Database Reference | Number of sequences | Alignment length(nt) | Description | Percentage of identical sites | Percentage of pairwise identity | List of oligonucleotides |
---|---|---|---|---|---|---|
CoV2ID_alig01 | 106 | 30016 | All human SARS-CoV-2 complete genomes from the NCBI Virus resource (www.ncbi.nlm.nih.gov/labs/virus/), available at 18-03-2020. The multiple sequence alignment was performed using an optimized version of MUSCLE running at the NCBI Variation Resource. | 62.40% | 99.40% | Search |
CoV2ID_alig02 | 3251 | 34908 | All human SARS-CoV-2 complete genomes with high coverage from the GISAID initiative (www.gisaid.org/), downloaded at 01-05-2020. The multiple sequence alignment was performed using the default parameters of the MAFFT webserver (https://mafft.cbrc.jp/alignment/server/). | 88.60% | 99.96% | Search |
CoV2ID_alig03 | 7 | 38063 | Alignment of the consensus sequence of each human coronavirus. The consensus were obtained by aligning all complete available genomes for each virus obtained from the NCBI Virus resource (www.ncbi.nlm.nih.gov/labs/virus/)." | 14.70% | 45.30% | Search |