89	37
CoV2ID258 Raw data Min-max	LAMP outer backward primer	Zhu_Orf1ab_B3	GGTTTGCGGTGTAAGTGCAGCCCGT	13470 - 13494	ORF1ab	GGTTTGCGGTGTAAGTGCAGCCCGT	13520-13544	98.64	14322-14346	100.00	37
CoV2ID259 Raw data Min-max	LAMP forward inner primer	Zhu_Orf1ab_FIP	TGTACAAATACCTACAACTTGTGACACTTA(...)	13355 - 13379	ORF1ab	ACACTTAAAAACACAGTCTGTACCG	13405-13429	100.00	14207-14231	98.67	37
CoV2ID260 Raw data Min-max	LAMP backward inner primer	Zhu_Orf1ab_BIP	TCTGCGGTATGTGGAAAGGTTATGCTGATG(...)	13445 - 13462	ORF1ab	GCTGATGCACAATCGTTT	13430-13453	97.17	14232-14255	90.51	37
CoV2ID261 Raw data Min-max	LAMP loop forward primer	Zhu_Orf1ab_LF	CTAATGACCCTGTGGGTTT	13335 - 13353	ORF1ab	CTAATGACCCTGTGGGTTT	13385-13403	100.00	14187-14205	98.25	37
CoV2ID262 Raw data Min-max	LAMP loop backward primer	Zhu_Orf1ab_LB	GAACCCATGCTTCAGTC	13427 - 13443	ORF1ab	GAACCCATGCTTCAGTC	13477-13493	91.34	14279-14295	91.37	37
CoV2ID263 Raw data Min-max	LAMP outer forward primer	Zhu_N_F3	CTACCTAGGAACTGGGCC	28606 - 28623	N	CTACCTAGGAACTGGGCC	28677-28694	100.00	30733-30750	89.63	37
CoV2ID264 Raw data Min-max	LAMP outer backward primer	Zhu_N_B3	GGCAGTCAAGCCTCTTCT	28808 - 28825	N	GGCAGTCAAGCCTCTTCT	28879-28896	100.00	31090-31107	79.25	37
CoV2ID265 Raw data Min-max	LAMP forward inner primer	Zhu_N_FIP	CCTATGGTGCTAACAAAGACTGAGGGAGCC(...)	28676 - 28698	N	ACTGAGGGAGCCTTGAATACACC	28747-28769	100.00	30958-30980	92.69	37
CoV2ID266 Raw data Min-max	LAMP backward inner primer	Zhu_N_BIP	AATCCTGCTAACAATGCTGCAATCCTACGC(...)	28786 - 28803	N	CTACGCAGAAGGGAGCAG	28792-28815	100.00	31003-31026	86.38	37
CoV2ID267 Raw data Min-max	LAMP loop forward primer	Zhu_N_LF	GCATCATATGGGTTGCAAC	28659 - 28677	N	GCATCATATGGGTTGCAAC	28730-28748	100.00	30786-30795	100.00	37
CoV2ID268 Raw data Min-max	LAMP loop backward primer	Zhu_N_LB	CTTCCTCAAGGAACAACAT	28754 - 28772	N	CTTCCTCAAGGAACAACAT	28825-28843	100.00	31036-31054	98.25	37
CoV2ID269 Raw data Min-max	PCR primer forward	Amrane_S_F	AAACTTGTGCCCTTTTGGTG	22561 - 22580	S	AAACTTGTGCCCTTTTGGTG	22632-22651	32.70	24203-24223	96.82	38
CoV2ID270 Raw data Min-max	PCR primer reverse	Amrane_S_R	TGCTGATTCTCTTCCTGTTCC	22620 - 22640	S	GGAACAGGAAGAGAATCAGCA	22691-22711	32.70	24263-24283	91.74	38
CoV2ID271 Raw data Min-max	Probe	Amrane_S_P	CGCCACCAGATTTGCATCTG	22591 - 22610	S	CGCCACCAGATTTGCATCTG	22662-22681	32.70	24234-24253	88.33	38
CoV2ID272 Raw data Min-max	PCR primer forward	Wu_For	ATGGGTTGGGATTATCCTAAATGTGA	15283 - 15308	ORF1ab	ATGGGTTGGGATTATCCTAAATGTGA	15333-15358	32.70	16137-16162	100.00	39
CoV2ID273 Raw data Min-max	PCR primer reverse	Wu_Rev	AGCAGTTGTGGCATCTCCTGATGAG	15480 - 15504	ORF1ab	CTCATCAGGAGATGCCACAACTGCT	15530-15554	100.00	16334-16358	90.67	39
CoV2ID274 Raw data Min-max	Probe	MGB Probe	ATGCTTAGAATTATGGCCTCAC	15325 - 15346	ORF1ab	ATGCTTAGAATTATGGCCTCAC	15375-15396	73.76	16179-16200	90.30	39
CoV2ID275 Raw data Min-max	PCR primer forward	short_N_spk_2_F	AAGACGGCATCATATGGGTTGC	28653 - 28674	N	AAGACGGCATCATATGGGTTGC	28724-28745	98.43	30780-30795	95.76	40
CoV2ID276 Raw data Min-max	PCR primer reverse	short_N_spk_1_R	GGCAATGTTGTTCCTTGAGGAAG	28754 - 28776	N	CTTCCTCAAGGAACAACATTGCC	28825-28847	100.00	31036-31058	98.55	40
CoV2ID277 Raw data Min-max	LAMP outer forward primer	Yu_orf1ab_F3	CCACTAGAGGAGCTACTGTA	15182 - 15201	ORF1ab	CCACTAGAGGAGCTACTGTA	15232-15251	32.67	16035-16054	100.00	41
CoV2ID278 Raw data Min-max	LAMP outer backward primer	Yu_orf1ab_B3	TGACAAGCTACAACACGT	15370 - 15387	ORF1ab	ACGTGTTGTAGCTTGTCA	15420-15437	100.00	16224-16241	89.63	41
CoV2ID279 Raw data Min-max	LAMP forward inner primer	Yu_orf1ab_FIP	AGGTGAGGGTTTTCTACATCACTATATTGG(...)	15205 - 15227	ORF1ab	ATTGGAACAAGCAAATTCTATGG	15306-15331	32.70	16058-16080	98.55	41
CoV2ID280 Raw data Min-max	LAMP backward inner primer	Yu_orf1ab_BIP	ATGGGTTGGGATTATCCTAAATGTGTGCGA(...)	15344 - 15361	ORF1ab	CACTTGTTCTTGCTCGCA	15333-15357	32.70	16137-16161	100.00	41
CoV2ID281 Raw data Min-max	LAMP loop forward primer	Yu_orf1ab_LF	CAGTTTTTAACATGTTGTGCCAACC	15229 - 15253	ORF1ab	GGTTGGCACAACATGTTAAAAACTG	15279-15303	32.70	16082-16106	96.00	41
CoV2ID282 Raw data Min-max	LAMP loop backward primer	Yu_orf1ab_LB	ATAGAGCCATGCCTAACATGCTT	15308 - 15330	ORF1ab	ATAGAGCCATGCCTAACATGCTT	15358-15380	32.65	16162-16184	97.00	41
CoV2ID283 Raw data Min-max	PCR primer forward	M-475-F	TGTGACATCAAGGACCTGCC	26997 - 27016	M	TGTGACATCAAGGACCTGCC	27068-27087	100.00	28806-28825	81.66	42
CoV2ID284 Raw data Min-max	PCR primer reverse	M-574-R	CTGAGTCACCTGCTACACGC	27077 - 27096	M	GCGTGTAGCAGGTGACTCAG	27148-27167	100.00	28886-28905	96.66	42
CoV2ID285 Raw data Min-max	Probe	M-507-P	TGTTGCTACATCACGAACGC	27029 - 27048	M	TGTTGCTACATCACGAACGC	27100-27119	100.00	28838-28857	89.89	42
CoV2ID286 Raw data Min-max	PCR primer forward	S-1850-F	GCACAGAAGTCCCTGTTGCT	23412 - 23431	S	GCACAGAAGTCCCTGTTGCT	23483-23502	100.00	25183-25202	86.65	42
CoV2ID287 Raw data Min-max	PCR primer reverse	S-1949-R	AAACAGCCTGCACGTGTTTG	23492 - 23511	S	CAAACACGTGCAGGCTGTTT	23563-23582	81.32	25263-25282	98.33	42
CoV2ID288 Raw data Min-max	Probe	S-1884-P	ACTTACTCCTACTTGGCGTGT	23446 - 23466	S	ACTTACTCCTACTTGGCGTGT	23517-23537	100.00	25217-25237	98.41	42
CoV2ID289 Raw data Min-max	LAMP outer forward primer	S1-F3	AGTTTGAGCCATCAACTCA	3084 - 3102	ORF1ab	AGTTTGAGCCATCAACTCA	3126-3144	32.02	3286-3304	88.07	43
CoV2ID290 Raw data Min-max	LAMP outer backward primer	S1-B3	TGAACCTCAACAATTGTTTGA	3271 - 3291	ORF1ab	TCAAACAATTGTTGAGGTTCA	3313-3333	100.00	3473-3493	98.41	43
CoV2ID291 Raw data Min-max	LAMP forward inner primer	S1-F1P	CAGGTTGAAGAGCAGCAGAAGTGTACTGAA(...)	3114 - 3135	ORF1ab	GTACTGAAGATGATTACCAAGG	3199-3221	32.38	3359-3381	71.26	43
CoV2ID292 Raw data Min-max	LAMP backward inner primer	S1-B1P	AGCAAGAAGAAGATTGGTTAGATGATGTCT(...)	3244 - 3262	ORF1ab	CAGTGAGGACAATCAGACA	3228-3254	32.70	3388-3414	100.00	43
CoV2ID293 Raw data Min-max	LAMP loop forward primer	S1-LPF	GGCACCAAATTCCAAAGGT	3139 - 3157	ORF1ab	ACCTTTGGAATTTGGTGCC	3181-3199	32.02	3341-3359	96.48	43
CoV2ID294 Raw data Min-max	LAMP loop backward primer	S1-LPB	AACTGTTGGTCAACAAGACGG	3223 - 3243	ORF1ab	AACTGTTGGTCAACAAGACGG	3265-3285	32.70	3425-3445	100.00	43
CoV2ID295 Raw data Min-max	LAMP outer forward primer	S2-F3	ATTCTAAGCACACGCCTAT	22173 - 22191	S	ATTCTAAGCACACGCCTAT	22244-22262	32.09	23808-23826	100.00	43
CoV2ID296 Raw data Min-max	LAMP outer backward primer	S2-B3	GAAGATAACCCACATAATAAGCT	22351 - 22373	S	AGCTTATTATGTGGGTTATCTTC	22422-22444	30.89	23993-24012	100.00	43
CoV2ID297 Raw data Min-max	LAMP forward inner primer	S2-F1P	ACCTATTGGCAAATCTACCAATGGTTTAGT(...)	22195 - 22213	S	TTTAGTGCGTGATCTCCCT	22304-22329	32.09	23868-23894	90.86	43
CoV2ID298 Raw data Min-max	LAMP backward inner primer	S2-B1P	ATCACTAGGTTTCAAACTTTACTTGCCTGT(...)	22322 - 22140	S	TCTTCTTCAGGTTGGACAG	22336-22361	32.09	23901-23926	87.18	43
CoV2ID299 Raw data Min-max	LAMP loop forward primer	S2-LPF	TTCTAAAGCCGAAAAACCCTG	22214 - 22234	S	CAGGGTTTTTCGGCTTTAGAA	22285-22305	32.06	23849-23869	95.23	43
CoV2ID300 Raw data Min-max	LAMP loop backward primer	S2-LPB	CATAGAAGTTATTTGACTCCTGGTG	22295 - 22319	S	CATAGAAGTTATTTGACTCCTGGTG	22366-22390	32.06	23931-23955	98.67	43
CoV2ID301 Raw data Min-max	LAMP outer forward primer	S3-F3	CACCTTATGGGTTGGGATT	15277 - 15295	ORF1ab	CACCTTATGGGTTGGGATT	15327-15345	32.70	16131-16149	98.24	43
CoV2ID302 Raw data Min-max	LAMP outer backward primer	S3-B3	AACATATAGTGAACCGCCA	15447 - 15465	ORF1ab	TGGCGGTTCACTATATGTT	15497-15515	100.00	16301-16319	91.58	43
CoV2ID303 Raw data Min-max	LAMP forward inner primer	S3-F1P	GTTTGCGAGCAAGAACAAGTGAATGTGATA(...)	15302 - 15320	ORF1ab	AATGTGATAGAGCCATGCC	15393-15414	100.00	16197-16218	95.44	43
CoV2ID304 Raw data Min-max	LAMP backward inner primer	S3-B1P	ATACAACGTGTTGTAGCTTGTCACACATGA(...)	15427 - 15448	ORF1ab	TTGAGTGAAATGGTCATGTGTG	15415-15440	100.00	16219-16244	89.48	43
CoV2ID305 Raw data Min-max	LAMP loop forward primer	S3-LPF	GGCCATAATTCTAAGCATGTTA	15321 - 15342	ORF1ab	TAACATGCTTAGAATTATGGCC	15371-15392	40.86	16175-16196	96.87	43
CoV2ID306 Raw data Min-max	LAMP loop backward primer	S3-LPB	ATTAGCTAATGAGTGTGCTCAAGTA	15402 - 15426	ORF1ab	ATTAGCTAATGAGTGTGCTCAAGTA	15452-15476	100.00	16256-16280	97.33	43
CoV2ID307 Raw data Min-max	LAMP outer forward primer	S4-F3	ACATGCTTAGAATTATGGCC	15323 - 15342	ORF1ab	ACATGCTTAGAATTATGGCC	15373-15392	41.01	16177-16196	96.55	43
CoV2ID308 Raw data Min-max	LAMP outer backward primer	S4-B3	GCTTGACAAATGTTAAAAACACT	15514 - 15536	ORF1ab	AGTGTTTTTAACATTTGTCAAGC	15564-15586	100.00	16368-16390	98.55	43
CoV2ID309 Raw data Min-max	LAMP forward inner primer	S4-F1P	TTGAGCACACTCATTAGCTAATCTATCACT(...)	15343 - 15361	ORF1ab	TCACTTGTTCTTGCTCGCA	15448-15473	100.00	16252-16277	96.15	43
CoV2ID310 Raw data Min-max	LAMP backward inner primer	S4-B1P	GAGTGAAATGGTCATGTGTGGCGCATAAGC(...)	15492 - 15509	ORF1ab	TGCCACAACTGCTTATGC	15479-15501	100.00	16283-16305	97.10	43
CoV2ID311 Raw data Min-max	LAMP loop forward primer	S4-LPF	GACAAGCTACAACACGTTGTATGT	15363 - 15386	ORF1ab	ACATACAACGTGTTGTAGCTTGTC	15413-15436	100.00	16217-16240	95.83	43
CoV2ID312 Raw data Min-max	LAMP loop backward primer	S4-LPB	ACTATATGTTAAACCAGGTGGAACC	15456 - 15480	ORF1ab	ACTATATGTTAAACCAGGTGGAACC	15506-15530	100.00	16310-16334	97.33	43
CoV2ID313 Raw data Min-max	LAMP outer forward primer	S5-F3	ATGGCCTCACTTGTTCTT	15337 - 15354	ORF1ab	ATGGCCTCACTTGTTCTT	15387-15404	90.57	16191-16208	89.62	43
CoV2ID314 Raw data Min-max	LAMP outer backward primer	S5-B3	TAACATTGGCCGTGACAG	15536 - 15553	ORF1ab	CTGTCACGGCCAATGTTA	15586-15603	100.00	16390-16407	98.15	43
CoV2ID315 Raw data Min-max	LAMP forward inner primer	S5-F1P	TTGAGCACACTCATTAGCTAATCTATGCTC(...)	15354 - 15372	ORF1ab	TGCTCGCAAACATACAACG	15448-15473	100.00	16252-16277	96.15	43
CoV2ID316 Raw data Min-max	LAMP backward inner primer	S5-B1P	GTCATGTGTGGCGGTTCACTACACTATTAG(...)	15497 - 15518	ORF1ab	CAACTGCTTATGCTAATAGTGT	15547-15568	100.00	16351-16372	98.48	43
CoV2ID317 Raw data Min-max	LAMP loop forward primer	S5-LPF	ACGGTGTGACAAGCTACAACA	15373 - 15393	ORF1ab	TGTTGTAGCTTGTCACACCGT	15423-15443	100.00	16227-16247	98.41	43
CoV2ID318 Raw data Min-max	LAMP loop backward primer	S5-LPB	CCAGGTGGAACCTCATCAGGAG	15469- 15490	ORF1ab	CCAGGTGGAACCTCATCAGGAG	15519-15540	100.00	16323-16344	96.97	43
CoV2ID319 Raw data Min-max	PCR primer forward	Smyrlaki_N1_F	GACCCCAAAATCAGCGAA	28287 - 28304	N	GACCCCAAAATCAGCGAA	28358-28375	100.00	30413-30431	82.80	44
CoV2ID320 Raw data Min-max	PCR primer forward	Smyrlaki_E_F	GGAAGAGACAGGTACGTTAATA	26262 - 26283	E	GGAAGAGACAGGTACGTTAATA	26333-26354	100.00	28070-28091	95.45	44
CoV2ID321 Raw data Min-max	PCR primer reverse	Smyrlaki_E_R	AGCAGTACGCACACAATCGAA	26354 - 26374	E	TTCGATTGTGTGCGTACTGCT	26425-26445	91.72	28162-28182	90.16	44
CoV2ID322 Raw data Min-max	PCR primer forward	Smyrlaki_RdRP_F	GTCATGTGTGGCGGTTCACT	15439 - 15458	ORF1ab	GTCATGTGTGGCGGTTCACT	15489-15508	100.00	16293-16312	98.33	44
CoV2ID323 Raw data Min-max	PCR primer reverse	Smyrlaki_RdRP_R	CAACACTATTAGCATAAGCAGTTGT	15519 - 15496	ORF1ab	ACAACTGCTTATGCTAATAGTGTT	15546-15569	100.00	16350-16373	98.61	44
CoV2ID324 Raw data Min-max	PCR primer forward	Li_S_F	TGTACTTGGACAATCAAAAAGAGTTGAT	24658 - 24685	S	TGTACTTGGACAATCAAAAAGAGTTGAT	24729-24756	100.00	26431-26458	98.81	45
CoV2ID325 Raw data Min-max	PCR primer reverse	Li_S_R	AGGAGCAGTTGTGAAGTTCTTTTC	24776 - 24799	S	GAAAAGAACTTCACAACTGCTCCT	24847-24870	32.70	26549-26572	93.05	45
CoV2ID326 Raw data Min-max	gRNA	N-gene gRNA #1	UAAUUUCUACUAAGUGUAGAUCCCCCAGCG(...)	29196 - 29215	N	CCCCCAGCGCTTCAGCGTTC	29267-29286	100.00	31479-31498	96.66	10
CoV2ID327 Raw data Min-max	gRNA	E-gene gRNA #2	UAAUUUCUACUAAGUGUAGAUGUGGUAUUC(...)	26314 - 26333	E	GTGGTATTCTTGCTAGTTAC	26385-26404	98.27	28122-28141	98.33	10
CoV2ID328 Raw data Min-max	gRNA	N-gene gRNA #2	UAAUUUCUACUAAGUGUAGAUGCAAUGUUG(...)	28756 - 28775	N	TCCTCAAGGAACAACATTGC	28827-28846	100.00	31038-31057	98.33	10
CoV2ID329 Raw data Min-max	gRNA	E-gene gRNA #1	UAAUUUCUACUAAGUGUAGAUUUGCUUUCG(...)	26306 - 26325	E	TTGCTTTCGTGGTATTCTTG	26377-26396	100.00	28114-28133	98.33	10
CoV2ID330 Raw data Min-max	PCR primer forward	SARS-CoV-2-15283-F	ATGGGTTGGGATTATCCTAAATG	15283 - 15305	ORF1ab	ATGGGTTGGGATTATCCTAAATG	15333-15355	32.70	16137-16159	100.00	46
CoV2ID331 Raw data Min-max	PCR primer reverse	SARS-CoV-2-15887-R	TGTTGAGAGCAAAATTCATG	15868 - 15887	ORF1ab	CATGAATTTTGCTCTCAACA	15920-15939	32.70	16725-16744	91.66	46
CoV2ID332 Raw data Min-max	PCR primer forward	SARS-CoV-2-15286-F	GGTTGGGATTATCCTAAATGTGA	15286 - 15308	ORF1ab	GGTTGGGATTATCCTAAATGTGA	15336-15358	32.70	16140-16162	100.00	46
CoV2ID333 Raw data Min-max	PCR primer reverse	SARS-CoV-2-15725-R	GCATCGTCAGAGAGTATCATCAT	15703 - 15725	ORF1ab	ATGATGATACTCTCTGACGATGC	15753-15775	100.00	16558-16580	97.10	46
CoV2ID334 Raw data Min-max	PCR primer forward	Wuhan-TM2020For	TCGTGCTACAACTTCCTCAAG	28743 - 28763	N	TCGTGCTACAACTTCCTCAAG	28814-28834	100.00	31025-31045	98.41	47
CoV2ID335 Raw data Min-max	PCR Probe	Wuhan-TM2020Probe	CCGCCTCTGCTCCCTTCTGC	28790 - 28809	N	GCAGAAGGGAGCAGAGGCGG	28861-28880	98.30	31072-31091	86.66	47
CoV2ID336 Raw data Min-max	PCR primer reverse	SARS2-28875R-G	CTGCCTGGAGTTGAATTTCTTG	28854 - 28875	N	CAAGAAATTCAACTCCAGGCAG	28925-28946	90.13	31136-31157	74.45	47
CoV2ID337 Raw data Min-max	PCR primer reverse	SARS2-28875R-A	CTGCCTGGAGTTGAATTTCTTA	28854 -28875	N	CAAGAAATTCAACTCCAGGCAG	28926-28946	98.35	31137-31157	82.15	47
CoV2ID338 Raw data Min-max	LAMP outer forward primer	ORF7a-F3	TCTTGGCACTGATAACACTC	27410 - 27429	ORF7a	TCTTGGCACTGATAACACTC	27481-27500	100.00	29221-29240	93.33	48
CoV2ID339 Raw data Min-max	LAMP outer backward primer	ORF7a-B3	GATCTGGCACGTAACTGAT	27617 - 27635	ORF7a	ATCAGTTACGTGCCAGATC	27688-27706	100.00	29429-29447	96.48	48
CoV2ID340 Raw data Min-max	LAMP forward inner primer	ORF7a-FIP	TCCAGAAGAGCAAGGTTCTTTTAAAGCTAC(...)	27430 - 27451	ORF7a	GCTACTTGTGAGCTTTATCACT	27554-27578	100.00	29294-29318	73.33	48
CoV2ID341 Raw data Min-max	LAMP backward inner primer	ORF7a-BIP	AGCTGATAACAAATTTGCACTGACGTTTTA(...)	27593 - 27610	ORF7a	GTCCTGACGGCGTAAAAC	27611-27634	100.00	29351-29374	94.44	48
CoV2ID342 Raw data Min-max	LAMP loop forward primer	ORF7a-LF	GTTGTACCTCTAACACACTCTTGGT	27452 - 27476	ORF7a	ACCAAGAGTGTGTTAGAGGTACAAC	27523-27547	100.00	29263-29287	92.00	48
CoV2ID343 Raw data Min-max	LAMP loop backward primer	ORF7a-LB	GCTTTAGCACTCAATTTGCTTTTGC	27566 - 27590	ORF7a	GCTTTAGCACTCAATTTGCTTTTGC	27637-27661	100.00	29377-29400	97.22	48
CoV2ID344 Raw data Min-max	LAMP LAMP outer forward primer	M-GENE-F3	AGTAATAGGTTTCCTATTCCTTAC	26588 - 26611	M	AGTAATAGGTTTCCTATTCCTTAC	26659-26682	100.00	28396-28419	98.61	48
CoV2ID345 Raw data Min-max	LAMP LAMP outer backward prime(...)	M-GENE-B3	AGCCACATCAAGCCTACA	26783 - 26800	M	TGTAGGCTTGATGTGGCT	26854-26871	100.00	28592-28609	100.00	48
CoV2ID346 Raw data Min-max	LAMP forward inner primer	M-GENE-FIP	GCCATAACAGCCAGACCAAAATTAATGGAT(...)	26613 - 26635	M	ATGGATTTGTCTTCTACAATTTGC	26683-26706	100.00	28420-28443	97.22	48
CoV2ID347 Raw data Min-max	LAMP backward inner primer	M-GENE-BIP	TTAGCTTGTTTTGTGCTTGCTGACAAGCCA(...)	267763 - 26780	M	GCTATCGCAATGGCTTGT	26777-26798	100.00	28515-28536	98.48	48
CoV2ID348 Raw data Min-max	LAMP loop forward primer	M-GENE-LF	CAAAAACCTATTCCTGTTGGCATAG	26636 - 26660	M	CTATGCCAACAGGAATAGGTTTTTG	26707-26731	100.00	28444-28469	85.63	48
CoV2ID349 Raw data Min-max	LAMP loop backward primer	M-GENE-LB	CAGAATAAATTGGATCACCGGTGGA	26735 - 26759	M	CAGAATAAATTGGATCACCGGTGGA	26806-26830	100.00	28544-28568	87.99	48
CoV2ID350 Raw data Min-max	LAMP loop backward primer	M-GENE-LB-2	GAATAAATTGGATCACCGGTGGA	26737 - 26759	M	GAATAAATTGGATCACCGGTGGA	26808-26830	100.00	28546-28568	95.65	48
CoV2ID351 Raw data Min-max	LAMP LAMP outer forward primer	ORF3a-A-F3	CACTTCAGACTATTACCAGCT	26013 - 26033	ORF3a	CACTTCAGACTATTACCAGCT	26084-26104	100.00	27821-27841	90.16	48
CoV2ID352 Raw data Min-max	LAMP LAMP outer backward prime(...)	ORF3a-A-B3	GCTTGTGCTTACAAAGGC	26211 - 26228	ORF3a	GCCTTTGTAAGCACAAGC	26282-26299	100.00	28019-28036	89.62	48
CoV2ID353 Raw data Min-max	LAMP forward inner primer	ORF3a-A-FIP	GTTCTTCAGGCTCATCAACAATTTTCTCAA(...)	26037 - 26059	ORF3a	CTCAACTCAATTGAGTACAGACA	26166-26190	100.00	27903-27927	97.33	48
CoV2ID354 Raw data Min-max	LAMP backward inner primer	ORF3a-A-BIP	CCAAATTCACACAATCGACGGTTTAGTAGT(...)	26189 - 26206	ORF3a	AACCGACGACGACTACTA	26195-26217	98.37	27932-27954	90.26	48
CoV2ID355 Raw data Min-max	LAMP loop forward primer	ORF3a-A-LF	TGAAGAAGGTAACATGTTCAACACC	26062 - 26086	ORF3a	GGTGTTGAACATGTTACCTTCTTCA	26133-26157	100.00	27870-27894	97.33	48
CoV2ID356 Raw data Min-max	LAMP loop backward primer	ORF3a-A-LB	CGGAGTTGTTAATCCAGTAATGGAA	26151 - 26175	ORF3a	CGGAGTTGTTAATCCAGTAATGGAA	26222-26246	94.57	27959-27983	77.33	48
CoV2ID357 Raw data Min-max	LAMP LAMP outer forward primer	ORF3a-B-F3	ATTTTGTTCGCGCTACTG	25472 - 25489	ORF3a	ATTTTGTTCGCGCTACTG	25543-25560	100.00	27246-27263	96.29	48
CoV2ID358 Raw data Min-max	LAMP LAMP outer backward prime(...)	ORF3a-B-B3	ACGAGCAAAAGGTGTGAG	25665 - 25682	ORF3a	CTCACACCTTTTGCTCGT	25736-25753	100.00	1178-1187	100.00	48
CoV2ID359 Raw data Min-max	LAMP forward inner primer	ORF3a-B-FIP	CTCTGAAAAACAGCAAGAAGAGCAAGATAC(...)	25494- 25513	ORF3a	GATACCGATACAAGCCTCAC	25560-25584	100.00	27263-27287	89.32	48
CoV2ID360 Raw data Min-max	LAMP backward inner primer	ORF3a-B-BIP	TAACCCTCAAAAAGAGATGGCAACAAACAA(...)	25635 - 25654	ORF3a	CAACTTGCTGTTGTTGTTTG	25651-25674	98.58	27354-27377	87.77	48
CoV2ID361 Raw data Min-max	LAMP loop forward primer	ORF3a-B-LF	ACAATAAGCCATCCGAAAGGGA	25514 - 25535	ORF3a	TCCCTTTCGGATGGCTTATTGT	25585-25606	91.79	27288-27309	88.78	48
CoV2ID362 Raw data Min-max	LAMP loop backward primer	ORF3a-B-LB	CACTCTCCAAGGGTGTTCACT	25607 - 25627	ORF3a	CACTCTCCAAGGGTGTTCACT	25678-25698	100.00	27381-27401	85.39	48
CoV2ID363 Raw data Min-max	LAMP forward inner primer	GENE-N-T7-FIP	TCTGGCCCAGTTCCTAGGTAGTTAATACGA(...)	28545 - 28563	N	CCAGACGAATTCGTGGTGG	28676-28697	100.00	30732-30753	96.97	48
CoV2ID364 Raw data Min-max	LAMP forward inner primer	ORF7-T7-FIP	TCCAGAAGAGCAAGGTTCTTTTAAATAATA(...)	27430 - 27451	ORF7	GCTACTTGTGAGCTTTATCACT	27554-27578	100.00	29294-29318	73.33	48
CoV2ID365 Raw data Min-max	LAMP forward inner primer	ORF3a-A-T7-FIP	GTTCTTCAGGCTCATCAACAATTTTTAATA(...)	26037 - 26059	ORF3a	CTCAACTCAATTGAGTACAGACA	26166-26190	100.00	27903-27927	97.33	48
CoV2ID366 Raw data Min-max	gRNA	Schermer_Orf1ab	GATTTAGACTACCCCAAAAACGAAGGGGAC(...)	6510 - 6537	ORF1ab	ATAGTTTAAAAATTACAGAAGAGGTTGG	6552-6579	100.00	6716-6743	98.81	48
CoV2ID367 Raw data Min-max	gRNA	Schermer_S Gene	GATTTAGACTACCCCAAAAACGAAGGGGAC(...)	22323 - 22350	S	CTTCTTCAGGTTGGACAGCTGGTGCTGC	22394-22421	30.98	23959-23986	88.56	48
CoV2ID368 Raw data Min-max	gRNA	Schermer_Gene-N	GATTTAGACTACCCCAAAAACGAAGGGGAC(...)	28626 - 28653	N	AAGCTGGACTTCCCTATGGTGCTAACAA	28697-28724	100.00	30753-30780	94.03	48
CoV2ID369 Raw data Min-max	gRNA	Schermer_Orf7	GATTTAGACTACCCCAAAAACGAAGGGGAC(...)	27509 - 27535	ORF7	CATACGAGGGCAATTCACCATTTCATCC	27580-27607	100.00	29320-29347	88.56	48
CoV2ID370 Raw data Min-max	gRNA	Schermer_Orf3	GATTTAGACTACCCCAAAAACGAAGGGGAC(...)	26107 - 26134	ORF3	GAGCCTGAAGAACATGTCCAAATTCACA	26178-26205	100.00	27915-27942	96.43	48
CoV2ID371 Raw data Min-max	RPA forward primer	Orf1ab-Fw_v1	GAAATTAATACGACTCACTATAGGGCGAAG(...)	6472 - 6501	ORF1ab	CGAAGTTGTAGGAGACATTATACTTAAACC	6514-6543	92.20	6678-6707	92.22	48
CoV2ID372 Raw data Min-max	RPA reverse primer	Orf1ab-Rev_v1	TAGTAAGACTAGAATTGTCTACATAAGCAG(...)	6554 - 6584	ORF1ab	GCTGCTTATGTAGACAATTCTAGTCTTACT(...)	6596-6626	100.00	6760-6790	91.18	48
CoV2ID373 Raw data Min-max	RPA forward primer	S-RPA-Fw_v1	GAAATAATACGACTCACTATAGGGAGGTTT(...)	22271 - 22300	S	AGGTTTCAAACTTTACTTGCTTTACATAGA	22342-22371	32.09	23907-23936	88.89	48
CoV2ID374 Raw data Min-max	RPA reverse primer	S-RPA-Rev_v1	TCCTAGGTTGAAGATAACCCACATAATAAG	22353 - 22382	S	CTTATTATGTGGGTTATCTTCAACCTAGGA	22424-22453	30.89	23993-24021	98.85	48
CoV2ID375 Raw data Min-max	PCR primer forward	Li_orf1ab_F	TGATGATACTCTCTGACGATGCTGT	15704 - 15728	ORF1ab	TGATGATACTCTCTGACGATGCTGT	15754-15778	100.00	16559-16583	97.33	49
CoV2ID376 Raw data Min-max	PCR primer reverse	Li_orf1ab_R	CTCAGTCCAACATTTTGCTTCAGA	15823 - 15846	ORF1ab	TCTGAAGCAAAATGTTGGACTGAG	15875-15898	32.70	16680-16703	100.00	49
CoV2ID377 Raw data Min-max	PCR Probe	Li_orf1ab_P	ATGCATCTCAAGGTCTAGTG	15749 - 15768	ORF1ab	ATGCATCTCAAGGTCTAGTG	15799-15818	100.00	16604-16623	96.65	49
CoV2ID378 Raw data Min-max	PCR primer forward	BTstin_ORF1ab_F	GGATCAAGAATCCTTTGGTGG	13213 - 13233	ORF1ab	GGATCAAGAATCCTTTGGTGG	13263-13283	96.77	14065-14085	96.82	50
CoV2ID379 Raw data Min-max	PCR primer reverse	BTstin_ORF1ab_R	GTCACAAAATCCTTTAGGATTTGGA	13273 - 13297	ORF1ab	TCCAAATCCTAAAGGATTTTGTGAC	13323-13347	100.00	14125-14149	92.00	50
CoV2ID380 Raw data Min-max	PCR Probe	BTstin_ORF1ab_P	CATCGTGTTGTCTGTACTGCCGTTGCC	13236 - 13262	ORF1ab	CATCGTGTTGTCTGTACTGCCGTTGCC	13286-13312	100.00	14088-14114	100.00	50
CoV2ID381 Raw data Min-max	PCR primer forward	WHCV-F1	CCAGGTAACAAACCAACCAACTT	20 -42	-	CCAGGTAACAAACCAACCAACTT	32-54	27.18	172-194	40.44	51
CoV2ID382 Raw data Min-max	PCR primer reverse	WHCV-R1	GGCAACCAACATAAGAGAACACAC	1491 - 1514	ORF1ab	GTGTGTTCTCTTATGTTGGTTGCC	1527-1550	32.70	1674-1697	98.61	51
CoV2ID383 Raw data Min-max	PCR primer forward	WHCV-F2	CAACCAAATGTGCCTTTCAACTC	1201 - 1223	ORF1ab	CAACCAAATGTGCCTTTCAACTC	1213-1235	100.00	1358-1381	95.83	51
CoV2ID384 Raw data Min-max	PCR primer reverse	WHCV-R2	CACAGTGTCATCACCAAAAGTAACCT	2730 - 2755	ORF1ab	AGGTTACTTTTGGTGATGACACTGTG	2772-2797	100.00	2932-2957	98.72	51
CoV2ID385 Raw data Min-max	PCR primer forward	WHCV-F3	TGTCACGCACTCAAAGGGATT	2392 - 2412	ORF1ab	TGTCACGCACTCAAAGGGATT	2434-2454	91.72	2582-2602	95.23	51
CoV2ID386 Raw data Min-max	PCR primer reverse	WHCV-R3	GACAGCTAAGTAGACATTTGTGCGAA	3771 - 3796	ORF1ab	TTCGCACAAATGTCTACTTAGCTGTC	3813-3838	98.69	3973-3998	93.58	51
CoV2ID387 Raw data Min-max	PCR primer forward	WHCV-F4	ATGCCATGCAAGTTGAATCTGAT	3507 - 3529	ORF1ab	ATGCCATGCAAGTTGAATCTGAT	3549-3571	98.52	3709-3731	100.00	51
CoV2ID388 Raw data Min-max	PCR primer reverse	WHCV-R4	TGCGTGTGGAGGTTAATGTTGT	4989 - 5010	ORF1ab	ACAACATTAACCTCCACACGCA	5031-5052	100.00	5193-5214	88.78	51
CoV2ID389 Raw data Min-max	PCR primer forward	WHCV-F5	GATCTCTCAAAGTGCCAGCTACAGT	4665 - 4689	ORF1ab	GATCTCTCAAAGTGCCAGCTACAGT	4707-4731	100.00	4869-4893	97.33	51
CoV2ID390 Raw data Min-max	PCR primer reverse	WHCV-R5	TTATAATCAATAGCCACCACATCACC	6158 - 6183	ORF1ab	GGTGATGTGGTGGCTATTGATTATAA	6200-6225	32.70	6364-6389	98.72	51
CoV2ID391 Raw data Min-max	PCR primer forward	WHCV-F6	AGAAACTTTGTATTGCATAGACGGTG	5791 - 5816	ORF1ab	AGAAACTTTGTATTGCATAGACGGTG	5833-5858	100.00	5997-6022	100.00	51
CoV2ID392 Raw data Min-max	PCR primer reverse	WHCV-R6	ACCAGTACAGTAAGAAGGCATGCC	7037 - 7060	ORF1ab	GGCATGCCTTCTTACTGTACTGGT	7079-7102	100.00	7246-7269	98.61	51
CoV2ID393 Raw data Min-max	PCR primer forward	WHCV-F7	GTTTAGCTGCTGTTAATAGTGTCCCTT	6642 - 6668	ORF1ab	GTTTAGCTGCTGTTAATAGTGTCCCTT	6684-6710	32.70	6848-6874	98.77	51
CoV2ID394 Raw data Min-max	PCR primer reverse	WHCV-R7	TGCAACTTCCGCACTATCACC	8006 - 8026	ORF1ab	GGTGATAGTGCGGAAGTTGCA	8053-8073	100.00	8223-8243	96.82	51
CoV2ID395 Raw data Min-max	PCR primer forward	WHCV-F8	TCCTACTGACCAGTCTTCTTACATCGT	7711 - 7737	ORF1ab	TCCTACTGACCAGTCTTCTTACATCGT	7758-7784	32.70	7927-7953	97.53	51
CoV2ID396 Raw data Min-max	PCR primer reverse	WHCV-R8	TTTCACAAGTGCCGTGCCTAC	9216 - 9236	ORF1ab	GTAGGCACGGCACTTGTGAAA	9264-9284	32.70	9589-9609	96.82	51
CoV2ID397 Raw data Min-max	PCR primer forward	WHCV-F9	GGTTTGCCTGGCACGATATTAC	8867 - 8888	ORF1ab	GGTTTGCCTGGCACGATATTAC	8915-8936	100.00	9240-9261	77.57	51
CoV2ID398 Raw data Min-max	PCR primer reverse	WHCV-R9	ACTTAGGTGTCTTAGGATTGGCTGTAT	10329 - 10355	ORF1ab	ATACAGCCAATCCTAAGACACCTAAGT	10377-10403	100.00	10859-10885	97.53	51
CoV2ID399 Raw data Min-max	PCR primer forward	WHCV-F10	TTGTCATCTCGCAAAGGCTCT	9958 - 9978	ORF1ab	TTGTCATCTCGCAAAGGCTCT	10006-10026	100.00	10332-10352	96.82	51
CoV2ID400 Raw data Min-max	PCR primer reverse	WHCV-R10	GAGATTATAAGAGCCCACATGGAAA	11457 - 11481	ORF1ab	TTTCCATGTGGGCTCTTATAATCTC	11505-11529	32.09	12148-12172	98.67	51
CoV2ID401 Raw data Min-max	PCR primer forward	WHCV-F11	GCTATGGGTATTATTGCTATGTCTGCT	11108 - 11134	ORF1ab	GCTATGGGTATTATTGCTATGTCTGCT	11156-11182	32.70	11643-11669	98.76	51
CoV2ID402 Raw data Min-max	PCR primer reverse	WHCV-R11	TGGATTTCCCACAATGCTGAT	12541 - 12561	ORF1ab	ATCAGCATTGTGGGAAATCCA	12589-12609	100.00	13236-13256	90.15	51
CoV2ID403 Raw data Min-max	PCR primer forward	WHCV-F12	CTGATCAAGCTATGACCCAAATGT	12279 - 12302	ORF1ab	CTGATCAAGCTATGACCCAAATGT	12327-12350	100.00	12972-12995	100.00	51
CoV2ID404 Raw data Min-max	PCR primer reverse	WHCV-R12	GCAACAGCTGGACAATCCTTAAGT	13707 - 13730	ORF1ab	ACTTAAGGATTGTCCAGCTGTTGC	13757-13780	100.00	14559-14582	97.20	51
CoV2ID405 Raw data Min-max	PCR primer forward	WHCV-F13	TCTGCGGTATGTGGAAAGGTTAT	13380 - 13402	ORF1ab	TCTGCGGTATGTGGAAAGGTTAT	13430-13452	97.05	14232-14254	90.39	51
CoV2ID406 Raw data Min-max	PCR primer reverse	WHCV-R13	GTCAGCAGCATACACAAGTAATTCCT	14546 - 14571	ORF1ab	AGGAATTACTTGTGTATGCTGCTGAC	14596-14621	32.70	15399-15424	90.77	51
CoV2ID407 Raw data Min-max	PCR primer forward	WHCV-F14	AGGGCTTTAACTGCAGAGTCACAT	14185 - 14208	ORF1ab	AGGGCTTTAACTGCAGAGTCACAT	14235-14258	100.00	15038-15061	97.22	51
CoV2ID408 Raw data Min-max	PCR primer reverse	WHCV-R14	GCGGACATACTTATCGGCAATT	15582 - 15603	ORF1ab	AATTGCCGATAAGTATGTCCGC	15632-15653	90.25	16437-16458	98.48	51
CoV2ID409 Raw data Min-max	PCR primer forward	WHCV-F15	TCAATAGCCGCCACTAGAGGAG	15172 - 15193	ORF1ab	TCAATAGCCGCCACTAGAGGAG	15222-15243	32.68	16025-16046	100.00	51
CoV2ID410 Raw data Min-max	PCR primer reverse	WHCV-R15	TCACCAGCATTTGTCCAGTCAC	16571 - 16592	ORF1ab	GTGACTGGACAAATGCTGGTGA	16642-16655	100.00	17603-17616	100.00	51
CoV2ID411 Raw data Min-max	PCR primer forward	WHCV-F16	TTGGGGCTTGTGTTCTTTGC	16241 - 16260	ORF1ab	TTGGGGCTTGTGTTCTTTGC	16293-16312	100.00	17099-17118	88.33	51
CoV2ID412 Raw data Min-max	PCR primer reverse	WHCV-R16	CAAGCAGGGTTACGTGTAAGGAAT	17730 - 17753	ORF1ab	ATTCCTTACACGTAACCCTGCTTG	17793-17816	98.41	18910-18933	87.60	51
CoV2ID413 Raw data Min-max	PCR primer forward	WHCV-F17	TGTCAATGCCAGATTACGTGCT	17394 - 17415	ORF1ab	TGTCAATGCCAGATTACGTGCT	17457-17478	98.45	18574-18595	98.45	51
CoV2ID414 Raw data Min-max	PCR primer reverse	WHCV-R17	TAACAAAGCACTCGTGGACAGC	18880 - 18901	ORF1ab	GCTGTCCACGAGTGCTTTGTTA	18943-18964	32.70	20102-20123	95.45	51
CoV2ID415 Raw data Min-max	PCR primer forward	WHCV-F18	TATGGGCACATGGCTTTGAGT	18593 - 18613	ORF1ab	TATGGGCACATGGCTTTGAGT	18656-18676	32.67	19815-19835	98.41	51
CoV2ID416 Raw data Min-max	PCR primer reverse	WHCV-R18	TAAGAACACCATTACGGGCATTT	20025 - 20047	ORF1ab	AAATGCCCGTAATGGTGTTCTTA	20088-20110	32.70	21406-21428	97.10	51
CoV2ID417 Raw data Min-max	PCR primer forward	WHCV-F19	TTGATGGACAACAGGGTGAAGTAC	19664 - 19687	ORF1ab	TTGATGGACAACAGGGTGAAGTAC	19727-19750	32.70	20889-20912	90.55	51
CoV2ID418 Raw data Min-max	PCR primer reverse	WHCV-R19	CGAAGTGTCCCATGAGCTTATAAA	21197 - 21220	ORF1ab	TTTATAAGCTCATGGGACACTTCG	21265-21288	100.00	22638-22661	98.61	51
CoV2ID419 Raw data Min-max	PCR primer forward	WHCV-F20	AGGAGTTGCACCAGGTACAGCT	20886 - 20907	ORF1ab	AGGAGTTGCACCAGGTACAGCT	20954-20975	100.00	22327-22348	98.48	51
CoV2ID420 Raw data Min-max	PCR primer reverse	WHCV-R20	ACCCACATAATAAGCTGCAGCAC	22344 - 22366	S	GTGCTGCAGCTTATTATGTGGGT	22415-22437	30.89	23980-24005	78.97	51
CoV2ID421 Raw data Min-max	PCR primer forward	WHCV-F21	CTATTAATTTAGTGCGTGATCTCCCTC	22188 - 22214	S	CTATTAATTTAGTGCGTGATCTCCCTC	22259-22285	32.09	23823-23849	80.49	51
CoV2ID422 Raw data Min-max	PCR primer reverse	WHCV-R21	AAATTTGTGGGTATGGCAATAGAGTTA	23689 - 23715	S	TAACTCTATTGCCATACCCACAAATTT	23760-23786	32.70	25460-25486	98.76	51
CoV2ID423 Raw data Min-max	PCR primer forward	WHCV-F22	ACTTACTCCTACTTGGCGTGTTTATTC	23446 - 23472	S	ACTTACTCCTACTTGGCGTGTTTATTC	23517-23543	100.00	25217-25243	98.77	51
CoV2ID424 Raw data Min-max	PCR primer reverse	WHCV-R22	GCATTAATGCCAGAGATGTCACC	25061 - 25083	S	GGTGACATCTCTGGCATTAATGC	25132-25154	32.03	26834-26856	90.43	51
CoV2ID425 Raw data Min-max	PCR primer forward	WHCV-F23	CTATCATCTTATGTCCTTCCCTCAGTC	24700 - 24726	S	CTATCATCTTATGTCCTTCCCTCAGTC	24771-24797	100.00	26473-26499	100.00	51
CoV2ID426 Raw data Min-max	PCR primer reverse	WHCV-R23	TAGTCGTCGTCGGTTCATCATAAAT	26179 - 26203	ORF3a	ATTTATGATGAACCGACGACGACTA	26250-26274	44.93	27987-28011	86.66	51
CoV2ID427 Raw data Min-max	PCR primer forward	WHCV-F24	TACTTCAGGTGATGGCACAACAA	25899 - 25921	ORF3a	TACTTCAGGTGATGGCACAACAA	25970-25992	100.00	27707-27729	86.07	51
CoV2ID428 Raw data Min-max	PCR primer reverse	WHCV-R24	AAGCTCACAAGTAGCGAGTGTTATCA	27419 - 27444	ORF7a	TGATAACACTCGCTACTTGTGAGCTT	27490-27515	100.00	29230-29255	82.82	51
CoV2ID429 Raw data Min-max	PCR primer forward	WHCV-F25	CGTGTAGCAGGTGACTCAGGTTT	27078 - 27100	M	CGTGTAGCAGGTGACTCAGGTTT	27149-27171	100.00	28887-28909	97.10	51
CoV2ID430 Raw data Min-max	PCR primer reverse	WHCV-R25	TACCGTCACCACCACGAATTC	28551 - 28571	N	GAATTCGTGGTGGTGACGGTA	28622-28642	100.00	30678-30698	100.00	51
CoV2ID431 Raw data Min-max	PCR primer forward	WHCV-F26	GGACCCCAAAATCAGCGAAAT	28286 - 28306	N	GGACCCCAAAATCAGCGAAAT	28357-28377	100.00	30412-30433	82.72	51
CoV2ID432 Raw data Min-max	PCR primer reverse	WHCV-R26	AAAATCACATGGGGATAGCACTACT	29824 - 29848	-	AGTAGTGCTATCCCCATGTGATTTT	29895-29919	29.31	34675-34698	33.31	51
CoV2ID433 Raw data Min-max	PCR primer forward	S1423F	GCCGGTAGCACACCTTGTAA	22985 - 23004	S	GCCGGTAGCACACCTTGTAA	23056-23075	32.09	24656-24675	96.66	51
CoV2ID434 Raw data Min-max	PCR primer reverse	S1736R2	GGATCACGGACAGCATCAGT	23279 - 23298	S	ACTGATGCTGTCCGTGATCC	23350-23369	100.00	25050-25069	88.33	51
CoV2ID435 Raw data Min-max	PCR primer forward	S2620F	ACTTCTGCACTGTTAGCGGG	24182 - 24201	S	ACTTCTGCACTGTTAGCGGG	24253-24272	32.70	25953-25972	100.00	51
CoV2ID436 Raw data Min-max	PCR primer reverse	S3174R2	ATGAGGTGCTGACTGAGGGA	24717 - 24736	S	TCCCTCAGTCAGCACCTCAT	24788-24807	100.00	26490-26509	100.00	51
CoV2ID437 Raw data Min-max	PCR primer reverse	S3240R1	GGCAGGAGCAGTTGTGAAGT	24783 - 24802	S	ACTTCACAACTGCTCCTGCC	24854-24873	32.70	26556-26575	93.33	51
CoV2ID438 Raw data Min-max	RACE primer	5-GSP	CCACATGAGGGACAAGGACACCAAGTG	573 - 599	ORF1ab	CACTTGGTGTCCTTGTCCCTCATGTGG	585-611	92.45	729-755	97.53	51
CoV2ID439 Raw data Min-max	RACE primer	5-GSPn	CATGACCATGAGGTGCAGTTCGAGC	491 - 515	ORF1ab	GCTCGAACTGCACCTCATGGTCATG	503-527	32.29	647-671	82.60	51
CoV2ID440 Raw data Min-max	RACE primer	3-GSP	TGTCGCGCATTGGCATGGAAGTCACACC	29223 - 29250	N	TGTCGCGCATTGGCATGGAAGTCACACC	29294-29321	98.79	31506-31533	91.66	51
CoV2ID441 Raw data Min-max	RACE primer	3-GSPn	CTCAAGCCTTACCGCAGAGACAGAAG	29409 - 29434	N	CTCAAGCCTTACCGCAGAGACAGAAG	29480-29505	32.09	31812-31837	92.30	51
CoV2ID442 Raw data Min-max	Target Generation primer	nsp10-Std-T7-F	TAATACGACTCACTATAGGGGTGGGGGACA(...)	13122 - 13141	ORF1ab	GTGGGGGACAACCAATCACT	13172-13191	100.00	13974-13993	100.00	52
CoV2ID443 Raw data Min-max	Target Generation primer	nsp10-Std-R	AGACGAGGTCTGCCATTGTG	13806 - 13825	ORF1ab	CACAATGGCAGACCTCGTCT	13856-13875	100.00	14658-14677	100.00	52
CoV2ID444 Raw data Min-max	Target Generation primer	RdRp-Std-T7-F	TAATACGACTCACTATAGGGAATAGAGCTC(...)	15093 - 15113	ORF1ab	GAATAGAGCTCGCACCGTAGC	15143-15163	32.70	15946-15966	100.00	52
CoV2ID445 Raw data Min-max	Target Generation primer	RdRp-Std-R	CATCTACAAAACAGCCGGCC	15957 - 15976	ORF1ab	GGCCGGCTGTTTTGTAGATG	16009-16028	32.70	16814-16834	95.23	52
CoV2ID446 Raw data Min-max	Target Generation primer	nsp14-Std-T7-F	TAATACGACTCACTATAGGGTAGTGCTAAA(...)	18447 - 18466	ORF1ab	TAGTGCTAAACCACCGCCTG	18510-18529	32.70	19669-19688	100.00	52
CoV2ID447 Raw data Min-max	Target Generation primer	nsp14-Std-R	AACTGCCACCATCACAACCA	19275 - 19294	ORF1ab	TGGTTGTGATGGTGGCAGTT	19338-19357	32.70	20500-20519	100.00	52
CoV2ID448 Raw data Min-max	Target Generation primer	E-Std-T7-F	TAATACGACTCACTATAGGGGCGTGCCTTT(...)	26207 - 26226	E	GCGTGCCTTTGTAAGCACAA	26278-26297	100.00	28015-28034	89.99	52
CoV2ID449 Raw data Min-max	Target Generation primer	E-Std-R	GGCAGGTCCTTGATGTCACA	26997 - 27016	E	TGTGACATCAAGGACCTGCC	27068-27087	100.00	28806-28825	81.66	52
CoV2ID450 Raw data Min-max	Target Generation primer	N-Std-T7-F	TAATACGACTCACTATAGGGGAATTGTGCG(...)	28068 - 28087	N	GAATTGTGCGTGGATGAGGC	28139-28158	98.24	30037-30055	89.77	52
CoV2ID451 Raw data Min-max	Target Generation primer	N-Std-R	TGTCTCTGCGGTAAGGCTTG	29411 - 29430	N	CAAGCCTTACCGCAGAGACA	29482-29501	32.09	31814-31833	89.99	52
CoV2ID452 Raw data Min-max	LAMP outer forward primer	Rohaim_ORF1ab_F3	CCGCCACTAGAGGAGCTACT	15179 - 15198	ORF1ab	CCGCCACTAGAGGAGCTACT	15229-15248	32.67	16032-16051	100.00	53
CoV2ID453 Raw data Min-max	LAMP outer backward primer	Rohaim_ORF1ab_B3	TGTTGTAGCTTGTCACAC	15373 - 15390	ORF1ab	TGTTGTAGCTTGTCACAC	15423-15440	100.00	16227-16244	98.15	53
CoV2ID454 Raw data Min-max	LAMP forward inner primer	Rohaim_ORF1ab_FIP	ATTGGAACAAGCAAATTCTATTATAGTGAT(...)	15255 - 15280	ORF1ab	TTATAGTGATGTAGAAAACCCTCACC	15305-15330	32.70	16108-16134	89.62	53
CoV2ID455 Raw data Min-max	LAMP backward inner primer	Rohaim_ORF1ab_BIP	TATGGGTTGGGATTATCCTAAATGTGCCTC(...)	15340 - 15358	ORF1ab	GCCTCACTTGTTCTTGCTC	15332-15357	32.70	16136-16161	100.00	53
CoV2ID456 Raw data Min-max	LAMP loop forward primer	Rohaim_ORF1ab_LF	GGTTGGCACAACATGTTAAAAAC	15229 - 15251	ORF1ab	GGTTGGCACAACATGTTAAAAAC	15279-15301	32.70	16082-16104	95.65	53
CoV2ID457 Raw data Min-max	LAMP loop backward primer	Rohaim_ORF1ab_LB	AGCCATGCCTAACATGCTTAG	15312 - 15332	ORF1ab	AGCCATGCCTAACATGCTTAG	15362-15382	32.65	16166-16186	96.72	53
CoV2ID458 Raw data Min-max	PCR primer forward	Rohaim_RdRP_F	GTGAAATGGTCATGTGTGGCGG	15431 - 15452	ORF1ab	GTGAAATGGTCATGTGTGGCGG	15481-15502	100.00	16285-16306	90.30	53
CoV2ID459 Raw data Min-max	PCR primer reverse	Rohaim_RdRP_R	TATGCTAATAGTGTTTTTAACATTTG	15505 - 15530	ORF1ab	TATGCTAATAGTGTTTTTAACATTTG	15555-15580	100.00	16359-16384	100.00	53
CoV2ID460 Raw data Min-max	RPA forward primer	S-RPA-Forward_v1	GAAATTAATACGACTCACTATAGGGAGGTT(...)	22271 - 22300	S	AGGTTTCAAACTTTACTTGCTTTACATAGA	22342-22371	32.09	23907-23936	88.89	54
CoV2ID461 Raw data Min-max	RPA forward primer	Orf1ab-RPA-Forward_v1	GAAATTAATACGACTCACTATAGGGCGAAG(...)	6472 - 6501	ORF1ab	CGAAGTTGTAGGAGACATTATACTTAAACC	6514-6543	92.20	6678-6707	92.22	54
CoV2ID462 Raw data Min-max	sgRNA	nCoV-RdRp-sgRNA R	ATGTGTGGCGGTTCACTATATGTatctaca(...)	15442 - 15464	RdRp	ATGTGTGGCGGTTCACTATATGT	15492-15514	100.00	16296-16318	98.55	55
CoV2ID463 Raw data Min-max	sgRNA	nCoV-ORF1b-sgRNA R	TGGTTGCTTTGTAGGTTACCTGTatctaca(...)	18787 - 18809	ORF1b	ACAGGTAACCTACAAAGCAACCA	18849-18872	32.70	20008-20031	95.82	55
CoV2ID464 Raw data Min-max	sgRNA	nCOV-ORF1ab-sgRNA R	GTCTGTACCGTCTGCGGTATGTGatctaca(...)	13370 - 13392	ORF1ab	GTCTGTACCGTCTGCGGTATGTG	13420-13442	91.86	14222-14244	98.55	55
CoV2ID465 Raw data Min-max	PCR primer forward	SARS-CoV-2_IBS_RdRP1_F	CATGTGTGGCGGTTCACTAT	15441 - 15460	RdRp	CATGTGTGGCGGTTCACTAT	15491-15510	100.00	16295-16314	98.33	56
CoV2ID466 Raw data Min-max	PCR primer reverse	SARS-CoV-2_IBS_RdRP1_R	TGCATTAACATTGGCCGTGA	15539 - 15558	RdRp	TCACGGCCAATGTTAATGCA	15589-15608	100.00	16393-16412	91.67	56
CoV2ID467 Raw data Min-max	PCR primer forward	SARS-CoV-2_IBS_S1_F	CTACATGCACCAGCAACTGT	23114 - 23133	S	CTACATGCACCAGCAACTGT	23185-23204	32.09	24785-24804	89.99	56
CoV2ID468 Raw data Min-max	PCR primer reverse	SARS-CoV-2_IBS_S1_R	CACCTGTGCCTGTTAAACCA	23194 - 23213	S	TGGTTTAACAGGCACAGGTG	23265-23284	32.70	24964-24983	98.33	56
CoV2ID469 Raw data Min-max	PCR primer forward	SARS-CoV-2_IBS_E1_F	TTCGGAAGAGACAGGTACGTT	26259 - 26279	E	TTCGGAAGAGACAGGTACGTT	26330-26350	100.00	28067-28087	93.65	56
CoV2ID470 Raw data Min-max	PCR primer reverse	SARS-CoV-2_IBS_E1_R	CACACAATCGATGCGCAGTA	26349 - 26365	E	TGCGCTTCGATTGTGTG	26417-26436	98.30	28154-28173	95.00	56
CoV2ID471 Raw data Min-max	PCR primer forward	SARS-CoV-2_IBS_N1_F	CAATGCTGCAATCGTGCTAC	28732 - 28751	N	CAATGCTGCAATCGTGCTAC	28803-28822	100.00	31014-31033	94.99	56
CoV2ID472 Raw data Min-max	PCR primer reverse	SARS-CoV-2_IBS_N1_R	GTTGCGACTACGTGATGAGG	28830 - 28849	N	CCTCATCACGTAGTCGCAAC	28901-28920	100.00	31112-31131	76.62	56
CoV2ID473 Raw data Min-max	PCR primer forward	SARS-CoV-2_IBS_RdRP2_F	AGAATAGAGCTCGCACCGTA	15092 - 15111	RdRp	AGAATAGAGCTCGCACCGTA	15142-15161	32.70	15945-15964	100.00	56
CoV2ID474 Raw data Min-max	PCR primer reverse	SARS-CoV-2_IBS_RdRP2_R	CTCCTCTAGTGGCGGCTATT	15174 -15193	RdRp	AATAGCCGCCACTAGAGGAG	15224-15243	32.67	16027-16046	100.00	56
CoV2ID475 Raw data Min-max	PCR primer forward	SARS-CoV-2_IBS_RdRP3_F	TCTGTGATGCCATGCGAAAT	14015 - 14034	RdRp	TCTGTGATGCCATGCGAAAT	14065-14084	100.00	14868-14887	91.67	56
CoV2ID476 Raw data Min-max	PCR primer reverse	SARS-CoV-2_IBS_RdRP3_R	ACTACCTGGCGTGGTTTGTA	14108 - 14127	RdRp	TACAAACCACGCCAGGTAGT	14158-14177	100.00	14961-14980	95.00	56
CoV2ID477 Raw data Min-max	PCR primer forward	SARS-CoV-2_IBS_S2_F	GCTGGTGCTGCAGCTTATTA	22340 - 22359	S	GCTGGTGCTGCAGCTTATTA	22411-22430	30.89	23976-23989	86.18	56
CoV2ID478 Raw data Min-max	PCR primer reverse	SARS-CoV-2_IBS_S2_R	AGGGTCAAGTGCACAGTCTA	22428 - 22447	S	TAGACTGTGCACTTGACCCT	22499-22518	30.86	24069-24088	88.33	56
CoV2ID479 Raw data Min-max	PCR primer forward	SARS-CoV-2_IBS_E2_F	TTCGGAAGAGACAGGTACGTTA	26259 - 26280	E	TTCGGAAGAGACAGGTACGTTA	26330-26351	100.00	28067-28088	93.94	56
CoV2ID480 Raw data Min-max	PCR primer reverse	SARS-CoV-2_IBS_E2_R	AGCAGTACGCACACAATCG	26356 - 26374	E	CGATTGTGTGCGTACTGCT	26427-26445	100.00	28164-28182	98.25	56
CoV2ID481 Raw data Min-max	PCR primer forward	SARS-CoV-2_IBS_N2_F	GCTGCAATCGTGCTACAACT	28736 - 28755	N	GCTGCAATCGTGCTACAACT	28807-28826	100.00	31018-31037	94.99	56
CoV2ID482 Raw data Min-max	PCR primer reverse	SARS-CoV-2_IBS_N2_R	TGAACTGTTGCGACTACGTG	28836 - 28855	N	CACGTAGTCGCAACAGTTCA	28907-28926	98.21	31118-31137	76.59	56
CoV2ID483 Raw data Min-max	PCR primer forward	Yip_RdRp_OTter_F	AGGTATTGGGAACCTGAGTTTTATGAGGCT(...)	16180 - 16219	RdRp	AGGTATTGGGAACCTGAGTTTTATGAGGCT(...)	16232-16271	78.77	17038-17077	98.33	57
CoV2ID484 Raw data Min-max	PCR primer reverse	Yip_RdRp_OTter_R	ACCTGGAGCATTGCAAACATACGGATTAAC(...)	16360 - 16398	RdRp	GTCTTGTCTGTTAATCCGTATGTTTGCAAT(...)	16412-16450	100.00	17218-17249	87.06	57
CoV2ID485 Raw data Min-max	PCR primer forward	Yip_RdRp_Inner_F	CGCATACAGTCTTRCAGGCT	16220 - 16239	RdRp	CGCATACAGTCTTACAGGCT	16272-16291	100.00	17078-17097	100.00	57
CoV2ID486 Raw data Min-max	PCR primer reverse	Yip_RdRp_Inner_R	GTGTGATGTTGAWATGACATGGTC	16330 - 16352	RdRp	GACCATGTCATATCAACATCACA	16382-16404	100.00	17188-17210	100.00	57
CoV2ID487 Raw data Min-max	PCR Probe	Yip_RdRp_probe	TTAAGATGTGGTGCTTGCATACGTAGAC	16276 - 16303	RdRp	TTAAGATGTGGTGCTTGCATACGTAGAC	16328-16355	100.00	17134-17161	97.61	57
CoV2ID488 Raw data Min-max	PCR primer forward	Yip_RdRp_OTter_F	AATTGCACAATTTGCCCCCAGCGCTTCA	29182 - 29209	N	AATTGCACAATTTGCCCCCAGCGCTTCA	29253-29280	100.00	31465-31492	96.43	57
CoV2ID489 Raw data Min-max	PCR primer reverse	Yip_RdRp_OTter_R	TGCGTCAATATGCTTATTCAGCAAAATGAC(...)	29310 - 29350	N	TCAAAGATCAAGTCATTTTGCTGAATAAGC(...)	29381-29421	100.00	31593-31633	97.56	57
CoV2ID490 Raw data Min-max	PCR primer forward	Yip_RdRp_Inner_F	GCGTTCTTCGGAATGTCG	29210 - 29227	N	GCGTTCTTCGGAATGTCG	29281-29298	100.00	31493-31510	91.48	57
CoV2ID491 Raw data Min-max	PCR primer reverse	Yip_RdRp_Inner_R	TTGGATCTTTGTCATCCAATTTG	29284 - 29306	N	CAAATTGGATGACAAAGATCCAA	29355-29377	97.02	31567-31589	94.19	57
CoV2ID492 Raw data Min-max	PCR Probe	Yip_RdRp_probe	AACGTGGTTGACCTACACAGST	29257 - 29278	N	AACGTGGTTGACCTACACAGGT	29328-29347	100.00	31540-31559	78.33	57