CoV2ID001 |
PCR primer forward |
China_CDC_Meta1_F |
CCCTGTGGGTTTTACACTTAA |
13342-13362 | ORF1ab |
CCCTGTGGGTTTTACACTTAA |
6626-6635 | 0 |
0 |
28.57 |
9.52 |
1 |
CoV2ID002 |
PCR primer reverse |
China_CDC_Meta1_R |
ACGATTGTGCATCAGCTGA |
13442-13460 | ORF1ab |
TCAGCTGATGCACAATCGT |
16679-16697 | 10.53 |
0 |
51.63 |
20.72 |
1 |
CoV2ID003 |
Probe |
China_CDC_Meta1_P |
CCGTCTGCGGTATGTGGAAAGGTTATGG |
13377-13404 | ORF1ab |
CCGTCTGCGGTATGTGGAAAGGTTATGG |
16604-16631 | 28.57 |
20 |
60.54 |
36.37 |
1 |
CoV2ID004 |
PCR primer forward |
China_CDC_Meta2_F |
GGGGAACTTCTCCTGCTAGAAT |
28881-28902 | N |
GGGGAACTTCTCCTGCTAGAAT |
36660-36681 | 0 |
0 |
45.24 |
15.08 |
1 |
CoV2ID005 |
PCR primer reverse |
China_CDC_Meta2_R |
CAGACATTTTGCTCTCAAGCTG |
28958-28979 | N |
CAGCTTGAGAGCAAAATGTCTG |
36746-36767 | 4.55 |
20 |
38.31 |
20.95 |
1 |
CoV2ID006 |
Probe |
China_CDC_Meta2_P |
TTGCTGCTGCTTGACAGATT |
28934-28953 | N |
TTGCTGCTGCTTGACAGATT |
36714-36731 | 0 |
0 |
36.77 |
12.26 |
1 |
CoV2ID007 |
PCR primer forward |
Charite_RdRP_SARSr-F2 |
GTGARATGGTCATGTGTGGCGG |
15431-15452 | ORF1ab |
GTGAAATGGTCATGTGTGGCGG |
18688-18709 | 31.82 |
40 |
65.37 |
45.73 |
2 |
CoV2ID008 |
PCR primer reverse |
Charite_RdRP_SARSr-R1 |
CARATGTTAAASACACTATTAGCATA |
15505-15530 | ORF1ab |
TATGCTAATAGTGTTTTTAACATTTG |
18762-18787 | 57.69 |
60 |
80.22 |
65.97 |
2 |
CoV2ID009 |
Probe |
Charite_RdRP_SARSr-P2 |
CAGGTGGAACCTCATCAGGAGATGC |
15470-15494 | ORF1ab |
CAGGTGGAACCTCATCAGGAGATGC |
18727-18751 | 52 |
80 |
73.14 |
68.38 |
2 |
CoV2ID010 |
Probe |
Charite_RdRP_SARSr-P1 |
CCAGGTGGWACRTCATCMGGTGATGC |
15469-15494 | ORF1ab |
CCAGGTGGAACCTCATCAGGAGATGC |
18726-18751 | 53.85 |
80 |
74.18 |
69.34 |
2 |
CoV2ID011 |
PCR primer forward |
Charite_E_Sarbeco_F1 |
ACAGGTACGTTAATAGTTAATAGCGT |
26269-26294 | E |
ACAGGTACGTTAATAGTTAATAGCGT |
33931-33956 | 3.85 |
20 |
33.15 |
19 |
2 |
CoV2ID012 |
PCR primer reverse |
Charite_E_Sarbeco_R2 |
ATATTGCAGCAGTACGCACACA |
26360-26381 | E |
TGTGTGCGTACTGCTGCAATAT |
34022-34043 | 18.18 |
80 |
49.35 |
49.18 |
2 |
CoV2ID013 |
Probe |
Charite_E_Sarbeco_P1 |
ACACTAGCCATCCTTACTGCGCTTCG |
26332-26357 | E |
ACACTAGCCATCCTTACTGCGCTTCG |
33994-34019 | 19.23 |
20 |
49.63 |
29.62 |
2 |
CoV2ID014 |
PCR primer forward |
HKU-ORF1b-nsp14F |
TGGGGYTTTACRGGTAACCT |
18778-18797 | ORF1ab |
TGGGGTTTTACAGGTAACCT |
22057-22076 | 50 |
20 |
74.05 |
48.02 |
3 |
CoV2ID015 |
PCR primer reverse |
HKU- ORF1b-nsp14R |
AACRCGCTTAACAAAGCACTC |
18889-18909 | ORF1b-nsp15 |
GAGTGCTTTGTTAAGCGTGTT |
22168-22188 | 38.1 |
40 |
68.48 |
48.86 |
3 |
CoV2ID016 |
Probe |
HKU-ORF1b-nsp141P |
TAGTTGTGATGCWATCATGACTAG |
18849-18872 | ORF1b-nsp16 |
TAGTTGTGATGCAATCATGACTAG |
22128-22151 | 54.17 |
60 |
74.8 |
62.99 |
3 |
CoV2ID017 |
PCR primer forward |
HKU-NF |
TAATCAGACAAGGAACTGATTA |
29145-29166 | N |
TAATCAGACAAGGAACTGATTA |
37013-37034 | 18.18 |
0 |
53.46 |
23.88 |
3 |
CoV2ID018 |
PCR primer reverse |
HKU-NR |
CGAAGGTGTGACTTCCATG |
29236-29254 | N |
CATGGAAGTCACACCTTCG |
37104-37122 | 0 |
0 |
30.33 |
10.11 |
3 |
CoV2ID019 |
Probe |
HKU-NP |
GCAAATTGTGCAATTTGCGG |
29177-29196 | N |
CCGCAAATTGCACAATTTGC |
37045-37064 | 40 |
20 |
66.19 |
42.06 |
3 |
CoV2ID020 |
PCR primer forward |
WH-NIC N-F |
CGTTTGGTGGACCCTCAGAT |
28320-28339 | N |
CGTTTGGTGGACCCTCAGAT |
36078-36097 | 10 |
20 |
48.57 |
26.19 |
4 |
CoV2ID021 |
PCR primer reverse |
WH-NIC N-R |
CCCCACTGCGTTCTCCATT |
28358-28376 | N |
AATGGAGAACGCAGTGGGG |
36116-36134 | 10.53 |
20 |
51.88 |
27.47 |
4 |
CoV2ID022 |
Probe |
WH-NIC N-P |
CAACTGGCAGTAACCA |
28341-28356 | N |
CAACTGGCAGTAACCA |
36099-36114 | 6.25 |
0 |
41.07 |
15.77 |
4 |
CoV2ID023 |
PCR primer forward |
NIID_WH-1_F501 |
TTCGGATGCTCGAACTGCACC |
484-504 | ORF1ab |
TTCGGATGCTCGAACTGCACC |
924-942 | 0 |
0 |
35.59 |
11.86 |
5 |
CoV2ID024 |
PCR primer reverse |
NIID_WH-1_R913 |
CTTTACCAGCACGTGCTAGAAGG |
874-896 | ORF1ab |
CCTTCTAGCACGTGCTGGTAAAG |
1472-1494 | 13.04 |
0 |
50.93 |
21.32 |
5 |
CoV2ID025 |
PCR primer forward |
NIID_WH-1_F509 |
CTCGAACTGCACCTCATGG |
492-510 | ORF1ab |
CTCGAACTGCACCTCATGG |
930-948 | 5.26 |
0 |
41.85 |
15.7 |
5 |
CoV2ID026 |
PCR primer reverse |
NIID_WH-1_R854 |
CAGAAGTTGTTATCGACATAGC |
816-837 | ORF1ab |
GCTATGTCGATAACAACTTCTG |
1421-1435 | 0 |
0 |
40.95 |
13.65 |
5 |
CoV2ID027 |
PCR primer forward |
NIID_WH-1_Seq_F519 |
ACCTCATGGTCATGTTATGG |
502-521 | ORF1ab |
ACCTCATGGTCATGTTATGG |
940-957 | 16.67 |
20 |
51.06 |
29.24 |
5 |
CoV2ID028 |
PCR primer reverse |
NIID_WH-1_Seq_R840 |
GACATAGCGAGTGTATGCC |
805-823 | ORF1ab |
GGCATACACTCGCTATGTC |
1385-1402 | 5.56 |
0 |
48.68 |
18.08 |
5 |
CoV2ID029 |
PCR primer forward |
WuhanCoV-spk1-f |
TTGGCAAAATTCAAGACTCACTTT |
24354-24377 | S |
TTGGCAAAATTCAAGACTCACTTT |
30628-30650 | 17.39 |
20 |
48.86 |
28.75 |
5 |
CoV2ID030 |
PCR primer reverse |
WuhanCoV-spk2-r |
TGTGGTTCATAAAAATTCCTTTGTG |
24876-24900 | S |
CACAAAGGAATTTTTATGAACCACA |
31216-31240 | 16 |
20 |
51.24 |
29.08 |
5 |
CoV2ID031 |
PCR primer forward |
NIID_WH-1_F24381 |
TCAAGACTCACTTTCTTCCAC |
24364-24384 | S |
TCAAGACTCACTTTCTTCCAC |
30638-30650 | 7.69 |
20 |
46.15 |
24.61 |
5 |
CoV2ID032 |
PCR primer reverse |
NIID_WH-1_R24873 |
ATTTGAAACAAAGACACCTTCAC |
24834-24856 | S |
GTGAAGGTGTCTTTGTTTCAAAT |
31159-31177 | 10.53 |
0 |
52.63 |
21.05 |
5 |
CoV2ID033 |
PCR primer forward |
NIID_WH-1_Seq_F24383 |
AAGACTCACTTTCTTCCACAG |
24366-24386 | S |
AAGACTCACTTTCTTCCACAG |
30640-30650 | 9.09 |
20 |
45.45 |
24.85 |
5 |
CoV2ID034 |
PCR primer reverse |
NIID_WH-1_Seq_R24865 |
CAAAGACACCTTCACGAGG |
24830-24848 | S |
CCTCGTGAAGGTGTCTTTG |
31155-31173 | 5.26 |
0 |
51.88 |
19.05 |
5 |
CoV2ID035 |
PCR primer forward |
NIID_2019-nCOV_N_F2 |
AAATTTTGGGGACCAGGAAC |
29125-29144 | N |
AAATTTTGGGGACCAGGAAC |
36993-37012 | 25 |
0 |
59.52 |
28.17 |
5 |
CoV2ID036 |
PCR primer reverse |
NIID_2019-nCOV_N_R2 |
TGGCAGCTGTGTAGGTCAAC |
29263-29282 | N |
GTTGACCTACACAGGTGCCA |
37159-37178 | 10 |
0 |
45.48 |
18.49 |
5 |
CoV2ID037 |
Probe |
NIID_2019-nCOV_N_P2 |
ATGTCGCGCATTGGCATGGA |
29222-29241 | N |
ATGTCGCGCATTGGCATGGA |
37090-37109 | 5 |
0 |
41.19 |
15.4 |
5 |
CoV2ID038 |
PCR primer forward |
CDC_2019-nCoV_N1-F |
GACCCCAAAATCAGCGAAAT |
28287-28306 | N |
GACCCCAAAATCAGCGAAAT |
36045-36064 | 0 |
0 |
52.38 |
17.46 |
6 |
CoV2ID039 |
PCR primer reverse |
CDC_2019-nCoV_N1-R |
TCTGGTTACTGCCAGTTGAATCTG |
28335-28358 | N |
CAGATTCAACTGGCAGTAACCAGA |
36093-36116 | 12.5 |
20 |
46.03 |
26.18 |
6 |
CoV2ID040 |
Probe |
CDC_2019-nCoV_N1-P |
ACCCCGCATTACGTTTGGTGGACC |
28309-28332 | N |
ACCCCGCATTACGTTTGGTGGACC |
36067-36090 | 4.17 |
0 |
49.8 |
17.99 |
6 |
CoV2ID041 |
PCR primer forward |
CDC_2019-nCoV_N2-F |
TTACAAACATTGGCCGCAAA |
29164-29183 | N |
TTACAAACATTGGCCGCAAA |
37032-37051 | 15 |
0 |
51.43 |
22.14 |
6 |
CoV2ID042 |
PCR primer reverse |
CDC_2019-nCoV_N2-R |
GCGCGACATTCCGAAGAA |
29213-29230 | N |
TTCTTCGGAATGTCGCGC |
37081-37098 | 11.11 |
40 |
48.15 |
33.09 |
6 |
CoV2ID043 |
Probe |
CDC_2019-nCoV_N2-P |
ACAATTTGCCCCCAGCGCTTCAG |
29188-29210 | N |
ACAATTTGCCCCCAGCGCTTCAG |
37056-37078 | 21.74 |
20 |
55.28 |
32.34 |
6 |
CoV2ID044 |
PCR primer forward |
CDC_2019-nCoV_N3-F |
GGGAGCCTTGAATACACCAAAA |
28681-28702 | N |
GGGAGCCTTGAATACACCAAAA |
36439-36460 | 0 |
0 |
45.45 |
15.15 |
6 |
CoV2ID045 |
PCR primer reverse |
CDC_2019-nCoV_N3-R |
TGTAGCACGATTGCAGCATTG |
28732-28752 | N |
CAATGCTGCAATCGTGCTACA |
36490-36510 | 0 |
0 |
44.67 |
14.89 |
6 |
CoV2ID046 |
Probe |
CDC_2019-nCoV_N3-P |
AYCACATTGGCACCCGCAATCCTG |
28704-28727 | N |
ATCACATTGGCACCCGCAATCCTG |
36464-36485 | 0 |
0 |
41.13 |
13.71 |
6 |
CoV2ID047 |
PCR primer forward |
Pasteur_nCoV_IP2-12669Fw |
ATGAGCTTAGTCCTGTTG |
12690-12707 | ORF1ab |
ATGAGCTTAGTCCTGTTG |
15917-15934 | 44.44 |
0 |
65.34 |
36.59 |
7 |
CoV2ID048 |
PCR primer reverse |
Pasteur_nCoV_IP2-12759Rv |
CTCCCTTTGTTGTGTTGT |
12780-12797 | ORF1ab |
ACAACACAACAAAGGGAG |
16007-16024 | 11.11 |
40 |
49.74 |
33.62 |
7 |
CoV2ID049 |
Probe |
Pasteur_nCoV_IP2-12696bProbe |
AGATGTCTTGTGCTGCCGGTA |
12717-12737 | ORF1ab |
AGATGTCTTGTGCTGCCGGTA |
15944-15964 | 4.76 |
20 |
42.86 |
22.54 |
7 |
CoV2ID050 |
PCR primer forward |
Pasteur_nCoV_IP4-14059Fw |
GGTAACTGGTATGATTTCG |
14080-14098 | ORF1ab |
GGTAACTGGTATGATTTCG |
17334-17352 | 63.16 |
60 |
81.7 |
68.29 |
7 |
CoV2ID051 |
PCR primer reverse |
Pasteur_nCoV_IP4-14146Rv |
CTGGTCAAGGTTAATATAGG |
14167-14186 | ORF1ab |
CCTATATTAACCTTGACCAG |
17421-17440 | 30 |
80 |
59.76 |
56.59 |
7 |
CoV2ID052 |
Probe |
Pasteur_nCoV_IP4-14084Probe |
TCATACAAACCACGCCAGG |
14105-14123 | ORF1ab |
TCATACAAACCACGCCAGG |
17359-17377 | 15.79 |
40 |
51.38 |
35.72 |
7 |
CoV2ID053 |
PCR primer forward |
RBD-qF1 |
CAATGGTTTAACAGGCACAGG |
23191 - 23211 | S |
CAATGGTTTAACAGGCACAGG |
29268-29288 | 38.1 |
40 |
63.49 |
47.2 |
8 |
CoV2ID054 |
PCR primer reverse |
RBD-qR1 |
CTCAAGTGTCTGTGGATCACG |
23291 - 23311 | S |
CGTGATCCACAGACACTTGAG |
29383-29403 | 4.76 |
0 |
49.21 |
17.99 |
8 |
CoV2ID055 |
PCR primer forward |
ND-CoVs-951F |
TGTKAGRTTYCCTAAYATTAC |
22540 - 22560 | S |
TGTTAGATTTCCTAATATTAC |
28195-28215 | 19.05 |
0 |
48.98 |
22.68 |
8 |
CoV2ID056 |
PCR primer reverse |
D-CoVs-1805R |
ACATCYTGATANARAACAGC |
23387 - 23406 | S |
GCTGTTCTTTATCAGGATGT |
29479-29498 | 5 |
20 |
54.76 |
26.59 |
8 |
CoV2ID057 |
PCR primer forward |
nCoV_2019 Forward |
CAAATTCTATGGTGGTTGGCACA |
15216 - 15238 | ORF1ab |
CAAATTCTATGGTGGTTGGCACA |
18473-18495 | 65.22 |
40 |
80.95 |
62.06 |
9 |
CoV2ID058 |
PCR primer reverse |
nCoV_2019 Reverse |
GGCATGGCTCTATCACATTTAGG |
15298 - 15320 | ORF1ab |
CCTAAATGTGATAGAGCCATGCC |
18555-18577 | 69.57 |
80 |
87.58 |
79.05 |
9 |
CoV2ID059 |
Probe |
CoV_Probe |
ATAATCCCAACCCATRAG |
15280 - 15297 | ORF1ab |
CTTATGGGTTGGGATTAT |
18537-18554 | 72.22 |
60 |
90.74 |
74.32 |
9 |
CoV2ID060 |
Target Generation |
N-gene-FWD IVT |
AATTCTAATACGACTCACTATAGGGCCAAATTGGCTACTACCGAAGAGCTAC |
28519 - 28545 | N |
CCAAATTGGCTACTACCGAAGAGCTAC |
36277-36303 | 7.41 |
20 |
44.09 |
23.83 |
10 |
CoV2ID061 |
Target Generation |
N-gene-REV IVT |
CACAGTTTGCTGTTTCTTCTGTCTCTGCGG |
29420 - 29449 | N |
CCGCAGAGACAGAAGAAACAGCAAACTGTG |
37350-37379 | 6.67 |
0 |
42.7 |
16.46 |
10 |
CoV2ID062 |
Target Generation |
E-gene-FWD IVT |
AATTCTAATACGACTCACTATAGGGCTGGTGTTGAACATGTTACCTTCTTCATC |
26060 - 26088 | E |
CTGGTGTTGAACATGTTACCTTCTTCATC |
33630-33658 | 17.24 |
0 |
49.75 |
22.33 |
10 |
CoV2ID063 |
Target Generation |
E-gene-REV IVT |
CCTATTACTAGGTTCCATTGTTC |
26574 - 26596 | E |
GAACAATGGAACCTAGTAATAGG |
34280-34303 | 29.17 |
0 |
60.91 |
30.03 |
10 |
CoV2ID064 |
LAMP outer forward primer |
F3 2019-nCoV N-gene |
AACACAAGCTTTCGGCAG |
29083 - 29100 | N |
AACACAAGCTTTCGGCAG |
36951-36968 | 33.33 |
40 |
58.99 |
44.11 |
10 |
CoV2ID065 |
LAMP outer backward primer |
B3 2019-nCoV N-gene |
GAAATTTGGATCTTTGTCATCC |
29290 - 29311 | N |
GGATGACAAAGATCCAAATTTC |
37215-37232 | 22.22 |
40 |
49.74 |
37.32 |
10 |
CoV2ID066 |
LAMP backward inner primer |
BIP 2019-nCoV N-gene |
TGCGGCCAATGTTTGTAATCAGCCAAGGAAATTTTGGGGAC |
29119 - 29137 | N |
CCAAGGAAATTTTGGGGAC |
37028-37049 | 18.18 |
20 |
56.06 |
31.41 |
10 |
CoV2ID067 |
LAMP forward inner primer |
FIP 2019-nCoV N-gene |
CGCATTGGCATGGAAGTCACTTTGATGGCACCTGTGTAG |
29269 - 29287 | N |
CTACACAGGTGCCATCAAA |
37096-37115 | 5 |
0 |
38.1 |
14.37 |
10 |
CoV2ID068 |
LAMP loop forward primer |
LF 2019-nCoV N-gene |
TTCCTTGTCTGATTAGTTC |
29141 - 29159 | N |
GAACTAATCAGACAAGGAA |
37009-37027 | 15.79 |
40 |
51.13 |
35.64 |
10 |
CoV2ID069 |
LAMP loop backward primer |
LB 2019-nCoV N-gene |
ACCTTCGGGAACGTGGTT |
29248 - 29265 | N |
ACCTTCGGGAACGTGGTT |
37151-37161 | 0 |
0 |
42.42 |
14.14 |
10 |
CoV2ID070 |
LAMP outer forward primer |
F3 2019-nCoV E-gene |
CCGACGACGACTACTAGC |
26191 - 26208 | E |
CCGACGACGACTACTAGC |
33799-33816 | 0 |
0 |
40.21 |
13.4 |
10 |
CoV2ID071 |
LAMP outer backward primer |
B3 2019-nCoV E-gene |
AGAGTAAACGTAAAAAGAAGGTT |
26402 - 26424 | E |
AACCTTCTTTTTACGTTTACTCT |
34064-34086 | 21.74 |
40 |
54.45 |
38.73 |
10 |
CoV2ID072 |
LAMP backward inner primer |
BIP 2019-nCoV E-gene |
ACCTGTCTCTTCCGAAACGAATTTGTAAGCACAAGCTGATG |
26214 - 26233 | E |
TTTGTAAGCACAAGCTGATG |
33915-33936 | 0 |
0 |
29.22 |
9.74 |
10 |
CoV2ID073 |
LAMP forward inner primer |
FIP 2019-nCoV E-gene |
CTAGCCATCCTTACTGCGCTACTCACGTTAACAATATTGCA |
26374 - 26394 | E |
TGCAATATTGTTAACGTGAGT |
34036-34056 | 4.76 |
0 |
43.08 |
15.95 |
10 |
CoV2ID074 |
LAMP loop forward primer |
LF 2019-nCoV E-gene |
TCGATTGTGTGCGTACTGC |
26355 - 26373 | E |
TCGATTGTGTGCGTACTGC |
34017-34035 | 26.32 |
0 |
56.89 |
27.74 |
10 |
CoV2ID075 |
LAMP loop backward primer |
LB 2019-nCoV E-gene |
TGAGTACATAAGTTCGTAC |
26235 - 26253 | E |
GTACGAACTTATGTACTCA |
33900-33915 | 0 |
0 |
29.46 |
9.82 |
10 |
CoV2ID076 |
PCR primer forward |
N_Sarbeco_F |
CACATTGGCACCCGCAATC |
28706 - 28724 | N |
CACATTGGCACCCGCAATC |
36464-36482 | 0 |
0 |
39.85 |
13.28 |
11 |
CoV2ID077 |
PCR primer reverse |
N_Sarbeco_R |
GAGGAACGAGAAGAGGCTTG |
28814 - 28833 | N |
CAAGCCTCTTCTCGTTCCTC |
36572-36591 | 20 |
0 |
56.9 |
25.63 |
11 |
CoV2ID078 |
Probe |
N_Sarbeco_P |
ACTTCCTCAAGGAACAACATTGCCA |
28753 - 28777 | N |
ACTTCCTCAAGGAACAACATTGCCA |
36511-36535 | 0 |
0 |
50.48 |
16.83 |
11 |
CoV2ID079 |
PCR primer forward |
nsp2f |
ATGCATTTGCATCAGAGGCT |
1866 - 1885 | ORF1ab |
ATGCATTTGCATCAGAGGCT |
2946-2965 | 0 |
0 |
37.62 |
12.54 |
12 |
CoV2ID080 |
PCR primer reverse |
nsp2r |
TTGTTATAGCGGCCTTCTGT |
1951 - 1970 | ORF1ab |
ACAGAAGGCCGCTATAACAA |
3228-3247 | 0 |
0 |
41.19 |
13.73 |
12 |
CoV2ID081 |
PCR primer forward |
N_gene_Taq1 |
TCTGGTAAAGGCCAACAACAA |
28976 - 28996 | N |
TCTGGTAAAGGCCAACAACAA |
36764-36784 | 0 |
0 |
32.65 |
10.88 |
13 |
CoV2ID082 |
PCR primer reverse |
N_gene_Taq2 |
TGTATGCTTTAGTGGCAGTACG |
29057 - 29078 | N |
CGTACTGCCACTAAAGCATACA |
36919-36934 | 18.75 |
20 |
56.55 |
31.77 |
13 |
CoV2ID083 |
Probe |
N_gene_Probe |
CTGTCACTAAGAAATCTGCTGCTGAGGC |
29007 - 29034 | N |
CTGTCACTAAGAAATCTGCTGCTGAGGC |
36839-36869 | 12.9 |
0 |
53.15 |
22.02 |
13 |
CoV2ID084 |
PCR primer forward |
orf1ab-F |
CAGACCTCGTCTATGCTTTAAGGC |
13814 - 13837 | ORF1ab |
CAGACCTCGTCTATGCTTTAAGGC |
17068-17091 | 33.33 |
20 |
64.88 |
39.4 |
14 |
CoV2ID085 |
PCR primer reverse |
orf1ab-R |
CCCTGGTCAAGGTTAATATAGGCA |
14165 - 14188 | ORF1ab |
TGCCTATATTAACCTTGACCAGGG |
17419-17442 | 33.33 |
100 |
62.1 |
65.14 |
14 |
CoV2ID086 |
PCR primer forward |
S-F |
CTTCCCTCAGTCAGCACCTC |
24715 - 24734 | S |
CTTCCCTCAGTCAGCACCTC |
31031-31050 | 25 |
40 |
55.24 |
40.08 |
14 |
CoV2ID087 |
PCR primer reverse |
S-R |
AACCAGTGTGTGCCATTTGA |
24815 - 24870 | S |
TCAAATGGCACACACTGGTT |
31193-31210 | 5.56 |
0 |
41.53 |
15.7 |
14 |
CoV2ID088 |
LAMP outer forward primer |
orf1ab-4F3 |
GGTATGATTTTGTAGAAAACCCA |
13925 - 13947 | ORF1ab |
GGTATGATTTTGTAGAAAACCCA |
17179-17201 | 52.17 |
20 |
75.98 |
49.38 |
14 |
CoV2ID089 |
LAMP outer backward primer |
orf1ab-4B3 |
CAACAGGAACTCCACTACC |
14122 - 14140 | ORF1ab |
GGTAGTGGAGTTCCTGTTG |
17376-17394 | 21.05 |
0 |
55.89 |
25.65 |
14 |
CoV2ID090 |
LAMP forward inner primer |
orf1ab-4FIP |
GGCATCACAGAATTGTACTGTTTTTGCGTATACGCCAACTTAGG |
13958 - 13976 | ORF1ab |
GCGTATACGCCAACTTAGG |
17255-17279 | 16 |
20 |
52.19 |
29.4 |
14 |
CoV2ID091 |
LAMP backward inner primer |
orf1ab-4BIP |
AATGCTGGTATTGTTGGTGTACTGAGGTTTGTATGAAATCACCGAA |
14095 - 14115 | ORF1ab |
TTCGGTGATTTCATACAAACC |
17286-17310 | 44 |
0 |
66.1 |
36.7 |
14 |
CoV2ID092 |
LAMP loop forward primer |
orf1ab-4LF |
AACAAAGCTTGGCGTACACGTTCA |
13977 - 14000 | ORF1ab |
TGAACGTGTACGCCAAGCTTTGTT |
17231-17254 | 20.83 |
40 |
51.79 |
37.54 |
14 |
CoV2ID093 |
LAMP outer forward primer |
S-123F3 |
TCTATTGCCATACCCACAA |
23693 - 23711 | S |
TCTATTGCCATACCCACAA |
29922-29937 | 37.5 |
20 |
60.71 |
39.4 |
14 |
CoV2ID094 |
LAMP outer backward primer |
S-123B3 |
GGTGTTTTGTAAATTTGTTTGAC |
23915 - 23937 | S |
GTCAAACAAATTTACAAAACACC |
30159-30181 | 4.35 |
20 |
40.99 |
21.78 |
14 |
CoV2ID095 |
LAMP forward inner primer |
S-123FIP |
CATTCAGTTGAATCACCACAAATGTGTGTTACCACAGAAATTCTACC |
23724 - 23745 | S |
GTGTTACCACAGAAATTCTACC |
30010-30034 | 28 |
40 |
55.43 |
41.14 |
14 |
CoV2ID096 |
LAMP backward inner primer |
S-123BIP |
GTTGCAATATGGCAGTTTTTGTACATTGGGTGTTTTTGTCTTGTT |
23880 - 23899 | S |
AACAAGACAAAAACACCCAA |
30047-30071 | 28 |
0 |
58.86 |
28.95 |
14 |
CoV2ID097 |
LAMP loop forward primer |
S-123LF |
ACTGATGTCTTGGTCATAGACACT |
23746 - 23769 | S |
AGTGTCTATGACCAAGACATCAGT |
29972-29995 | 4.17 |
20 |
46.63 |
23.6 |
14 |
CoV2ID098 |
LAMP loop backward primer |
S-123LB |
TAAACCGTGCTTTAACTGGAATAGC |
23850 - 23874 | S |
TAAACCGTGCTTTAACTGGAATAGC |
30098-30118 | 9.52 |
20 |
48.98 |
26.17 |
14 |
CoV2ID099 |
PCR primer forward |
Chan_S_gene_F |
CCTACTAAATTAAATGATCTCTGCTTTACT |
22712 - 22741 | S |
CCTACTAAATTAAATGATCTCTGCTTTACT |
28400-28429 | 10 |
0 |
50.63 |
20.21 |
15 |
CoV2ID100 |
PCR primer reverse |
Chan_S_gene_R |
CAAGCTATAACGCAGCCTGTA |
22849 - 22869 | S |
TACAGGCTGCGTTATAGCTTG |
28538-28558 | 9.52 |
0 |
45.8 |
18.44 |
15 |
CoV2ID101 |
PCR primer forward |
Chan_RdRp_gene_F |
CAAGTGGGGTAAGGCTAGACTTT |
14965 - 14983 | ORF1ab |
TGGGGTAAGGCTAGACTTT |
18222-18240 | 52.63 |
40 |
72.93 |
55.19 |
15 |
CoV2ID102 |
PCR primer reverse |
Chan_RdRp_gene_R |
ACTTAGGATAATCCCAACCCAT |
15283 - 15302 | ORF1ab |
ATGGGTTGGGATTATCCTAA |
18540-18559 | 80 |
100 |
94.29 |
91.43 |
15 |
CoV2ID103 |
PCR primer forward |
Caly_BetaCoV_RdRp_F |
AAATTCTATGGTGGTTGGCACAACATGTT |
15217 - 15245 | ORF1ab |
AAATTCTATGGTGGTTGGCACAACATGTT |
18474-18502 | 65.52 |
80 |
83.25 |
76.26 |
16 |
CoV2ID104 |
PCR primer reverse |
Caly_BetaCoV_RdRp_R |
TAGGCATAGCTCTRTCACAYTT |
15301 - 15322 | ORF1ab |
AAATGTGATAGAGCCATGCCTA |
18558-18579 | 63.64 |
80 |
83.98 |
75.87 |
16 |
CoV2ID105 |
Probe |
Caly_BetaCoV_RdRp_P |
TGGGTTGGGATTATC |
15284 - 15298 | ORF1ab |
TGGGTTGGGATTATC |
18541-18555 | 80 |
60 |
94.29 |
78.1 |
16 |
CoV2ID106 |
PCR primer forward |
Huang_E_gene_F |
ACTTCTTTTTCTTGCTTTCGTGGT |
26295 - 26318 | E |
ACTTCTTTTTCTTGCTTTCGTGGT |
33957-33980 | 8.33 |
20 |
44.05 |
24.13 |
17 |
CoV2ID107 |
PCR primer reverse |
Huang_E_gene_R |
GCAGCAGTACGCACACAATC |
26357 - 26376 | E |
GATTGTGTGCGTACTGCTGC |
34019-34038 | 20 |
20 |
51.67 |
30.56 |
17 |
CoV2ID108 |
Probe |
Huang_E_gene_P |
CTAGTTACACTAGCCATCCTTACTGC |
26326 - 26351 | E |
CTAGTTACACTAGCCATCCTTACTGC |
33988-34013 | 23.08 |
0 |
50.73 |
24.6 |
17 |
CoV2ID109 |
PCR primer forward |
Lu_orf1ab_F |
AGAAGATTGGTTAGATGATGATAGT |
3193 - 3217 | ORF1ab |
AGAAGATTGGTTAGATGATGATAGT |
4979-4993 | 0 |
0 |
32.38 |
10.79 |
18 |
CoV2ID110 |
PCR primer reverse |
Lu_orf1ab_R |
TTCCATCTCTAATTGAGGTTGAACC |
3286 - 3310 | ORF1ab |
GGTTCAACCTCAATTAGAGATGGAA |
5087-5101 | 6.67 |
0 |
42.86 |
16.51 |
18 |
CoV2ID111 |
Probe |
Lu_orf1ab_P |
TCCTCACTGCCGTCTTGTTGACCA |
3229 - 3252 | ORF1ab |
TGGTCAACAAGACGGCAGTGAGGA |
5005-5028 | 0 |
0 |
41.07 |
13.69 |
18 |
CoV2ID112 |
LAMP outer forward primer |
F3 2019-nCoV N1-gene |
TGGACCCCAAAATCAGCG |
28285 - 28302 | N |
TGGACCCCAAAATCAGCG |
36043-36060 | 0 |
0 |
52.38 |
17.46 |
19 |
CoV2ID113 |
LAMP outer backward primer |
B3 2019-nCoV N1-gene |
GCCTTGTCCTCGAGGGAAT |
28468 - 28486 | N |
ATTCCCTCGAGGACAAGGC |
36226-36244 | 0 |
0 |
52.38 |
17.46 |
19 |
CoV2ID114 |
LAMP forward inner primer |
FIP 2019-nCoV N1-gene |
CCACTGCGTTCTCCATTCTGGTAAATGCACCCCGCATTACG |
28303 - 28321 | N |
AATGCACCCCGCATTACG |
36111-36132 | 9.09 |
0 |
51.3 |
20.13 |
19 |
CoV2ID115 |
LAMP backward inner primer |
BIP 2019-nCoV N1-gene |
CGCGATCAAAACAACGTCGGCCCTTGCCATGTTGAGTGAGA |
28438 - 28457 | N |
TCTCACTCAACATGGCAAGG |
36135-36157 | 4.35 |
0 |
45.13 |
16.49 |
19 |
CoV2ID116 |
LAMP loop forward primer |
LF 2019-nCoV N1-gene |
TGAATCTGAGGGTCCACCAAA |
28322 - 28342 | N |
TTTGGTGGACCCTCAGATTCA |
36080-36100 | 9.52 |
0 |
45.8 |
18.44 |
19 |
CoV2ID117 |
LAMP loop backward primer |
LB 2019-nCoV N1-gene |
GGTTTACCCAATAATACTGCGTCTT |
28403 - 28427 | N |
GGTTTACCCAATAATACTGCGTCTT |
36161-36185 | 4 |
20 |
50.48 |
24.83 |
19 |
CoV2ID118 |
LAMP outer forward primer |
F3 2019-nCoV N15-gene |
AGATCACATTGGCACCCG |
28702 - 28719 | N |
AGATCACATTGGCACCCG |
36460-36477 | 0 |
0 |
39.15 |
13.05 |
19 |
CoV2ID119 |
LAMP outer backward primer |
B3 2019-nCoV N15-gene |
CCATTGCCAGCCATTCTAGC |
28895 - 28914 | N |
GCTAGAATGGCTGGCAATGG |
36674-36693 | 0 |
0 |
33.1 |
11.03 |
19 |
CoV2ID120 |
LAMP forward inner primer |
FIP 2019-nCoV N15-gene |
TGCTCCCTTCTGCGTAGAAGCCAATGCTGCAATCGTGCTAC |
28732 - 28751 | N |
CAATGCTGCAATCGTGCTAC |
36539-36560 | 0 |
0 |
52.38 |
17.46 |
19 |
CoV2ID121 |
LAMP backward inner primer |
BIP 2019-nCoV N15-gene |
GGCGGCAGTCAAGCCTCTTCCCTACTGCTGCCTGGAGTT |
28864 - 28883 | N |
AACTCCAGGCAGCAGTAGGG |
36563-36582 | 15 |
0 |
50.95 |
21.98 |
19 |
CoV2ID122 |
LAMP loop forward primer |
LF 2019-nCoV N15-gene |
GCAATGTTGTTCCTTGAGGAAGTT |
28752 - 28775 | N |
AACTTCCTCAAGGAACAACATTGC |
36510-36533 | 0 |
0 |
50 |
16.67 |
19 |
CoV2ID123 |
LAMP loop backward primer |
LB 2019-nCoV N15-gene |
GTTCCTCATCACGTAGTCGCAACA |
28827 - 28850 | N |
GTTCCTCATCACGTAGTCGCAACA |
36617-36629 | 15.38 |
20 |
52.38 |
29.25 |
19 |
CoV2ID124 |
LAMP outer forward primer |
F3 2019-nCoV S17-gene |
TCTTTCACACGTGGTGTT |
21653 - 21670 | S |
TCTTTCACACGTGGTGTT |
25936-25948 | 0 |
0 |
28.57 |
9.52 |
19 |
CoV2ID125 |
LAMP outer backward primer |
B3 2019-nCoV S17-gene |
GTACCAAAAATCCAGCCTC |
21867 - 21885 | S |
GAGGCTGGATTTTTGGTAC |
5862-5876 | 60 |
40 |
81.59 |
60.53 |
19 |
CoV2ID126 |
LAMP forward inner primer |
FIP 2019-nCoV S17-gene |
CATGGAACCAAGTAACATTGGAAAACCTGACAAAGTTTTCAGATCC |
21677 - 21697 | S |
CCTGACAAAGTTTTCAGATCC |
26082-26104 | 0 |
0 |
39.75 |
13.25 |
19 |
CoV2ID127 |
LAMP backward inner primer |
BIP 2019-nCoV S17-gene |
CTCTGGGACCAATGGTACTAAGAGGACTTCTCAGTGGAAGCA |
21838 - 21855 | S |
TGCTTCCACTGAGAAGTC |
26382-26399 | 0 |
0 |
29.37 |
9.79 |
19 |
CoV2ID128 |
LAMP loop forward primer |
LF 2019-nCoV S17-gene |
GAAAGGTAAGAACAAGTCCTGAGT |
21713 - 21736 | S |
ACTCAGGACTTGTTCTTACCTTTC |
26031-26056 | 0 |
0 |
29.85 |
9.95 |
19 |
CoV2ID129 |
LAMP loop backward primer |
LB 2019-nCoV S17-gene |
CTGTCCTACCATTTAATGATGGTGT |
21807 - 21831 | S |
CTGTCCTACCATTTAATGATGGTGT |
26351-26375 | 0 |
0 |
34.1 |
11.37 |
19 |
CoV2ID130 |
LAMP outer forward primer |
F3 2019-nCoV O117-gene |
CCCCAAAATGCTGTTGTT |
1346 - 1363 | ORF1ab |
CCCCAAAATGCTGTTGTT |
2241-2258 | 0 |
0 |
32.28 |
10.76 |
19 |
CoV2ID131 |
LAMP outer backward primer |
B3 2019-nCoV O117-gene |
TAGCACGTGGAACCCAAT |
1530 - 1547 | ORF1ab |
ATTGGGTTCCACGTGCTA |
2521-2533 | 0 |
0 |
37 |
12.33 |
19 |
CoV2ID132 |
LAMP forward inner primer |
FIP 2019-nCoV O117-gene |
GGTTTTCAAGCCAGATTCATTATGGATGTCACAATTCAGAAGTAGGA |
1381 - 1402 | ORF1ab |
TGTCACAATTCAGAAGTAGGA |
2276-2295 | 0 |
0 |
30.24 |
10.08 |
19 |
CoV2ID133 |
LAMP backward inner primer |
BIP 2019-nCoV O117-gene |
TCTTCGTAAGGGTGGTCGCAGCACACTTGTTATGGCAAC |
1509 - 1527 | ORF1ab |
GTTGCCATAACAAGTGTGC |
2409-2428 | 10 |
20 |
47.62 |
25.87 |
19 |
CoV2ID134 |
LAMP loop forward primer |
LF 2019-nCoV O117-gene |
TCGGCAAGACTATGCTCAGG |
1403 - 1422 | ORF1ab |
CCTGAGCATAGTCTTGCCGA |
2352-2367 | 6.25 |
0 |
51.49 |
19.25 |
19 |
CoV2ID135 |
LAMP loop backward primer |
LB 2019-nCoV O117-gene |
TTGCCTTTGGAGGCTGTGT |
1476 - 1494 | ORF1ab |
TTGCCTTTGGAGGCTGTGT |
2432-2450 | 10.53 |
20 |
43.86 |
24.8 |
19 |
CoV2ID136 |
LAMP outer forward primer |
F3 2019-nCoV orf1ab-gene |
AAACGTAATGTCATCCCTACT |
15034 - 15054 | ORF1ab |
AAACGTAATGTCATCCCTACT |
18291-18311 | 61.9 |
60 |
80.73 |
67.54 |
20 |
CoV2ID137 |
LAMP outer backward primer |
B3 2019-nCoV orf1ab-gene |
ACTGTTTATAGTGATGTAGAAAACC |
15250 - 15274 | ORF1ab |
ACTGTTTATAGTGATGTAGAAAACC |
18507-18531 | 36 |
20 |
61.71 |
39.24 |
20 |
CoV2ID138 |
LAMP forward inner primer |
FIP 2019-nCoV orf1ab-gene |
ACAGATAGAGACACCAGCTACGGCTCAAATGAATCTTAAGTATGCCA |
15059 - 15082 | ORF1ab |
CTCAAATGAATCTTAAGTATGCCA |
18316-18339 | 66.67 |
80 |
83.93 |
76.87 |
20 |
CoV2ID139 |
LAMP backward inner primer |
BIP 2019-nCoV orf1ab-gene |
ATAGCCGCCACTAAGAGGAGCCCAACCACCATAGAATTTGC |
15215 - 15234 | ORF1ab |
CAAATTCTATGGTGGTTGG |
18472-18491 | 70 |
40 |
85.24 |
65.08 |
20 |
CoV2ID140 |
LAMP loop backward primer |
LF 2019-nCoV orf1ab-gene |
TTAGTGCAAAGAATAGAGCTCGCA |
15083 - 15106 | N |
TTAGTGCAAAGAATAGAGCTCGCA |
18340-18363 | 45.83 |
40 |
76.79 |
54.21 |
21 |
CoV2ID141 |
LAMP outer forward primer |
F3 2019-nCoV N-gene |
GCCAAAAGGCTTCTACGCA |
28774 - 28792 | N |
GCCAAAAGGCTTCTACGCA |
36532-36550 | 0 |
0 |
52.38 |
17.46 |
21 |
CoV2ID142 |
LAMP outer backward primer |
B3 2019-nCoV N-gene |
TTGCTCTCAAGCTGGTTCAA |
28952 - 28971 | N |
TTGAACCAGCTTGAGAGCAA |
36740-36759 | 10 |
20 |
45 |
25 |
21 |
CoV2ID143 |
LAMP forward inner primer |
FIP 2019-nCoV N-gene |
TCCCCTACTGCTGCCTGGAGCAGTCAAGCCTCTTCTCGTT |
28809 - 28829 | N |
GCAGTCAAGCCTCTTCTCGTT |
36567-36587 | 19.05 |
20 |
55.33 |
31.46 |
21 |
CoV2ID144 |
LAMP backward inner primer |
BIP 2019-nCoV N-gene |
TCTCCTGCTAGAATGGCTGGCATCTGTCAAGCAGCAGCAAAG |
28932 - 28952 | N |
CTTTGCTGCTGCTTGACAGAT |
36668-36689 | 0 |
0 |
39.39 |
13.13 |
21 |
CoV2ID145 |
LAMP loop backward primer |
LB 2019-nCoV N-gene |
TGGCGGTGATGCTGCTCTT |
28912 - 28930 | N |
TGGCGGTGATGCTGCTCTT |
36691-36709 | 5.26 |
0 |
43.36 |
16.21 |
21 |
CoV2ID146 |
LAMP outer forward primer |
GeneN-A-F3 |
TGGCTACTACCGAAGAGCT |
28525 - 28543 | N |
TGGCTACTACCGAAGAGCT |
36283-36301 | 10.53 |
20 |
47.87 |
26.13 |
22 |
CoV2ID147 |
LAMP outer backward primer |
GeneN-A-B3 |
TGCAGCATTGTTAGCAGGAT |
28722 - 28741 | N |
ATCCTGCTAACAATGCTGCA |
36480-36499 | 0 |
0 |
47.38 |
15.79 |
22 |
CoV2ID148 |
LAMP loop forward primer |
GeneN-A-LF |
GGACTGAGATCTTTCATTTTACCGT |
28566 - 28590 | N |
ACGGTAAAATGAAAGATCTCAGTCC |
36324-36348 | 0 |
0 |
52.38 |
17.46 |
22 |
CoV2ID149 |
LAMP loop backward primer |
GeneN-A-LB |
ACTGAGGGAGCCTTGAATACA |
28676 - 28696 | N |
ACTGAGGGAGCCTTGAATACA |
36434-36454 | 0 |
0 |
51.02 |
17.01 |
22 |
CoV2ID150 |
LAMP forward inner primer |
GeneN-A-FIP |
TCTGGCCCAGTTCCTAGGTAGTCCAGACGAATTCGTGGTGG |
28545 - 28563 | N |
CCAGACGAATTCGTGGTGG |
36363-36384 | 4.55 |
0 |
49.78 |
18.11 |
22 |
CoV2ID151 |
LAMP backward inner primer |
GeneN-A-BIP |
AGACGGCATCATATGGGTTGCACGGGTGCCAATGTGATCT |
28702 - 28719 | N |
AGATCACATTGGCACCCG |
36412-36433 | 0 |
0 |
52.38 |
17.46 |
22 |
CoV2ID152 |
LAMP loop forward primer |
2019-nCoV N-gene_LF |
CGACTACGTGATGAGGAACGA |
28825 - 28845 | N |
TCGTTCCTCATCACGTAGTCG |
36583-36595 | 7.69 |
0 |
52.38 |
20.02 |
23 |
CoV2ID153 |
LAMP loop backward primer |
2019-nCoV N-gene_LB |
AATGGCGGTGATGCTGCTCTT |
28910 - 28930 | N |
AATGGCGGTGATGCTGCTCTT |
36689-36709 | 4.76 |
0 |
42.4 |
15.72 |
23 |
CoV2ID154 |
LAMP outer forward primer |
F3 2019-nCoV orf-gene |
TGCTTCAGTCAGCTGATG |
13434 - 13451 | ORF1ab |
TGCTTCAGTCAGCTGATG |
16671-16688 | 0 |
0 |
45.24 |
15.08 |
23 |
CoV2ID155 |
LAMP outer backward primer |
B3 2019-nCoV orf-gene |
TTAAATTGTCATCTTCGTCCTT |
13615 - 13636 | ORF1ab |
AAGGACGAAGATGACAATTTAA |
16865-16886 | 22.73 |
0 |
47.19 |
23.31 |
23 |
CoV2ID156 |
LAMP forward inner primer |
FIP 2019-nCoV orf-gene |
TCAGTACTAGTGCCTGTGCCCACAATCGTTTTTAAACGGGT |
13452 - 13472 | ORF1ab |
CACAATCGTTTTTAAACGGGT |
16751-16770 | 10 |
0 |
51.19 |
20.4 |
23 |
CoV2ID157 |
LAMP backward inner primer |
BIP 2019-nCoV orf-gene |
TCGTATACAGGGCTTTTGACATCTATCTTGGAAGCGACAACAA |
13596 - 13613 | ORF1ab |
TTGTTGTCGCTTCCAAGA |
16773-16797 | 44 |
20 |
66.67 |
43.56 |
23 |
CoV2ID158 |
LAMP loop forward primer |
LF 2019-nCoV orf-gene |
CTGCACTTACACCGCAA |
13473 - 13489 | ORF1ab |
TTGCGGTGTAAGTGCAG |
16711-16726 | 37.5 |
40 |
66.07 |
47.86 |
23 |
CoV2ID159 |
LAMP loop backward primer |
LB 2019-nCoV orf-gene |
GTAGCTGGTTTTGCTAAATTCC |
13564 - 13585 | ORF1ab |
GTAGCTGGTTTTGCTAAATTCC |
16814-16835 | 13.64 |
20 |
56.71 |
30.12 |
23 |
CoV2ID160 |
LAMP outer forward primer |
As1_ORF1ab_F3 |
GGTGGACAAATTGTCAC |
2246 - 2262 | ORF1ab |
GGTGGACAAATTGTCAC |
3577-3593 | 5.88 |
0 |
48.74 |
18.21 |
24 |
CoV2ID161 |
LAMP outer backward primer |
As1_ORF1ab_B3 |
CTTCTCTGGATTTAACACACTT |
2420 - 2441 | ORF1ab |
AAGTGTGTTAAATCCAGAGAAG |
3751-3772 | 0 |
0 |
29.44 |
9.81 |
24 |
CoV2ID162 |
LAMP loop forward primer |
As1_ORF1ab_LF |
TTACAAGCTTAAAGAATGTCTGAACACT |
2285 - 2312 | ORF1ab |
AGTGTTCAGACATTCTTTAAGCTTGTAA |
3616-3643 | 0 |
0 |
38.44 |
12.81 |
24 |
CoV2ID163 |
LAMP loop backward primer |
As1_ORF1ab_LB |
TTGAATTTAGGTGAAACATTTGTCACG |
2372 - 2398 | ORF1ab |
TTGAATTTAGGTGAAACATTTGTCACG |
3703-3729 | 0 |
0 |
43.74 |
14.58 |
24 |
CoV2ID164 |
LAMP forward inner primer |
As1_ORF1ab_FIP |
TCAGCACACAAAGCCAAAAATTTATCTGTGCAAAGGAAATTAAGGAG |
2263 - 2284 | ORF1ab |
CTGTGCAAAGGAAATTAAGGAG |
3644-3668 | 0 |
0 |
28.19 |
9.4 |
24 |
CoV2ID165 |
LAMP backward inner primer |
As1_ORF1ab_BIP |
TATTGGTGGAGCTAAACTTAAAGCCCTGTACAATCCCTTTGAGTG |
2399 - 2418 | ORF1ab |
CACTCAAAGGGATTGTACAG |
3678-3702 | 12 |
0 |
43.81 |
18.6 |
24 |
CoV2ID166 |
LAMP forward inner primer |
As1e_ORF1ab_FIP |
TCAGCACACAAAGCCAAAAATTTATTTTTCTGTGCAAAGGAAATTAAGGAG |
2263 - 2284 | ORF1ab |
CTGTGCAAAGGAAATTAAGGAG |
3642-3668 | 0 |
0 |
28.22 |
9.41 |
24 |
CoV2ID167 |
LAMP backward inner primer |
As1e_ORF1ab_BIP |
TATTGGTGGAGCTAAACTTAAAGCCTTTTCTGTACAATCCCTTTGAGTG |
2399 - 2421 | ORF1ab |
CACTCAAAGGGATTGTACAGAAA |
3678-3704 | 11.11 |
0 |
44.27 |
18.46 |
24 |
CoV2ID168 |
RPA forward primer |
Metsky_orf1ab_F |
gaaatTAATACGACTCACTATAgggCCAAGGTAAACCTTTGGAATTTGGTGCCAC |
3130 - 3159 | ORF1ab |
CCAAGGTAAACCTTTGGAATTTGGTGCCAC |
4783-4804 | 0 |
0 |
32.68 |
10.89 |
25 |
CoV2ID169 |
RPA reverse primer |
Metsky_orf1ab_R |
ACTATCATCATCTAACCAATCTTCTTCTTG |
3188 - 3217 | ORF1ab |
CAAGAAGAAGATTGGTTAGATGATGATAGT |
4979-4993 | 0 |
0 |
32.38 |
10.79 |
25 |
CoV2ID170 |
RPA forward primer |
orf1ab_F |
TAATACGACTCACTATAGGGACATAAACAAGCTTTGTGAAGAAATGCTGGAC |
12041 - 12073 | ORF1ab |
GACATAAACAAGCTTTGTGAAGAAATGCTGGAC |
15256-15287 | 9.38 |
20 |
50.89 |
26.76 |
26 |
CoV2ID171 |
RPA reverse primer |
orf1ab_R |
TTGAGCAGTAGCAAAAGCTGCATATGATGGAAGG |
12115 - 12148 | ORF1ab |
CCTTCCATCATATGCAGCTTTTGCTACTGCTCAA |
15329-15362 | 23.53 |
20 |
58.26 |
33.93 |
26 |
CoV2ID172 |
gRNA |
gRNA_ORF1ab |
GGGGAUUUAGACUACCCCAAAAACGAAGGGGACUAAAACAAACUCUGAGGCUAUAGCUUGUAAGGUU |
12082 - 12109 | ORF1ab |
AACCTTACAAGCTATAGCCTCAGAGTTT |
15296-15323 | 25 |
60 |
56.12 |
47.04 |
26 |
CoV2ID173 |
LAMP outer forward primer |
nCoV-N-F3 |
CCAGAATGGAGAACGCAGTG |
28354 - 28373 | N |
CCAGAATGGAGAACGCAGTG |
36112-36131 | 10 |
0 |
50.24 |
20.08 |
27 |
CoV2ID174 |
LAMP outer backward primer |
nCoV-N-B3 |
CCGTCACCACCACGAATT |
28552 - 28569 | N |
AATTCGTGGTGGTGACGG |
36310-36327 | 0 |
0 |
52.38 |
17.46 |
27 |
CoV2ID175 |
LAMP forward inner primer |
nCoV-N-FIP |
AGCGGTGAACCAAGACGCAGGGCGCGATCAAAACAACG |
28374 - 28392 | N |
GGGCGCGATCAAAACAACG |
36177-36196 | 0 |
0 |
52.38 |
17.46 |
27 |
CoV2ID176 |
LAMP backward inner primer |
nCoV-N-BIP |
AATTCCCTCGAGGACAAGGCGAGCTCTTCGGTAGTAGCCAA |
28524 - 28543 | N |
TTGGCTACTACCGAAGAGCT |
36225-36245 | 0 |
0 |
52.38 |
17.46 |
27 |
CoV2ID177 |
LAMP loop forward primer |
nCoV-N-LF |
TTATTGGGTAAACCTTGGGGC |
28396 - 28416 | N |
GCCCCAAGGTTTACCCAATAA |
36154-36174 | 9.52 |
0 |
48.3 |
19.27 |
27 |
CoV2ID178 |
LAMP loop backward primer |
nCoV-N-LB |
TTCCAATTAACACCAATAGCAGTCC |
28488 - 28512 | N |
TTCCAATTAACACCAATAGCAGTCC |
36246-36270 | 0 |
0 |
52.38 |
17.46 |
27 |
CoV2ID179 |
LAMP outer backward primer |
Baek_nCoV N-B3 |
AGCCAATTTGGTCATCTGGA |
28510 - 28529 | N |
TCCAGATGACCAAATTGGCT |
36268-36287 | 0 |
0 |
41.43 |
13.81 |
28 |
CoV2ID180 |
LAMP forward inner primer |
Baek_nCoV N-FIP |
CGTTGTTTTGATCGCGCCCCATTACGTTTGGTGGACCCTC |
28315 - 28335 | N |
CATTACGTTTGGTGGACCCTC |
36073-36093 | 9.52 |
20 |
49.66 |
26.39 |
28 |
CoV2ID181 |
LAMP backward inner primer |
Baek_nCoV N-BIP |
ATACTGCGTCTTGGTTCACCGCATTGGAACGCCTTGTCCTC |
28476 - 28494 | N |
GAGGACAAGGCGTTCCAAT |
36174-36195 | 0 |
0 |
52.38 |
17.46 |
28 |
CoV2ID182 |
LAMP loop forward primer |
Baek_nCoV N-LF |
TGCGTTCTCCATTCTGGTTACT |
28349 - 28370 | N |
AGTAACCAGAATGGAGAACGCA |
36107-36128 | 13.64 |
0 |
51.3 |
21.65 |
28 |
CoV2ID183 |
LAMP loop backward primer |
Baek_nCoV N-LB |
TCTCACTCAACATGGCAAGGAA |
28438 - 28459 | N |
TCTCACTCAACATGGCAAGGAA |
36196-36217 | 0 |
0 |
52.38 |
17.46 |
28 |
CoV2ID184 |
LAMP outer forward primer |
Nsp3_1-61_F3 |
GGAATTTGGTGCCACTTC |
3145 - 3162 | ORF1ab |
GGAATTTGGTGCCACTTC |
4790-4807 | 0 |
0 |
34.66 |
11.55 |
29 |
CoV2ID185 |
LAMP outer backward primer |
Nsp3_1-61_B3 |
CTATTCACTTCAATAGTCTGAACA |
3322 - 3345 | ORF1ab |
TGTTCAGACTATTGAAGTGAATAG |
5153-5167 | 20 |
20 |
55.24 |
31.75 |
29 |
CoV2ID186 |
LAMP forward inner primer |
Nsp3_1-61_FIP |
CTTGTTGACCAACAGTTTGTTGACTTCAACCTGAAGAAGAGCAA |
3170 - 3190 | ORF1ab |
CTTCAACCTGAAGAAGAGCAA |
4991-5015 | 0 |
0 |
40.19 |
13.4 |
29 |
CoV2ID187 |
LAMP backward inner primer |
Nsp3_1-61_BIP |
CGGCAGTGAGGACAATCAGACACTGGTGTAAGTTCCATCTC |
3302 - 3321 | ORF1ab |
GAGATGGAACTTACACCAGT |
5017-5038 | 0 |
0 |
32.9 |
10.97 |
29 |
CoV2ID188 |
LAMP loop forward primer |
Nsp3_1-61_LF |
ATCATCATCTAACCAATCTTCTTC |
3191 - 3214 | ORF1ab |
GAAGAAGATTGGTTAGATGATGAT |
4945-4956 | 8.33 |
20 |
50.4 |
26.24 |
29 |
CoV2ID189 |
LAMP loop backward primer |
Nsp3_1-61_LB |
TCAAACAATTGTTGAGGTTCAACC |
3271 - 3294 | ORF1ab |
TCAAACAATTGTTGAGGTTCAACC |
5047-5070 | 4.17 |
0 |
42.86 |
15.68 |
29 |
CoV2ID190 |
LAMP outer forward primer |
Nsp3_2-24_F3 |
TGCAACTAATAAAGCCACG |
6253 - 6271 | ORF1ab |
TGCAACTAATAAAGCCACG |
8750-8764 | 13.33 |
40 |
51.43 |
34.92 |
29 |
CoV2ID191 |
LAMP outer backward primer |
Nsp3_2-24_B3 |
CGTCTTTCTGTATGGTAGGATT |
6425 - 6446 | ORF1ab |
AATCCTACCATACAGAAAGACG |
8973-8984 | 0 |
0 |
27.38 |
9.13 |
29 |
CoV2ID192 |
LAMP forward inner primer |
Nsp3_2-24_FIP |
TCTGACTTCAGTACATCAAACGAATAAATACCTGGTGTATACGTTGTC |
6280 - 6302 | ORF1ab |
AAATACCTGGTGTATACGTTGTC |
8881-8905 | 0 |
0 |
38.86 |
12.95 |
29 |
CoV2ID193 |
LAMP backward inner primer |
Nsp3_2-24_BIP |
GACGCGCAGGGAATGGATAATTCCACTACTTCTTCAGAGACT |
6403 - 6424 | ORF1ab |
AGTCTCTGAAGAAGTAGTGGAA |
8951-8972 | 0 |
0 |
27.06 |
9.02 |
29 |
CoV2ID194 |
LAMP loop forward primer |
Nsp3_2-24_LF |
TGTTTCAACTGGTTTTGTGCTCCA |
6305 - 6328 | ORF1ab |
TGGAGCACAAAACCAGTTGAAACA |
8860-8876 | 0 |
0 |
36.41 |
12.14 |
29 |
CoV2ID195 |
LAMP loop backward primer |
Nsp3_2-24_LB |
TCTTGCCTGCGAAGATCTAAAAC |
6379 - 6401 | ORF1ab |
TCTTGCCTGCGAAGATCTAAAAC |
8927-8949 | 0 |
0 |
25.47 |
8.49 |
29 |
CoV2ID196 |
LAMP outer forward primer |
S_1-2-2_F3 |
CTGACAAAGTTTTCAGATCCTCAG |
21678 - 21701 | S |
CTGACAAAGTTTTCAGATCCTCAG |
25967-25978 | 0 |
0 |
33.33 |
11.11 |
29 |
CoV2ID197 |
LAMP outer backward primer |
S_1-2-2_B3 |
AGTACCAAAAATCCAGCCTCTT |
21865 - 21886 | S |
AAGAGGCTGGATTTTTGGTACT |
26418-26429 | 0 |
0 |
32.54 |
10.85 |
29 |
CoV2ID198 |
LAMP forward inner primer |
S_1-2-2_FIP |
TCCCAGAGACATGTATAGCATGGAATCAACTCAGGACTTGTTCTTACC |
21710 - 21732 | S |
TCAACTCAGGACTTGTTCTTACC |
26028-26046 | 0 |
0 |
31.58 |
10.53 |
29 |
CoV2ID199 |
LAMP backward inner primer |
S_1-2-2_BIP |
TGGTACTAAGAGGTTTGATAACCCTGTTAGACTTCTCAGTGGAAGCA |
21838 - 21860 | S |
TGCTTCCACTGAGAAGTCTAACA |
26382-26404 | 0 |
0 |
27.74 |
9.25 |
29 |
CoV2ID200 |
LAMP loop forward primer |
S_1-2-2_LF |
CCAAGTAACATTGGAAAAGAAA |
21733 - 21754 | S |
TTTCTTTTCCAATGTTACTTGG |
26082-26097 | 0 |
0 |
38.39 |
12.8 |
29 |
CoV2ID201 |
LAMP loop backward primer |
S_1-2-2_LB |
GTCCTACCATTTAATGATGGTGTTT |
21809 - 21833 | S |
GTCCTACCATTTAATGATGGTGTTT |
26353-26377 | 0 |
0 |
34.29 |
11.43 |
29 |
CoV2ID202 |
LAMP forward inner primer |
N_21_FIP |
TCCCCTACTGCTGCCTGGAGGCAGTCAAGCCTCTTCTCG |
28808 - 28827 | N |
GGCAGTCAAGCCTCTTCTCG |
36566-36585 | 20 |
60 |
55.24 |
45.08 |
29 |
CoV2ID203 |
LAMP loop forward primer |
N_21_LF |
TGTTGCGACTACGTGATGAGGA |
28829 - 28850 | N |
TCCTCATCACGTAGTCGCAACA |
36617-36629 | 15.38 |
0 |
52.38 |
22.59 |
29 |
CoV2ID204 |
LAMP loop backward primer |
N_21_LB |
ATGGCGGTGATGCTGCTCT |
28911 - 28929 | N |
ATGGCGGTGATGCTGCTCT |
36690-36708 | 5.26 |
0 |
41.85 |
15.7 |
29 |
CoV2ID205 |
LAMP outer forward primer |
NB-F3 |
ACCGAAGAGCTACCAGACG |
28533 - 28551 | N |
ACCGAAGAGCTACCAGACG |
36291-36309 | 10.53 |
0 |
56.14 |
22.22 |
30 |
CoV2ID206 |
LAMP forward inner primer |
NB-FIP |
TCTGGCCCAGTTCCTAGGTAGTTCGTGGTGGTGACGGTAA |
28554 - 28572 | N |
TTCGTGGTGGTGACGGTAA |
36363-36384 | 4.55 |
0 |
49.78 |
18.11 |
30 |
CoV2ID207 |
LAMP loop forward primer |
NB-LF |
CCATCTTGGACTGAGATCTTTCATT |
28573 - 28597 | N |
AATGAAAGATCTCAGTCCAAGATGG |
36331-36355 | 0 |
0 |
50.1 |
16.7 |
30 |
CoV2ID208 |
LAMP outer forward primer |
Lamb-F3 |
TCCAGATGAGGATGAAGAAGA |
3043 - 3063 | ORF1ab |
TCCAGATGAGGATGAAGAAGA |
4431-4451 | 0 |
0 |
39.46 |
13.15 |
30 |
CoV2ID209 |
LAMP outer backward primer |
Lamb-B3 |
AGTCTGAACAACTGGTGTAAG |
3311 - 3331 | ORF1ab |
CTTACACCAGTTGTTCAGACT |
5146-5162 | 11.76 |
0 |
47.06 |
19.61 |
30 |
CoV2ID210 |
LAMP forward inner primer |
Lamb-FIP |
AGAGCAGCAGAAGTGGCACAGGTGATTGTGAAGAAGAAGAG |
3064 - 3085 | ORF1ab |
AGGTGATTGTGAAGAAGAAGAG |
4798-4816 | 0 |
0 |
30.08 |
10.03 |
30 |
CoV2ID211 |
LAMP backward inner primer |
Lamb-BIP |
TCAACCTGAAGAAGAGCAAGAACTGATTGTCCTCACTGCC |
3242 - 3259 | ORF1ab |
GGCAGTGAGGACAATCAG |
5018-5035 | 0 |
0 |
31.48 |
10.49 |
30 |
CoV2ID212 |
LAMP loop forward primer |
Lamb-LF |
CTCATATTGAGTTGATGGCTCA |
3088 - 3109 | ORF1ab |
TGAGCCATCAACTCAATATGAG |
4643-4664 | 13.64 |
0 |
48.48 |
20.71 |
30 |
CoV2ID213 |
LAMP loop backward primer |
Lamb-LB |
ACAAACTGTTGGTCAACAAGAC |
3220 - 3241 | ORF1ab |
ACAAACTGTTGGTCAACAAGAC |
4996-5017 | 0 |
0 |
43.29 |
14.43 |
30 |
CoV2ID214 |
PCR primer forward |
PCR-C-fwd primer |
ACACTCTTTCCCTACACGACGCTCTTCCGATCTAACGCTGAAGCGCTGGGGGCAAA |
29192 - 29214 | N |
TTTGCCCCCAGCGCTTCAGCGTT |
37060-37082 | 26.09 |
60 |
58.18 |
48.09 |
31 |
CoV2ID215 |
PCR primer reverse |
PCR-C-rev primer |
TGACTGGAGTTCAGACGTGTGCTCTTCCGATCTGTTTGTAATCAGTTCCTTGTCTG |
29149 - 29172 | N |
CAGACAAGGAACTGATTACAAACA |
37017-37040 | 12.5 |
0 |
52.58 |
21.69 |
31 |
CoV2ID216 |
LAMP outer backward primer |
Wang_N_B3 |
TTTGGCCTTGTTGTTGTTGG |
28987 - 29006 | N |
CCAACAACAACAAGGCCAAA |
36775-36788 | 0 |
0 |
30.61 |
10.2 |
32 |
CoV2ID217 |
LAMP forward inner primer |
Wang_N_FIP |
TCCCCTACTGCTGCCTGGAGTTTTCGGCAGTCAAGCCTCTTC |
28807 - 28824 | N |
CGGCAGTCAAGCCTCTTC |
36643-36664 | 4.55 |
0 |
41.34 |
15.3 |
32 |
CoV2ID218 |
LAMP backward inner primer |
Wang_N_BIP |
TCCTGCTAGAATGGCTGGCAATTTTTTTTGCTCTCAAGCTGGTTCA |
28953 - 28973 | N |
TGAACCAGCTTGAGAGCAAAA |
36670-36691 | 0 |
0 |
36.36 |
12.12 |
32 |
CoV2ID219 |
LAMP loop backward primer |
Wang_N_LB |
GCGGTGATGCTGCTCT |
28914 - 28929 | N |
GCGGTGATGCTGCTCT |
36693-36708 | 6.25 |
0 |
44.35 |
16.87 |
32 |
CoV2ID220 |
RPA forward primer |
E-Sarbeco_F1_RPA |
GAAGAGACAGGTACGTTAATAGTTAATAGCGT |
26263 - 26294 | E |
GAAGAGACAGGTACGTTAATAGTTAATAGCGT |
33925-33956 | 3.12 |
20 |
30.95 |
18.02 |
33 |
CoV2ID221 |
RPA reverse primer |
E-Sarbeco-R2_RPA |
ACGTTAACAATATTGCAGCAGTACGCACACA |
26360 - 26390 | E |
TGTGTGCGTACTGCTGCAATATTGTTAACGT |
34022-34052 | 16.13 |
80 |
51 |
49.04 |
33 |
CoV2ID222 |
RPA forward primer |
2019-nCoV_N2-F_RPA |
ACAAGGAACTGATTACAAACATTGGCCGCAAA |
29152 - 29183 | N |
ACAAGGAACTGATTACAAACATTGGCCGCAAA |
37020-37051 | 18.75 |
0 |
54.32 |
24.36 |
33 |
CoV2ID223 |
RPA reverse primer |
2019-nCoV_N2-R_RPA |
TTCCATGCCAATGCGCGACATTCCGAAGAA |
29213 - 29242 | N |
TTCTTCGGAATGTCGCGCATTGGCATGGAA |
37081-37110 | 10 |
40 |
45.71 |
31.9 |
33 |
CoV2ID224 |
PCR primer forward |
Lamb_orf1ab_F |
ATTTGGTGCCACTTCTGCTGC |
3148 - 3168 | ORF1ab |
ATTTGGTGCCACTTCTGCTGC |
4793-4813 | 0 |
0 |
30.61 |
10.2 |
34 |
CoV2ID225 |
PCR primer reverse |
Lamb_orf1ab_R |
TCACTGCCGTCTTGTTGACCA |
3229 - 3249 | ORF1ab |
TGGTCAACAAGACGGCAGTGA |
5005-5025 | 0 |
0 |
43.76 |
14.59 |
34 |
CoV2ID226 |
LAMP outer forward primer |
Yang_ORF1ab_F3 |
GTTACGATGGTGGCTGTA |
14885 - 14902 | ORF1ab |
GTTACGATGGTGGCTGTA |
18142-18159 | 66.67 |
60 |
83.33 |
70 |
35 |
CoV2ID227 |
LAMP outer backward primer |
Yang_ORF1ab_B3 |
CTCAAATGAATCTTAAGTATGCC |
15059 - 15081 | ORF1ab |
CTCAAATGAATCTTAAGTATGCC |
18316-18338 | 65.22 |
60 |
83.23 |
69.48 |
35 |
CoV2ID228 |
LAMP forward inner primer |
Yang_ORF1ab_FIP |
GCTAACCAAGTCATCGTCAATCCATTTAATAAATGGGGTAAGGCT |
14952 - 14976 | ORF1ab |
TCCATTTAATAAATGGGGTAAGGCT |
18209-18233 | 56 |
60 |
80.57 |
65.52 |
35 |
CoV2ID229 |
LAMP backward inner primer |
Yang_ORF1ab_BIP |
AATGAGTTATGAGGATCAAGATGCAACGTAATGTCATCCCTACTATAA |
15035 - 15058 | ORF1ab |
AACGTAATGTCATCCCTACTATAA |
18251-18275 | 40 |
20 |
69.71 |
43.24 |
35 |
CoV2ID230 |
LAMP loop forward primer |
Yang_ORF1ab_LF |
ACCTAGACAAATCAGCTGGT |
14930 - 14949 | ORF1ab |
ACCTAGACAAATCAGCTGGT |
18187-18206 | 45 |
80 |
70.48 |
65.16 |
35 |
CoV2ID231 |
LAMP loop backward primer |
Yang_ORF1ab_LB |
CTTTTCGCATATACAAA |
15019 - 15035 | ORF1ab |
CTTTTCGCATATACAAA |
18276-18292 | 35.29 |
40 |
67.51 |
47.6 |
35 |
CoV2ID232 |
LAMP outer forward primer |
Yang_E_F3 |
AGCTGATGAGTACGAACTT |
26226 - 26244 | E |
AGCTGATGAGTACGAACTT |
33857-33868 | 0 |
0 |
26.59 |
8.86 |
35 |
CoV2ID233 |
LAMP outer backward primer |
Yang_E_B3 |
ACTCTCGTGTTAAAAATCTGAA |
26420 - 26441 | E |
ACTCTCGTGTTAAAAATCTGAA |
34121-34132 | 0 |
0 |
43.65 |
14.55 |
35 |
CoV2ID234 |
LAMP forward inner primer |
Yang_E_FIP |
TTCGTTTCGGAAGAGACAGTACTTCTTTTTCTTGCTTTCGTGGT |
26293 - 26318 | E |
GTACTTCTTTTTCTTGCTTTCGTGGT |
33955-33980 | 11.54 |
20 |
44.87 |
25.47 |
35 |
CoV2ID235 |
LAMP backward inner primer |
Yang_E_BIP |
TTGCTAGTTACACTAGCCATCCTTACGTGAGTCTTGTAAAACCT |
26387 - 26406 | E |
ACGTGAGTCTTGTAAAACCT |
33985-34010 | 23.08 |
20 |
51.28 |
31.45 |
35 |
CoV2ID236 |
LAMP loop forward primer |
Yang_E_LF |
GTACGTTAATAGTTAATAGCG |
26273 - 26293 | E |
GTACGTTAATAGTTAATAGCG |
33935-33955 | 0 |
0 |
29.02 |
9.67 |
35 |
CoV2ID237 |
LAMP loop backward primer |
Yang_E_LB |
GCGCTTCGATTGTGTGC |
26350 - 26366 | E |
GCGCTTCGATTGTGTGC |
34012-34028 | 29.41 |
0 |
59.38 |
29.6 |
35 |
CoV2ID238 |
LAMP forward inner primer |
Yang_N_FIP |
CAATGCTGCAATCGTGCTACGCTTCTACGCAGAAGGGAGCA |
28782 - 28802 | N |
GCTTCTACGCAGAAGGGAGCA |
36540-36560 | 0 |
0 |
52.38 |
17.46 |
35 |
CoV2ID239 |
LAMP backward inner primer |
Yang_N_BIP |
GGCGGCAGTCAAGCCTCTTCAACTCCAGGCAGCAGTAGG |
28861 - 28882 | N |
TTCAACTCCAGGCAGCAGTAGG |
36640-36661 | 4.55 |
0 |
37.88 |
14.14 |
35 |
CoV2ID240 |
LAMP loop forward primer |
Yang_N_LF |
CTTCCTCAAGGAACAAC |
28754 - 28770 | N |
CTTCCTCAAGGAACAAC |
36512-36528 | 0 |
0 |
50.14 |
16.71 |
35 |
CoV2ID241 |
LAMP loop backward primer |
Yang_N_LB |
ACGTAGTCGCAACAGTTCAAGAAATT |
28837 - 28862 | N |
ACGTAGTCGCAACAGTTCAAGAAATT |
36617-36641 | 16 |
20 |
48.95 |
28.32 |
35 |
CoV2ID242 |
LAMP outer forward primer |
Orf1a-A-F3 |
CTGCACCTCATGGTCATGTT |
498 - 517 | ORF1ab |
CTGCACCTCATGGTCATGTT |
936-955 | 10 |
20 |
49.76 |
26.59 |
36 |
CoV2ID243 |
LAMP outer backward primer |
Orf1a-A-B3 |
AGCTCGTCGCCTAAGTCAA |
693 - 711 | ORF1ab |
TTGACTTAGGCGACGAGCT |
1217-1229 | 23.08 |
20 |
59.71 |
34.26 |
36 |
CoV2ID244 |
LAMP forward inner primer |
Orf1a-A-FIP |
GAGGGACAAGGACACCAAGTGTATGGTTGAGCTGGTAGCAGA |
517 - 537 | ORF1ab |
TATGGTTGAGCTGGTAGCAGA |
1011-1032 | 0 |
0 |
42.42 |
14.14 |
36 |
CoV2ID245 |
LAMP backward inner primer |
Orf1a-A-BIP |
CCAGTGGCTTACCGCAAGGTTTTAGATCGGCGCCGTAAC |
669 - 687 | ORF1ab |
GTTACGGCGCCGATCTAAA |
1186-1204 | 0 |
0 |
31.58 |
10.53 |
36 |
CoV2ID246 |
LAMP loop forward primer |
Orf1a-A-LF |
CCGTACTGAATGCCTTCGAGT |
538 - 558 | ORF1ab |
ACTCGAAGGCATTCAGTACGG |
977-997 | 0 |
0 |
32.43 |
10.81 |
36 |
CoV2ID247 |
LAMP loop backward primer |
Orf1a-A-LB |
TTCGTAAGAACGGTAATAAAGGAGC |
633 - 657 | ORF1ab |
TTCGTAAGAACGGTAATAAAGGAGC |
1150-1174 | 8 |
0 |
41.9 |
16.63 |
36 |
CoV2ID248 |
LAMP outer forward primer |
Orf1a-B-F3 |
TCATCAAACGTTCGGATGCT |
474 - 493 | ORF1ab |
TCATCAAACGTTCGGATGCT |
906-917 | 0 |
0 |
33.33 |
11.11 |
36 |
CoV2ID249 |
LAMP outer backward primer |
Orf1a-B-B3 |
TATGGCCACCAGCTCCTT |
651 - 668 | ORF1ab |
AAGGAGCTGGTGGCCATA |
1168-1185 | 0 |
0 |
27.25 |
9.08 |
36 |
CoV2ID250 |
LAMP forward inner primer |
Orf1a-B-FIP |
CGACCGTACTGAATGCCTTCGAGAACTGCACCTCATGGTCAT |
495 - 514 | ORF1ab |
GAACTGCACCTCATGGTCAT |
978-1000 | 0 |
0 |
35.4 |
11.8 |
36 |
CoV2ID251 |
LAMP backward inner primer |
Orf1a-B-BIP |
AGACACTTGGTGTCCTTGTCCCAGAAGAACCTTGCGGTAAGC |
614 - 633 | ORF1ab |
GCTTACCGCAAGGTTCTTCT |
1009-1030 | 0 |
0 |
42.86 |
14.29 |
36 |
CoV2ID252 |
LAMP loop forward primer |
Orf1a-B-LF |
CTGCTACCAGCTCAACCATAAC |
515 - 536 | ORF1ab |
GTTATGGTTGAGCTGGTAGCAG |
953-975 | 4.35 |
0 |
44.31 |
16.22 |
36 |
CoV2ID253 |
LAMP loop backward primer |
Orf1a-B-LB |
TCATGTGGGCGAAATACCAGT |
592 - 612 | ORF1ab |
TCATGTGGGCGAAATACCAGT |
1031-1051 | 0 |
0 |
36.51 |
12.17 |
36 |
CoV2ID254 |
LAMP outer backward primer |
Orf1a-C-B3 |
GATCAGTGCCAAGCTCGTC |
704 - 722 | ORF1ab |
GACGAGCTTGGCACTGATC |
1235-1251 | 0 |
0 |
41.74 |
13.91 |
36 |
CoV2ID255 |
LAMP forward inner primer |
Orf1a-C-FIP |
GAGGGACAAGGACACCAAGTGTGGTAGCAGAACTCGAAGGC |
528 - 547 | ORF1ab |
TGGTAGCAGAACTCGAAGGC |
1011-1032 | 0 |
0 |
42.42 |
14.14 |
36 |
CoV2ID256 |
LAMP loop forward primer |
Orf1a-C-LF |
ACCACTACGACCGTACTGAAT |
548 - 568 | ORF1ab |
ATTCAGTACGGTCGTAGTGGT |
987-1007 | 0 |
0 |
39.91 |
13.3 |
36 |
CoV2ID257 |
LAMP outer forward primer |
Zhu_Orf1ab_F3 |
GGATTTTGTGACTTAAAAGGTAAG |
13286 - 13309 | ORF1ab |
GGATTTTGTGACTTAAAAGGTAAG |
16513-16536 | 41.67 |
60 |
68.85 |
56.84 |
37 |
CoV2ID258 |
LAMP outer backward primer |
Zhu_Orf1ab_B3 |
GGTTTGCGGTGTAAGTGCAGCCCGT |
13470 - 13494 | ORF1ab |
GGTTTGCGGTGTAAGTGCAGCCCGT |
16708-16726 | 36.84 |
20 |
66.92 |
41.25 |
37 |
CoV2ID259 |
LAMP forward inner primer |
Zhu_Orf1ab_FIP |
TGTACAAATACCTACAACTTGTGACACTTAAAAACACAGTCTGTACCG |
13355 - 13379 | ORF1ab |
ACACTTAAAAACACAGTCTGTACCG |
16582-16606 | 28 |
40 |
57.52 |
41.84 |
37 |
CoV2ID260 |
LAMP backward inner primer |
Zhu_Orf1ab_BIP |
TCTGCGGTATGTGGAAAGGTTATGCTGATGCACAATCGTTT |
13445 - 13462 | ORF1ab |
GCTGATGCACAATCGTTT |
16607-16630 | 25 |
60 |
59.92 |
48.31 |
37 |
CoV2ID261 |
LAMP loop forward primer |
Zhu_Orf1ab_LF |
CTAATGACCCTGTGGGTTT |
13335 - 13353 | ORF1ab |
CTAATGACCCTGTGGGTTT |
16562-16580 | 36.84 |
20 |
61.4 |
39.41 |
37 |
CoV2ID262 |
LAMP loop backward primer |
Zhu_Orf1ab_LB |
GAACCCATGCTTCAGTC |
13427 - 13443 | ORF1ab |
GAACCCATGCTTCAGTC |
16664-16680 | 11.76 |
20 |
47.62 |
26.46 |
37 |
CoV2ID263 |
LAMP outer forward primer |
Zhu_N_F3 |
CTACCTAGGAACTGGGCC |
28606 - 28623 | N |
CTACCTAGGAACTGGGCC |
36364-36381 | 5.56 |
0 |
49.74 |
18.43 |
37 |
CoV2ID264 |
LAMP outer backward primer |
Zhu_N_B3 |
GGCAGTCAAGCCTCTTCT |
28808 - 28825 | N |
GGCAGTCAAGCCTCTTCT |
36566-36583 | 16.67 |
0 |
51.85 |
22.84 |
37 |
CoV2ID265 |
LAMP forward inner primer |
Zhu_N_FIP |
CCTATGGTGCTAACAAAGACTGAGGGAGCCTTGAATACACC |
28676 - 28698 | N |
ACTGAGGGAGCCTTGAATACACC |
36434-36456 | 0 |
0 |
49.48 |
16.49 |
37 |
CoV2ID266 |
LAMP backward inner primer |
Zhu_N_BIP |
AATCCTGCTAACAATGCTGCAATCCTACGCAGAAGGGAGCAG |
28786 - 28803 | N |
CTACGCAGAAGGGAGCAG |
36479-36502 | 0 |
0 |
46.23 |
15.41 |
37 |
CoV2ID267 |
LAMP loop forward primer |
Zhu_N_LF |
GCATCATATGGGTTGCAAC |
28659 - 28677 | N |
GCATCATATGGGTTGCAAC |
36417-36435 | 0 |
0 |
52.38 |
17.46 |
37 |
CoV2ID268 |
LAMP loop backward primer |
Zhu_N_LB |
CTTCCTCAAGGAACAACAT |
28754 - 28772 | N |
CTTCCTCAAGGAACAACAT |
36512-36530 | 0 |
0 |
50.38 |
16.79 |
37 |
CoV2ID269 |
PCR primer forward |
Amrane_S_F |
AAACTTGTGCCCTTTTGGTG |
22561 - 22580 | S |
AAACTTGTGCCCTTTTGGTG |
28216-28235 | 0 |
0 |
40.24 |
13.41 |
38 |
CoV2ID270 |
PCR primer reverse |
Amrane_S_R |
TGCTGATTCTCTTCCTGTTCC |
22620 - 22640 | S |
GGAACAGGAAGAGAATCAGCA |
28296-28316 | 4.76 |
0 |
35.83 |
13.53 |
38 |
CoV2ID271 |
Probe |
Amrane_S_P |
CGCCACCAGATTTGCATCTG |
22591 - 22610 | S |
CGCCACCAGATTTGCATCTG |
28246-28265 | 5 |
20 |
30.71 |
18.57 |
38 |
CoV2ID272 |
PCR primer forward |
Wu_For |
ATGGGTTGGGATTATCCTAAATGTGA |
15283 - 15308 | ORF1ab |
ATGGGTTGGGATTATCCTAAATGTGA |
18540-18565 | 76.92 |
80 |
92.31 |
83.08 |
39 |
CoV2ID273 |
PCR primer reverse |
Wu_Rev |
AGCAGTTGTGGCATCTCCTGATGAG |
15480 - 15504 | ORF1ab |
CTCATCAGGAGATGCCACAACTGCT |
18737-18761 | 44 |
0 |
68.57 |
37.52 |
39 |
CoV2ID274 |
Probe |
MGB Probe |
ATGCTTAGAATTATGGCCTCAC |
15325 - 15346 | ORF1ab |
ATGCTTAGAATTATGGCCTCAC |
18582-18603 | 27.27 |
0 |
53.25 |
26.84 |
39 |
CoV2ID275 |
PCR primer forward |
short_N_spk_2_F |
AAGACGGCATCATATGGGTTGC |
28653 - 28674 | N |
AAGACGGCATCATATGGGTTGC |
36411-36432 | 0 |
0 |
52.38 |
17.46 |
40 |
CoV2ID276 |
PCR primer reverse |
short_N_spk_1_R |
GGCAATGTTGTTCCTTGAGGAAG |
28754 - 28776 | N |
CTTCCTCAAGGAACAACATTGCC |
36512-36534 | 0 |
0 |
50.72 |
16.91 |
40 |
CoV2ID277 |
LAMP outer forward primer |
Yu_orf1ab_F3 |
CCACTAGAGGAGCTACTGTA |
15182 - 15201 | ORF1ab |
CCACTAGAGGAGCTACTGTA |
18439-18458 | 30 |
40 |
63.1 |
44.37 |
41 |
CoV2ID278 |
LAMP outer backward primer |
Yu_orf1ab_B3 |
TGACAAGCTACAACACGT |
15370 - 15387 | ORF1ab |
ACGTGTTGTAGCTTGTCA |
18627-18644 | 33.33 |
40 |
56.61 |
43.31 |
41 |
CoV2ID279 |
LAMP forward inner primer |
Yu_orf1ab_FIP |
AGGTGAGGGTTTTCTACATCACTATATTGGAACAAGCAAATTCTATGG |
15205 - 15227 | ORF1ab |
ATTGGAACAAGCAAATTCTATGG |
18513-18538 | 38.46 |
20 |
65.02 |
41.16 |
41 |
CoV2ID280 |
LAMP backward inner primer |
Yu_orf1ab_BIP |
ATGGGTTGGGATTATCCTAAATGTGTGCGAGCAAGAACAAGTG |
15344 - 15361 | ORF1ab |
CACTTGTTCTTGCTCGCA |
18540-18564 | 76 |
100 |
92 |
89.33 |
41 |
CoV2ID281 |
LAMP loop forward primer |
Yu_orf1ab_LF |
CAGTTTTTAACATGTTGTGCCAACC |
15229 - 15253 | ORF1ab |
GGTTGGCACAACATGTTAAAAACTG |
18486-18510 | 40 |
0 |
65.71 |
35.24 |
41 |
CoV2ID282 |
LAMP loop backward primer |
Yu_orf1ab_LB |
ATAGAGCCATGCCTAACATGCTT |
15308 - 15330 | ORF1ab |
ATAGAGCCATGCCTAACATGCTT |
18565-18587 | 47.83 |
60 |
74.53 |
60.79 |
41 |
CoV2ID283 |
PCR primer forward |
M-475-F |
TGTGACATCAAGGACCTGCC |
26997 - 27016 | M |
TGTGACATCAAGGACCTGCC |
34717-34732 | 18.75 |
60 |
47.62 |
42.12 |
42 |
CoV2ID284 |
PCR primer reverse |
M-574-R |
CTGAGTCACCTGCTACACGC |
27077 - 27096 | M |
GCGTGTAGCAGGTGACTCAG |
34797-34816 | 5 |
0 |
40 |
15 |
42 |
CoV2ID285 |
Probe |
M-507-P |
TGTTGCTACATCACGAACGC |
27029 - 27048 | M |
TGTTGCTACATCACGAACGC |
34745-34764 | 20 |
0 |
50.71 |
23.57 |
42 |
CoV2ID286 |
PCR primer forward |
S-1850-F |
GCACAGAAGTCCCTGTTGCT |
23412 - 23431 | S |
GCACAGAAGTCCCTGTTGCT |
29504-29523 | 0 |
0 |
38.57 |
12.86 |
42 |
CoV2ID287 |
PCR primer reverse |
S-1949-R |
AAACAGCCTGCACGTGTTTG |
23492 - 23511 | S |
CAAACACGTGCAGGCTGTTT |
29630-29649 | 0 |
0 |
50.48 |
16.83 |
42 |
CoV2ID288 |
Probe |
S-1884-P |
ACTTACTCCTACTTGGCGTGT |
23446 - 23466 | S |
ACTTACTCCTACTTGGCGTGT |
29538-29558 | 0 |
0 |
40.14 |
13.38 |
42 |
CoV2ID289 |
LAMP outer forward primer |
S1-F3 |
AGTTTGAGCCATCAACTCA |
3084 - 3102 | ORF1ab |
AGTTTGAGCCATCAACTCA |
4641-4657 | 17.65 |
20 |
52.1 |
29.92 |
43 |
CoV2ID290 |
LAMP outer backward primer |
S1-B3 |
TGAACCTCAACAATTGTTTGA |
3271 - 3291 | ORF1ab |
TCAAACAATTGTTGAGGTTCA |
5047-5067 | 4.76 |
0 |
42.86 |
15.87 |
43 |
CoV2ID291 |
LAMP forward inner primer |
S1-F1P |
CAGGTTGAAGAGCAGCAGAAGTGTACTGAAGATGATTACCAAGG |
3114 - 3135 | ORF1ab |
GTACTGAAGATGATTACCAAGG |
4705-4723 | 5.26 |
0 |
48.87 |
18.04 |
43 |
CoV2ID292 |
LAMP backward inner primer |
S1-B1P |
AGCAAGAAGAAGATTGGTTAGATGATGTCTGATTGTCCTCACTG |
3244 - 3262 | ORF1ab |
CAGTGAGGACAATCAGACA |
5020-5038 | 0 |
0 |
32.33 |
10.78 |
43 |
CoV2ID293 |
LAMP loop forward primer |
S1-LPF |
GGCACCAAATTCCAAAGGT |
3139 - 3157 | ORF1ab |
ACCTTTGGAATTTGGTGCC |
4784-4802 | 0 |
0 |
32.08 |
10.69 |
43 |
CoV2ID294 |
LAMP loop backward primer |
S1-LPB |
AACTGTTGGTCAACAAGACGG |
3223 - 3243 | ORF1ab |
AACTGTTGGTCAACAAGACGG |
4999-5019 | 0 |
0 |
43.54 |
14.51 |
43 |
CoV2ID295 |
LAMP outer forward primer |
S2-F3 |
ATTCTAAGCACACGCCTAT |
22173 - 22191 | S |
ATTCTAAGCACACGCCTAT |
27158-27176 | 15.79 |
20 |
46.37 |
27.39 |
43 |
CoV2ID296 |
LAMP outer backward primer |
S2-B3 |
GAAGATAACCCACATAATAAGCT |
22351 - 22373 | S |
AGCTTATTATGTGGGTTATCTTC |
27827-27847 | 9.52 |
40 |
48.07 |
32.53 |
43 |
CoV2ID297 |
LAMP forward inner primer |
S2-F1P |
ACCTATTGGCAAATCTACCAATGGTTTAGTGCGTGATCTCCCT |
22195 - 22213 | S |
TTTAGTGCGTGATCTCCCT |
27347-27364 | 5.56 |
20 |
45.5 |
23.69 |
43 |
CoV2ID298 |
LAMP backward inner primer |
S2-B1P |
ATCACTAGGTTTCAAACTTTACTTGCCTGTCCAACCTGAAGAAGA |
22322 - 22140 | S |
TCTTCTTCAGGTTGGACAG |
27648-27666 | 10.53 |
20 |
47.62 |
26.05 |
43 |
CoV2ID299 |
LAMP loop forward primer |
S2-LPF |
TTCTAAAGCCGAAAAACCCTG |
22214 - 22234 | S |
CAGGGTTTTTCGGCTTTAGAA |
27328-27348 | 9.52 |
0 |
55.56 |
21.69 |
43 |
CoV2ID300 |
LAMP loop backward primer |
S2-LPB |
CATAGAAGTTATTTGACTCCTGGTG |
22295 - 22319 | S |
CATAGAAGTTATTTGACTCCTGGTG |
27573-27596 | 4.17 |
20 |
41.67 |
21.95 |
43 |
CoV2ID301 |
LAMP outer forward primer |
S3-F3 |
CACCTTATGGGTTGGGATT |
15277 - 15295 | ORF1ab |
CACCTTATGGGTTGGGATT |
18534-18552 | 63.16 |
80 |
81.2 |
74.79 |
43 |
CoV2ID302 |
LAMP outer backward primer |
S3-B3 |
AACATATAGTGAACCGCCA |
15447 - 15465 | ORF1ab |
TGGCGGTTCACTATATGTT |
18704-18722 | 26.32 |
20 |
64.66 |
36.99 |
43 |
CoV2ID303 |
LAMP forward inner primer |
S3-F1P |
GTTTGCGAGCAAGAACAAGTGAATGTGATAGAGCCATGCC |
15302 - 15320 | ORF1ab |
AATGTGATAGAGCCATGCC |
18600-18621 | 31.82 |
60 |
58.66 |
50.16 |
43 |
CoV2ID304 |
LAMP backward inner primer |
S3-B1P |
ATACAACGTGTTGTAGCTTGTCACACATGACCATTTCACTCAA |
15427 - 15448 | ORF1ab |
TTGAGTGAAATGGTCATGTGTG |
18622-18647 | 34.62 |
40 |
57.69 |
44.1 |
43 |
CoV2ID305 |
LAMP loop forward primer |
S3-LPF |
GGCCATAATTCTAAGCATGTTA |
15321 - 15342 | ORF1ab |
TAACATGCTTAGAATTATGGCC |
18578-18599 | 27.27 |
20 |
56.93 |
34.73 |
43 |
CoV2ID306 |
LAMP loop backward primer |
S3-LPB |
ATTAGCTAATGAGTGTGCTCAAGTA |
15402 - 15426 | ORF1ab |
ATTAGCTAATGAGTGTGCTCAAGTA |
18659-18683 | 48 |
20 |
73.9 |
47.3 |
43 |
CoV2ID307 |
LAMP outer forward primer |
S4-F3 |
ACATGCTTAGAATTATGGCC |
15323 - 15342 | ORF1ab |
ACATGCTTAGAATTATGGCC |
18580-18599 | 30 |
20 |
57.38 |
35.79 |
43 |
CoV2ID308 |
LAMP outer backward primer |
S4-B3 |
GCTTGACAAATGTTAAAAACACT |
15514 - 15536 | ORF1ab |
AGTGTTTTTAACATTTGTCAAGC |
18771-18793 | 56.52 |
20 |
79.3 |
51.94 |
43 |
CoV2ID309 |
LAMP forward inner primer |
S4-F1P |
TTGAGCACACTCATTAGCTAATCTATCACTTGTTCTTGCTCGCA |
15343 - 15361 | ORF1ab |
TCACTTGTTCTTGCTCGCA |
18655-18680 | 50 |
60 |
75.27 |
61.76 |
43 |
CoV2ID310 |
LAMP backward inner primer |
S4-B1P |
GAGTGAAATGGTCATGTGTGGCGCATAAGCAGTTGTGGCA |
15492 - 15509 | ORF1ab |
TGCCACAACTGCTTATGC |
18686-18708 | 30.43 |
40 |
64.8 |
45.08 |
43 |
CoV2ID311 |
LAMP loop forward primer |
S4-LPF |
GACAAGCTACAACACGTTGTATGT |
15363 - 15386 | ORF1ab |
ACATACAACGTGTTGTAGCTTGTC |
18620-18643 | 37.5 |
0 |
59.92 |
32.47 |
43 |
CoV2ID312 |
LAMP loop backward primer |
S4-LPB |
ACTATATGTTAAACCAGGTGGAACC |
15456 - 15480 | ORF1ab |
ACTATATGTTAAACCAGGTGGAACC |
18713-18737 | 52 |
20 |
74.1 |
48.7 |
43 |
CoV2ID313 |
LAMP outer forward primer |
S5-F3 |
ATGGCCTCACTTGTTCTT |
15337 - 15354 | ORF1ab |
ATGGCCTCACTTGTTCTT |
18594-18611 | 22.22 |
40 |
47.62 |
36.61 |
43 |
CoV2ID314 |
LAMP outer backward primer |
S5-B3 |
TAACATTGGCCGTGACAG |
15536 - 15553 | ORF1ab |
CTGTCACGGCCAATGTTA |
18793-18810 | 27.78 |
20 |
64.02 |
37.27 |
43 |
CoV2ID315 |
LAMP forward inner primer |
S5-F1P |
TTGAGCACACTCATTAGCTAATCTATGCTCGCAAACATACAACG |
15354 - 15372 | ORF1ab |
TGCTCGCAAACATACAACG |
18655-18680 | 50 |
60 |
75.27 |
61.76 |
43 |
CoV2ID316 |
LAMP backward inner primer |
S5-B1P |
GTCATGTGTGGCGGTTCACTACACTATTAGCATAAGCAGTTG |
15497 - 15518 | ORF1ab |
CAACTGCTTATGCTAATAGTGT |
18754-18775 | 50 |
40 |
77.71 |
55.9 |
43 |
CoV2ID317 |
LAMP loop forward primer |
S5-LPF |
ACGGTGTGACAAGCTACAACA |
15373 - 15393 | ORF1ab |
TGTTGTAGCTTGTCACACCGT |
18630-18650 | 33.33 |
20 |
58.05 |
37.13 |
43 |
CoV2ID318 |
LAMP loop backward primer |
S5-LPB |
CCAGGTGGAACCTCATCAGGAG |
15469- 15490 | ORF1ab |
CCAGGTGGAACCTCATCAGGAG |
18726-18747 | 50 |
80 |
70.78 |
66.93 |
43 |
CoV2ID319 |
PCR primer forward |
Smyrlaki_N1_F |
GACCCCAAAATCAGCGAA |
28287 - 28304 | N |
GACCCCAAAATCAGCGAA |
36045-36062 | 0 |
0 |
52.38 |
17.46 |
44 |
CoV2ID320 |
PCR primer forward |
Smyrlaki_E_F |
GGAAGAGACAGGTACGTTAATA |
26262 - 26283 | E |
GGAAGAGACAGGTACGTTAATA |
33924-33945 | 0 |
0 |
27.92 |
9.31 |
44 |
CoV2ID321 |
PCR primer reverse |
Smyrlaki_E_R |
AGCAGTACGCACACAATCGAA |
26354 - 26374 | E |
TTCGATTGTGTGCGTACTGCT |
34016-34036 | 23.81 |
20 |
56.46 |
33.42 |
44 |
CoV2ID322 |
PCR primer forward |
Smyrlaki_RdRP_F |
GTCATGTGTGGCGGTTCACT |
15439 - 15458 | ORF1ab |
GTCATGTGTGGCGGTTCACT |
18696-18715 | 25 |
0 |
61.19 |
28.73 |
44 |
CoV2ID323 |
PCR primer reverse |
Smyrlaki_RdRP_R |
CAACACTATTAGCATAAGCAGTTGT |
15519 - 15496 | ORF1ab |
ACAACTGCTTATGCTAATAGTGTT |
18753-18776 | 50 |
60 |
77.18 |
62.39 |
44 |
CoV2ID324 |
PCR primer forward |
Li_S_F |
TGTACTTGGACAATCAAAAAGAGTTGAT |
24658 - 24685 | S |
TGTACTTGGACAATCAAAAAGAGTTGAT |
30974-31001 | 28.57 |
0 |
58.33 |
28.97 |
45 |
CoV2ID325 |
PCR primer reverse |
Li_S_R |
AGGAGCAGTTGTGAAGTTCTTTTC |
24776 - 24799 | S |
GAAAAGAACTTCACAACTGCTCCT |
31092-31115 | 0 |
0 |
44.25 |
14.75 |
45 |
CoV2ID326 |
gRNA |
N-gene gRNA #1 |
UAAUUUCUACUAAGUGUAGAUCCCCCAGCGCUUCAGCGUUC |
29196 - 29215 | N |
CCCCCAGCGCTTCAGCGTTC |
37064-37083 | 25 |
40 |
55.71 |
40.24 |
10 |
CoV2ID327 |
gRNA |
E-gene gRNA #2 |
UAAUUUCUACUAAGUGUAGAUGUGGUAUUCUUGCUAGUUAC |
26314 - 26333 | E |
GTGGTATTCTTGCTAGTTAC |
33976-33995 | 15 |
20 |
44.52 |
26.51 |
10 |
CoV2ID328 |
gRNA |
N-gene gRNA #2 |
UAAUUUCUACUAAGUGUAGAUGCAAUGUUGUUCCUUGAGGA |
28756 - 28775 | N |
TCCTCAAGGAACAACATTGC |
36514-36533 | 0 |
0 |
51.43 |
17.14 |
10 |
CoV2ID329 |
gRNA |
E-gene gRNA #1 |
UAAUUUCUACUAAGUGUAGAUUUGCUUUCGUGGUAUUCUUG |
26306 - 26325 | E |
TTGCTTTCGTGGTATTCTTG |
33968-33987 | 5 |
0 |
42.86 |
15.95 |
10 |
CoV2ID330 |
PCR primer forward |
SARS-CoV-2-15283-F |
ATGGGTTGGGATTATCCTAAATG |
15283 - 15305 | ORF1ab |
ATGGGTTGGGATTATCCTAAATG |
18540-18562 | 78.26 |
80 |
92.55 |
83.6 |
46 |
CoV2ID331 |
PCR primer reverse |
SARS-CoV-2-15887-R |
TGTTGAGAGCAAAATTCATG |
15868 - 15887 | ORF1ab |
CATGAATTTTGCTCTCAACA |
19137-19156 | 75 |
100 |
87.62 |
87.54 |
46 |
CoV2ID332 |
PCR primer forward |
SARS-CoV-2-15286-F |
GGTTGGGATTATCCTAAATGTGA |
15286 - 15308 | ORF1ab |
GGTTGGGATTATCCTAAATGTGA |
18543-18565 | 73.91 |
80 |
91.3 |
81.74 |
46 |
CoV2ID333 |
PCR primer reverse |
SARS-CoV-2-15725-R |
GCATCGTCAGAGAGTATCATCAT |
15703 - 15725 | ORF1ab |
ATGATGATACTCTCTGACGATGC |
18972-18994 | 65.22 |
100 |
81.99 |
82.4 |
46 |
CoV2ID334 |
PCR primer forward |
Wuhan-TM2020For |
TCGTGCTACAACTTCCTCAAG |
28743 - 28763 | N |
TCGTGCTACAACTTCCTCAAG |
36501-36521 | 0 |
0 |
44.67 |
14.89 |
47 |
CoV2ID335 |
PCR Probe |
Wuhan-TM2020Probe |
CCGCCTCTGCTCCCTTCTGC |
28790 - 28809 | N |
GCAGAAGGGAGCAGAGGCGG |
36548-36567 | 0 |
0 |
46.9 |
15.63 |
47 |
CoV2ID336 |
PCR primer reverse |
SARS2-28875R-G |
CTGCCTGGAGTTGAATTTCTTG |
28854 - 28875 | N |
CAAGAAATTCAACTCCAGGCAG |
36633-36654 | 9.09 |
20 |
40.04 |
23.04 |
47 |
CoV2ID337 |
PCR primer reverse |
SARS2-28875R-A |
CTGCCTGGAGTTGAATTTCTTA |
28854 -28875 | N |
CAAGAAATTCAACTCCAGGCAG |
36634-36654 | 4.76 |
0 |
37.19 |
13.98 |
47 |
CoV2ID338 |
LAMP outer forward primer |
ORF7a-F3 |
TCTTGGCACTGATAACACTC |
27410 - 27429 | ORF7a |
TCTTGGCACTGATAACACTC |
35149-35168 | 0 |
0 |
52.38 |
17.46 |
48 |
CoV2ID339 |
LAMP outer backward primer |
ORF7a-B3 |
GATCTGGCACGTAACTGAT |
27617 - 27635 | ORF7a |
ATCAGTTACGTGCCAGATC |
35356-35374 | 0 |
0 |
52.38 |
17.46 |
48 |
CoV2ID340 |
LAMP forward inner primer |
ORF7a-FIP |
TCCAGAAGAGCAAGGTTCTTTTAAAGCTACTTGTGAGCTTTATCACT |
27430 - 27451 | ORF7a |
GCTACTTGTGAGCTTTATCACT |
35222-35246 | 4 |
0 |
47.43 |
17.14 |
48 |
CoV2ID341 |
LAMP backward inner primer |
ORF7a-BIP |
AGCTGATAACAAATTTGCACTGACGTTTTACGCCGTCAGGAC |
27593 - 27610 | ORF7a |
GTCCTGACGGCGTAAAAC |
35279-35302 | 0 |
0 |
52.38 |
17.46 |
48 |
CoV2ID342 |
LAMP loop forward primer |
ORF7a-LF |
GTTGTACCTCTAACACACTCTTGGT |
27452 - 27476 | ORF7a |
ACCAAGAGTGTGTTAGAGGTACAAC |
35191-35215 | 4 |
0 |
43.81 |
15.94 |
48 |
CoV2ID343 |
LAMP loop backward primer |
ORF7a-LB |
GCTTTAGCACTCAATTTGCTTTTGC |
27566 - 27590 | ORF7a |
GCTTTAGCACTCAATTTGCTTTTGC |
35305-35329 | 0 |
0 |
40.57 |
13.52 |
48 |
CoV2ID344 |
LAMP LAMP outer forward primer |
M-GENE-F3 |
AGTAATAGGTTTCCTATTCCTTAC |
26588 - 26611 | M |
AGTAATAGGTTTCCTATTCCTTAC |
34295-34318 | 12.5 |
0 |
47.22 |
19.91 |
48 |
CoV2ID345 |
LAMP LAMP outer backward primer |
M-GENE-B3 |
AGCCACATCAAGCCTACA |
26783 - 26800 | M |
TGTAGGCTTGATGTGGCT |
34496-34513 | 27.78 |
0 |
58.73 |
28.84 |
48 |
CoV2ID346 |
LAMP forward inner primer |
M-GENE-FIP |
GCCATAACAGCCAGACCAAAATTAATGGATTTGTCTTCTACAATTTGC |
26613 - 26635 | M |
ATGGATTTGTCTTCTACAATTTGC |
34319-34342 | 29.17 |
40 |
59.13 |
42.77 |
48 |
CoV2ID347 |
LAMP backward inner primer |
M-GENE-BIP |
TTAGCTTGTTTTGTGCTTGCTGACAAGCCATTGCGATAGC |
267763 - 26780 | M |
GCTATCGCAATGGCTTGT |
34413-34431 | 10.53 |
20 |
53.63 |
28.05 |
48 |
CoV2ID348 |
LAMP loop forward primer |
M-GENE-LF |
CAAAAACCTATTCCTGTTGGCATAG |
26636 - 26660 | M |
CTATGCCAACAGGAATAGGTTTTTG |
34343-34367 | 12 |
20 |
49.71 |
27.24 |
48 |
CoV2ID349 |
LAMP loop backward primer |
M-GENE-LB |
CAGAATAAATTGGATCACCGGTGGA |
26735 - 26759 | M |
CAGAATAAATTGGATCACCGGTGGA |
34448-34472 | 4 |
0 |
43.43 |
15.81 |
48 |
CoV2ID350 |
LAMP loop backward primer |
M-GENE-LB-2 |
GAATAAATTGGATCACCGGTGGA |
26737 - 26759 | M |
GAATAAATTGGATCACCGGTGGA |
34450-34472 | 4.35 |
0 |
44.72 |
16.36 |
48 |
CoV2ID351 |
LAMP LAMP outer forward primer |
ORF3a-A-F3 |
CACTTCAGACTATTACCAGCT |
26013 - 26033 | ORF3a |
CACTTCAGACTATTACCAGCT |
33545-33565 | 4.76 |
20 |
42.63 |
22.46 |
48 |
CoV2ID352 |
LAMP LAMP outer backward primer |
ORF3a-A-B3 |
GCTTGTGCTTACAAAGGC |
26211 - 26228 | ORF3a |
GCCTTTGTAAGCACAAGC |
33842-33859 | 0 |
0 |
34.66 |
11.55 |
48 |
CoV2ID353 |
LAMP forward inner primer |
ORF3a-A-FIP |
GTTCTTCAGGCTCATCAACAATTTTCTCAACTCAATTGAGTACAGACA |
26037 - 26059 | ORF3a |
CTCAACTCAATTGAGTACAGACA |
33695-33713 | 10.53 |
0 |
46.37 |
18.97 |
48 |
CoV2ID354 |
LAMP backward inner primer |
ORF3a-A-BIP |
CCAAATTCACACAATCGACGGTTTAGTAGTCGTCGTCGGTT |
26189 - 26206 | ORF3a |
AACCGACGACGACTACTA |
33797-33814 | 0 |
0 |
39.42 |
13.14 |
48 |
CoV2ID355 |
LAMP loop forward primer |
ORF3a-A-LF |
TGAAGAAGGTAACATGTTCAACACC |
26062 - 26086 | ORF3a |
GGTGTTGAACATGTTACCTTCTTCA |
33632-33656 | 20 |
0 |
52.95 |
24.32 |
48 |
CoV2ID356 |
LAMP loop backward primer |
ORF3a-A-LB |
CGGAGTTGTTAATCCAGTAATGGAA |
26151 - 26175 | ORF3a |
CGGAGTTGTTAATCCAGTAATGGAA |
33759-33783 | 8 |
0 |
42.86 |
16.95 |
48 |
CoV2ID357 |
LAMP LAMP outer forward primer |
ORF3a-B-F3 |
ATTTTGTTCGCGCTACTG |
25472 - 25489 | ORF3a |
ATTTTGTTCGCGCTACTG |
32054-32071 | 0 |
0 |
38.1 |
12.7 |
48 |
CoV2ID358 |
LAMP LAMP outer backward primer |
ORF3a-B-B3 |
ACGAGCAAAAGGTGTGAG |
25665 - 25682 | ORF3a |
CTCACACCTTTTGCTCGT |
32994-33011 | 11.11 |
0 |
43.12 |
18.08 |
48 |
CoV2ID359 |
LAMP forward inner primer |
ORF3a-B-FIP |
CTCTGAAAAACAGCAAGAAGAGCAAGATACCGATACAAGCCTCAC |
25494- 25513 | ORF3a |
GATACCGATACAAGCCTCAC |
32077-32096 | 0 |
0 |
37.14 |
12.38 |
48 |
CoV2ID360 |
LAMP backward inner primer |
ORF3a-B-BIP |
TAACCCTCAAAAAGAGATGGCAACAAACAACAACAGCAAGTTG |
25635 - 25654 | ORF3a |
CAACTTGCTGTTGTTGTTTG |
32563-32575 | 0 |
0 |
45.42 |
15.14 |
48 |
CoV2ID361 |
LAMP loop forward primer |
ORF3a-B-LF |
ACAATAAGCCATCCGAAAGGGA |
25514 - 25535 | ORF3a |
TCCCTTTCGGATGGCTTATTGT |
32227-32247 | 0 |
0 |
34.92 |
11.64 |
48 |
CoV2ID362 |
LAMP loop backward primer |
ORF3a-B-LB |
CACTCTCCAAGGGTGTTCACT |
25607 - 25627 | ORF3a |
CACTCTCCAAGGGTGTTCACT |
32664-32679 | 0 |
0 |
25.3 |
8.43 |
48 |
CoV2ID363 |
LAMP forward inner primer |
GENE-N-T7-FIP |
TCTGGCCCAGTTCCTAGGTAGTTAATACGACTCACTATAGGCCAGACGAATTCGTGGTGG |
28545 - 28563 | N |
CCAGACGAATTCGTGGTGG |
36363-36384 | 4.55 |
0 |
49.78 |
18.11 |
48 |
CoV2ID364 |
LAMP forward inner primer |
ORF7-T7-FIP |
TCCAGAAGAGCAAGGTTCTTTTAAATAATACGACTCACTATAGGGCTACTTGTGAGCTTTATCACT |
27430 - 27451 | ORF7 |
GCTACTTGTGAGCTTTATCACT |
35222-35246 | 4 |
0 |
47.43 |
17.14 |
48 |
CoV2ID365 |
LAMP forward inner primer |
ORF3a-A-T7-FIP |
GTTCTTCAGGCTCATCAACAATTTTTAATACGACTCACTATAGGGCTCAACTCAATTGAGTACAGACA |
26037 - 26059 | ORF3a |
CTCAACTCAATTGAGTACAGACA |
33695-33713 | 10.53 |
0 |
46.37 |
18.97 |
48 |
CoV2ID366 |
gRNA |
Schermer_Orf1ab |
GATTTAGACTACCCCAAAAACGAAGGGGACTAAAACCCAACCTCTTCTGTAATTTTTAAACTAT |
6510 - 6537 | ORF1ab |
ATAGTTTAAAAATTACAGAAGAGGTTGG |
9082-9109 | 0 |
0 |
32.82 |
10.94 |
48 |
CoV2ID367 |
gRNA |
Schermer_S Gene |
GATTTAGACTACCCCAAAAACGAAGGGGACTAAAACGCAGCACCAGCTGTCCAACCTGAAGAAG |
22323 - 22350 | S |
CTTCTTCAGGTTGGACAGCTGGTGCTGC |
27649-27677 | 10.34 |
0 |
46.63 |
18.99 |
48 |
CoV2ID368 |
gRNA |
Schermer_Gene-N |
GATTTAGACTACCCCAAAAACGAAGGGGACTAAAACTTGTTAGCACCATAGGGAAGTCCAGCTT |
28626 - 28653 | N |
AAGCTGGACTTCCCTATGGTGCTAACAA |
36384-36411 | 0 |
0 |
52.38 |
17.46 |
48 |
CoV2ID369 |
gRNA |
Schermer_Orf7 |
GATTTAGACTACCCCAAAAACGAAGGGGACTAAAACGGATGAAATGGTGAATTGCCCTCGTATG |
27509 - 27535 | ORF7 |
CATACGAGGGCAATTCACCATTTCATCC |
35248-35275 | 0 |
0 |
52.38 |
17.46 |
48 |
CoV2ID370 |
gRNA |
Schermer_Orf3 |
GATTTAGACTACCCCAAAAACGAAGGGGACTAAAACTGTGAATTTGGACATGTTCTTCAGGCTC |
26107 - 26134 | ORF3 |
GAGCCTGAAGAACATGTCCAAATTCACA |
33701-33723 | 4.35 |
0 |
43.06 |
15.8 |
48 |
CoV2ID371 |
RPA forward primer |
Orf1ab-Fw_v1 |
GAAATTAATACGACTCACTATAGGGCGAAGTTGTAGGAGACATTATACTTAAACC |
6472 - 6501 | ORF1ab |
CGAAGTTGTAGGAGACATTATACTTAAACC |
9035-9064 | 10 |
0 |
40 |
16.67 |
48 |
CoV2ID372 |
RPA reverse primer |
Orf1ab-Rev_v1 |
TAGTAAGACTAGAATTGTCTACATAAGCAGC |
6554 - 6584 | ORF1ab |
GCTGCTTATGTAGACAATTCTAGTCTTACTA |
9130-9160 | 9.68 |
20 |
47.93 |
25.87 |
48 |
CoV2ID373 |
RPA forward primer |
S-RPA-Fw_v1 |
GAAATAATACGACTCACTATAGGGAGGTTTCAAACTTTACTTGCTTTACATAGA |
22271 - 22300 | S |
AGGTTTCAAACTTTACTTGCTTTACATAGA |
27466-27487 | 13.64 |
20 |
53.46 |
29.03 |
48 |
CoV2ID374 |
RPA reverse primer |
S-RPA-Rev_v1 |
TCCTAGGTTGAAGATAACCCACATAATAAG |
22353 - 22382 | S |
CTTATTATGTGGGTTATCTTCAACCTAGGA |
27828-27847 | 10 |
40 |
48.81 |
32.94 |
48 |
CoV2ID375 |
PCR primer forward |
Li_orf1ab_F |
TGATGATACTCTCTGACGATGCTGT |
15704 - 15728 | ORF1ab |
TGATGATACTCTCTGACGATGCTGT |
18973-18997 | 64 |
60 |
82.29 |
68.76 |
49 |
CoV2ID376 |
PCR primer reverse |
Li_orf1ab_R |
CTCAGTCCAACATTTTGCTTCAGA |
15823 - 15846 | ORF1ab |
TCTGAAGCAAAATGTTGGACTGAG |
19092-19115 | 41.67 |
0 |
73.81 |
38.49 |
49 |
CoV2ID377 |
PCR Probe |
Li_orf1ab_P |
ATGCATCTCAAGGTCTAGTG |
15749 - 15768 | ORF1ab |
ATGCATCTCAAGGTCTAGTG |
19018-19037 | 35 |
20 |
60.48 |
38.49 |
49 |
CoV2ID378 |
PCR primer forward |
BTstin_ORF1ab_F |
GGATCAAGAATCCTTTGGTGG |
13213 - 13233 | ORF1ab |
GGATCAAGAATCCTTTGGTGG |
16440-16460 | 57.14 |
100 |
74.83 |
77.32 |
50 |
CoV2ID379 |
PCR primer reverse |
BTstin_ORF1ab_R |
GTCACAAAATCCTTTAGGATTTGGA |
13273 - 13297 | ORF1ab |
TCCAAATCCTAAAGGATTTTGTGAC |
16500-16524 | 28 |
40 |
60.38 |
42.79 |
50 |
CoV2ID380 |
PCR Probe |
BTstin_ORF1ab_P |
CATCGTGTTGTCTGTACTGCCGTTGCC |
13236 - 13262 | ORF1ab |
CATCGTGTTGTCTGTACTGCCGTTGCC |
16463-16489 | 48.15 |
20 |
70.9 |
46.35 |
50 |
CoV2ID381 |
PCR primer forward |
WHCV-F1 |
CCAGGTAACAAACCAACCAACTT |
20 -42 | - |
CCAGGTAACAAACCAACCAACTT |
106-124 | 0 |
0 |
33.08 |
11.03 |
51 |
CoV2ID382 |
PCR primer reverse |
WHCV-R1 |
GGCAACCAACATAAGAGAACACAC |
1491 - 1514 | ORF1ab |
GTGTGTTCTCTTATGTTGGTTGCC |
2447-2462 | 0 |
0 |
28.27 |
9.42 |
51 |
CoV2ID383 |
PCR primer forward |
WHCV-F2 |
CAACCAAATGTGCCTTTCAACTC |
1201 - 1223 | ORF1ab |
CAACCAAATGTGCCTTTCAACTC |
2024-2042 | 10.53 |
20 |
48.12 |
26.22 |
51 |
CoV2ID384 |
PCR primer reverse |
WHCV-R2 |
CACAGTGTCATCACCAAAAGTAACCT |
2730 - 2755 | ORF1ab |
AGGTTACTTTTGGTGATGACACTGTG |
4109-4134 | 0 |
0 |
39.19 |
13.06 |
51 |
CoV2ID385 |
PCR primer forward |
WHCV-F3 |
TGTCACGCACTCAAAGGGATT |
2392 - 2412 | ORF1ab |
TGTCACGCACTCAAAGGGATT |
3723-3743 | 0 |
0 |
34.47 |
11.49 |
51 |
CoV2ID386 |
PCR primer reverse |
WHCV-R3 |
GACAGCTAAGTAGACATTTGTGCGAA |
3771 - 3796 | ORF1ab |
TTCGCACAAATGTCTACTTAGCTGTC |
5917-5942 | 7.69 |
0 |
48.17 |
18.62 |
51 |
CoV2ID387 |
PCR primer forward |
WHCV-F4 |
ATGCCATGCAAGTTGAATCTGAT |
3507 - 3529 | ORF1ab |
ATGCCATGCAAGTTGAATCTGAT |
5647-5669 | 8.7 |
20 |
43.69 |
24.13 |
51 |
CoV2ID388 |
PCR primer reverse |
WHCV-R4 |
TGCGTGTGGAGGTTAATGTTGT |
4989 - 5010 | ORF1ab |
ACAACATTAACCTCCACACGCA |
7313-7334 | 0 |
0 |
52.38 |
17.46 |
51 |
CoV2ID389 |
PCR primer forward |
WHCV-F5 |
GATCTCTCAAAGTGCCAGCTACAGT |
4665 - 4689 | ORF1ab |
GATCTCTCAAAGTGCCAGCTACAGT |
6989-7013 | 0 |
0 |
52.38 |
17.46 |
51 |
CoV2ID390 |
PCR primer reverse |
WHCV-R5 |
TTATAATCAATAGCCACCACATCACC |
6158 - 6183 | ORF1ab |
GGTGATGTGGTGGCTATTGATTATAA |
8652-8677 | 19.23 |
0 |
54.21 |
24.48 |
51 |
CoV2ID391 |
PCR primer forward |
WHCV-F6 |
AGAAACTTTGTATTGCATAGACGGTG |
5791 - 5816 | ORF1ab |
AGAAACTTTGTATTGCATAGACGGTG |
8128-8153 | 3.85 |
20 |
39.01 |
20.95 |
51 |
CoV2ID392 |
PCR primer reverse |
WHCV-R6 |
ACCAGTACAGTAAGAAGGCATGCC |
7037 - 7060 | ORF1ab |
GGCATGCCTTCTTACTGTACTGGT |
9807-9830 | 0 |
0 |
39.29 |
13.1 |
51 |
CoV2ID393 |
PCR primer forward |
WHCV-F7 |
GTTTAGCTGCTGTTAATAGTGTCCCTT |
6642 - 6668 | ORF1ab |
GTTTAGCTGCTGTTAATAGTGTCCCTT |
9294-9312 | 15.79 |
20 |
56.89 |
30.89 |
51 |
CoV2ID394 |
PCR primer reverse |
WHCV-R7 |
TGCAACTTCCGCACTATCACC |
8006 - 8026 | ORF1ab |
GGTGATAGTGCGGAAGTTGCA |
10942-10962 | 14.29 |
40 |
39.23 |
31.17 |
51 |
CoV2ID395 |
PCR primer forward |
WHCV-F8 |
TCCTACTGACCAGTCTTCTTACATCGT |
7711 - 7737 | ORF1ab |
TCCTACTGACCAGTCTTCTTACATCGT |
10587-10613 | 25.93 |
20 |
55.38 |
33.77 |
51 |
CoV2ID396 |
PCR primer reverse |
WHCV-R8 |
TTTCACAAGTGCCGTGCCTAC |
9216 - 9236 | ORF1ab |
GTAGGCACGGCACTTGTGAAA |
12256-12276 | 28.57 |
40 |
56.69 |
41.75 |
51 |
CoV2ID397 |
PCR primer forward |
WHCV-F9 |
GGTTTGCCTGGCACGATATTAC |
8867 - 8888 | ORF1ab |
GGTTTGCCTGGCACGATATTAC |
11891-11915 | 12 |
0 |
46.48 |
19.49 |
51 |
CoV2ID398 |
PCR primer reverse |
WHCV-R9 |
ACTTAGGTGTCTTAGGATTGGCTGTAT |
10329 - 10355 | ORF1ab |
ATACAGCCAATCCTAAGACACCTAAGT |
13418-13444 | 22.22 |
0 |
52.38 |
24.87 |
51 |
CoV2ID399 |
PCR primer forward |
WHCV-F10 |
TTGTCATCTCGCAAAGGCTCT |
9958 - 9978 | ORF1ab |
TTGTCATCTCGCAAAGGCTCT |
13035-13055 | 42.86 |
60 |
68.48 |
57.11 |
51 |
CoV2ID400 |
PCR primer reverse |
WHCV-R10 |
GAGATTATAAGAGCCCACATGGAAA |
11457 - 11481 | ORF1ab |
TTTCCATGTGGGCTCTTATAATCTC |
14631-14655 | 8 |
0 |
40.95 |
16.32 |
51 |
CoV2ID401 |
PCR primer forward |
WHCV-F11 |
GCTATGGGTATTATTGCTATGTCTGCT |
11108 - 11134 | ORF1ab |
GCTATGGGTATTATTGCTATGTCTGCT |
14215-14240 | 11.54 |
20 |
44.69 |
25.41 |
51 |
CoV2ID402 |
PCR primer reverse |
WHCV-R11 |
TGGATTTCCCACAATGCTGAT |
12541 - 12561 | ORF1ab |
ATCAGCATTGTGGGAAATCCA |
15761-15781 | 23.81 |
0 |
55.1 |
26.3 |
51 |
CoV2ID403 |
PCR primer forward |
WHCV-F12 |
CTGATCAAGCTATGACCCAAATGT |
12279 - 12302 | ORF1ab |
CTGATCAAGCTATGACCCAAATGT |
15496-15519 | 41.67 |
80 |
70.24 |
63.97 |
51 |
CoV2ID404 |
PCR primer reverse |
WHCV-R12 |
GCAACAGCTGGACAATCCTTAAGT |
13707 - 13730 | ORF1ab |
ACTTAAGGATTGTCCAGCTGTTGC |
16957-16980 | 25 |
0 |
60.71 |
28.57 |
51 |
CoV2ID405 |
PCR primer forward |
WHCV-F13 |
TCTGCGGTATGTGGAAAGGTTAT |
13380 - 13402 | ORF1ab |
TCTGCGGTATGTGGAAAGGTTAT |
16607-16629 | 26.09 |
0 |
60.25 |
28.78 |
51 |
CoV2ID406 |
PCR primer reverse |
WHCV-R13 |
GTCAGCAGCATACACAAGTAATTCCT |
14546 - 14571 | ORF1ab |
AGGAATTACTTGTGTATGCTGCTGAC |
17803-17828 | 38.46 |
40 |
61.54 |
46.67 |
51 |
CoV2ID407 |
PCR primer forward |
WHCV-F14 |
AGGGCTTTAACTGCAGAGTCACAT |
14185 - 14208 | ORF1ab |
AGGGCTTTAACTGCAGAGTCACAT |
17439-17462 | 16.67 |
20 |
55.16 |
30.61 |
51 |
CoV2ID408 |
PCR primer reverse |
WHCV-R14 |
GCGGACATACTTATCGGCAATT |
15582 - 15603 | ORF1ab |
AATTGCCGATAAGTATGTCCGC |
18851-18872 | 13.64 |
40 |
44.37 |
32.67 |
51 |
CoV2ID409 |
PCR primer forward |
WHCV-F15 |
TCAATAGCCGCCACTAGAGGAG |
15172 - 15193 | ORF1ab |
TCAATAGCCGCCACTAGAGGAG |
18429-18450 | 31.82 |
20 |
62.55 |
38.12 |
51 |
CoV2ID410 |
PCR primer reverse |
WHCV-R15 |
TCACCAGCATTTGTCCAGTCAC |
16571 - 16592 | ORF1ab |
GTGACTGGACAAATGCTGGTGA |
19840-19861 | 40.91 |
40 |
69.05 |
49.99 |
51 |
CoV2ID411 |
PCR primer forward |
WHCV-F16 |
TTGGGGCTTGTGTTCTTTGC |
16241 - 16260 | ORF1ab |
TTGGGGCTTGTGTTCTTTGC |
19510-19529 | 45 |
60 |
69.52 |
58.17 |
51 |
CoV2ID412 |
PCR primer reverse |
WHCV-R16 |
CAAGCAGGGTTACGTGTAAGGAAT |
17730 - 17753 | ORF1ab |
ATTCCTTACACGTAACCCTGCTTG |
21002-21025 | 33.33 |
40 |
56.55 |
43.29 |
51 |
CoV2ID413 |
PCR primer forward |
WHCV-F17 |
TGTCAATGCCAGATTACGTGCT |
17394 - 17415 | ORF1ab |
TGTCAATGCCAGATTACGTGCT |
20666-20687 | 27.27 |
20 |
60.61 |
35.96 |
51 |
CoV2ID414 |
PCR primer reverse |
WHCV-R17 |
TAACAAAGCACTCGTGGACAGC |
18880 - 18901 | ORF1ab |
GCTGTCCACGAGTGCTTTGTTA |
22159-22180 | 40.91 |
60 |
69.48 |
56.8 |
51 |
CoV2ID415 |
PCR primer forward |
WHCV-F18 |
TATGGGCACATGGCTTTGAGT |
18593 - 18613 | ORF1ab |
TATGGGCACATGGCTTTGAGT |
21872-21892 | 38.1 |
40 |
65.99 |
48.03 |
51 |
CoV2ID416 |
PCR primer reverse |
WHCV-R18 |
TAAGAACACCATTACGGGCATTT |
20025 - 20047 | ORF1ab |
AAATGCCCGTAATGGTGTTCTTA |
23316-23338 | 21.74 |
0 |
55.28 |
25.67 |
51 |
CoV2ID417 |
PCR primer forward |
WHCV-F19 |
TTGATGGACAACAGGGTGAAGTAC |
19664 - 19687 | ORF1ab |
TTGATGGACAACAGGGTGAAGTAC |
22955-22978 | 41.67 |
40 |
66.47 |
49.38 |
51 |
CoV2ID418 |
PCR primer reverse |
WHCV-R19 |
CGAAGTGTCCCATGAGCTTATAAA |
21197 - 21220 | ORF1ab |
TTTATAAGCTCATGGGACACTTCG |
24623-24646 | 37.5 |
80 |
64.88 |
60.79 |
51 |
CoV2ID419 |
PCR primer forward |
WHCV-F20 |
AGGAGTTGCACCAGGTACAGCT |
20886 - 20907 | ORF1ab |
AGGAGTTGCACCAGGTACAGCT |
24312-24333 | 45.45 |
40 |
74.03 |
53.16 |
51 |
CoV2ID420 |
PCR primer reverse |
WHCV-R20 |
ACCCACATAATAAGCTGCAGCAC |
22344 - 22366 | S |
GTGCTGCAGCTTATTATGTGGGT |
27827-27841 | 13.33 |
40 |
50.16 |
34.5 |
51 |
CoV2ID421 |
PCR primer forward |
WHCV-F21 |
CTATTAATTTAGTGCGTGATCTCCCTC |
22188 - 22214 | S |
CTATTAATTTAGTGCGTGATCTCCCTC |
27311-27328 | 5.56 |
0 |
44.71 |
16.76 |
51 |
CoV2ID422 |
PCR primer reverse |
WHCV-R21 |
AAATTTGTGGGTATGGCAATAGAGTTA |
23689 - 23715 | S |
TAACTCTATTGCCATACCCACAAATTT |
29922-29941 | 40 |
20 |
62.86 |
40.95 |
51 |
CoV2ID423 |
PCR primer forward |
WHCV-F22 |
ACTTACTCCTACTTGGCGTGTTTATTC |
23446 - 23472 | S |
ACTTACTCCTACTTGGCGTGTTTATTC |
29538-29561 | 4.17 |
20 |
42.46 |
22.21 |
51 |
CoV2ID424 |
PCR primer reverse |
WHCV-R22 |
GCATTAATGCCAGAGATGTCACC |
25061 - 25083 | S |
GGTGACATCTCTGGCATTAATGC |
31455-31475 | 19.05 |
40 |
50.11 |
36.39 |
51 |
CoV2ID425 |
PCR primer forward |
WHCV-F23 |
CTATCATCTTATGTCCTTCCCTCAGTC |
24700 - 24726 | S |
CTATCATCTTATGTCCTTCCCTCAGTC |
31016-31042 | 25.93 |
0 |
58.02 |
27.98 |
51 |
CoV2ID426 |
PCR primer reverse |
WHCV-R23 |
TAGTCGTCGTCGGTTCATCATAAAT |
26179 - 26203 | ORF3a |
ATTTATGATGAACCGACGACGACTA |
33787-33811 | 4 |
0 |
41.52 |
15.17 |
51 |
CoV2ID427 |
PCR primer forward |
WHCV-F24 |
TACTTCAGGTGATGGCACAACAA |
25899 - 25921 | ORF3a |
TACTTCAGGTGATGGCACAACAA |
33422-33444 | 4.35 |
0 |
36.65 |
13.67 |
51 |
CoV2ID428 |
PCR primer reverse |
WHCV-R24 |
AAGCTCACAAGTAGCGAGTGTTATCA |
27419 - 27444 | ORF7a |
TGATAACACTCGCTACTTGTGAGCTT |
35158-35183 | 0 |
0 |
49.45 |
16.48 |
51 |
CoV2ID429 |
PCR primer forward |
WHCV-F25 |
CGTGTAGCAGGTGACTCAGGTTT |
27078 - 27100 | M |
CGTGTAGCAGGTGACTCAGGTTT |
34798-34820 | 8.7 |
40 |
45.96 |
31.55 |
51 |
CoV2ID430 |
PCR primer reverse |
WHCV-R25 |
TACCGTCACCACCACGAATTC |
28551 - 28571 | N |
GAATTCGTGGTGGTGACGGTA |
36309-36329 | 0 |
0 |
52.38 |
17.46 |
51 |
CoV2ID431 |
PCR primer forward |
WHCV-F26 |
GGACCCCAAAATCAGCGAAAT |
28286 - 28306 | N |
GGACCCCAAAATCAGCGAAAT |
36044-36064 | 0 |
0 |
52.38 |
17.46 |
51 |
CoV2ID432 |
PCR primer reverse |
WHCV-R26 |
AAAATCACATGGGGATAGCACTACT |
29824 - 29848 | - |
AGTAGTGCTATCCCCATGTGATTTT |
37918-37942 | 8 |
20 |
53.52 |
27.17 |
51 |
CoV2ID433 |
PCR primer forward |
S1423F |
GCCGGTAGCACACCTTGTAA |
22985 - 23004 | S |
GCCGGTAGCACACCTTGTAA |
28856-28873 | 0 |
0 |
34.13 |
11.38 |
51 |
CoV2ID434 |
PCR primer reverse |
S1736R2 |
GGATCACGGACAGCATCAGT |
23279 - 23298 | S |
ACTGATGCTGTCCGTGATCC |
29371-29390 | 0 |
0 |
42.62 |
14.21 |
51 |
CoV2ID435 |
PCR primer forward |
S2620F |
ACTTCTGCACTGTTAGCGGG |
24182 - 24201 | S |
ACTTCTGCACTGTTAGCGGG |
30450-30469 | 15 |
0 |
48.81 |
21.27 |
51 |
CoV2ID436 |
PCR primer reverse |
S3174R2 |
ATGAGGTGCTGACTGAGGGA |
24717 - 24736 | S |
TCCCTCAGTCAGCACCTCAT |
31033-31052 | 30 |
20 |
59.29 |
36.43 |
51 |
CoV2ID437 |
PCR primer reverse |
S3240R1 |
GGCAGGAGCAGTTGTGAAGT |
24783 - 24802 | S |
ACTTCACAACTGCTCCTGCC |
31099-31118 | 5 |
0 |
45.71 |
16.9 |
51 |
CoV2ID438 |
RACE primer |
5-GSP |
CCACATGAGGGACAAGGACACCAAGTG |
573 - 599 | ORF1ab |
CACTTGGTGTCCTTGTCCCTCATGTGG |
1012-1038 | 0 |
0 |
40.39 |
13.46 |
51 |
CoV2ID439 |
RACE primer |
5-GSPn |
CATGACCATGAGGTGCAGTTCGAGC |
491 - 515 | ORF1ab |
GCTCGAACTGCACCTCATGGTCATG |
929-953 | 8 |
20 |
44.38 |
24.13 |
51 |
CoV2ID440 |
RACE primer |
3-GSP |
TGTCGCGCATTGGCATGGAAGTCACACC |
29223 - 29250 | N |
TGTCGCGCATTGGCATGGAAGTCACACC |
37091-37118 | 3.57 |
0 |
37.24 |
13.6 |
51 |
CoV2ID441 |
RACE primer |
3-GSPn |
CTCAAGCCTTACCGCAGAGACAGAAG |
29409 - 29434 | N |
CTCAAGCCTTACCGCAGAGACAGAAG |
37339-37364 | 3.85 |
20 |
37.91 |
20.59 |
51 |
CoV2ID442 |
Target Generation primer |
nsp10-Std-T7-F |
TAATACGACTCACTATAGGGGTGGGGGACAACCAATCACT |
13122 - 13141 | ORF1ab |
GTGGGGGACAACCAATCACT |
16349-16368 | 30 |
20 |
55.95 |
35.32 |
52 |
CoV2ID443 |
Target Generation primer |
nsp10-Std-R |
AGACGAGGTCTGCCATTGTG |
13806 - 13825 | ORF1ab |
CACAATGGCAGACCTCGTCT |
17060-17079 | 45 |
20 |
68.57 |
44.52 |
52 |
CoV2ID444 |
Target Generation primer |
RdRp-Std-T7-F |
TAATACGACTCACTATAGGGAATAGAGCTCGCACCGTAGC |
15093 - 15113 | ORF1ab |
GAATAGAGCTCGCACCGTAGC |
18350-18370 | 47.62 |
60 |
74.38 |
60.67 |
52 |
CoV2ID445 |
Target Generation primer |
RdRp-Std-R |
CATCTACAAAACAGCCGGCC |
15957 - 15976 | ORF1ab |
GGCCGGCTGTTTTGTAGATG |
19226-19245 | 65 |
80 |
80.48 |
75.16 |
52 |
CoV2ID446 |
Target Generation primer |
nsp14-Std-T7-F |
TAATACGACTCACTATAGGGTAGTGCTAAACCACCGCCTG |
18447 - 18466 | ORF1ab |
TAGTGCTAAACCACCGCCTG |
21726-21745 | 45 |
60 |
66.67 |
57.22 |
52 |
CoV2ID447 |
Target Generation primer |
nsp14-Std-R |
AACTGCCACCATCACAACCA |
19275 - 19294 | ORF1ab |
TGGTTGTGATGGTGGCAGTT |
22557-22576 | 40 |
0 |
72.86 |
37.62 |
52 |
CoV2ID448 |
Target Generation primer |
E-Std-T7-F |
TAATACGACTCACTATAGGGGCGTGCCTTTGTAAGCACAA |
26207 - 26226 | E |
GCGTGCCTTTGTAAGCACAA |
33841-33857 | 0 |
0 |
36.69 |
12.23 |
52 |
CoV2ID449 |
Target Generation primer |
E-Std-R |
GGCAGGTCCTTGATGTCACA |
26997 - 27016 | E |
TGTGACATCAAGGACCTGCC |
34717-34732 | 18.75 |
60 |
47.62 |
42.12 |
52 |
CoV2ID450 |
Target Generation primer |
N-Std-T7-F |
TAATACGACTCACTATAGGGGAATTGTGCGTGGATGAGGC |
28068 - 28087 | N |
GAATTGTGCGTGGATGAGGC |
35826-35845 | 10 |
20 |
46.19 |
25.4 |
52 |
CoV2ID451 |
Target Generation primer |
N-Std-R |
TGTCTCTGCGGTAAGGCTTG |
29411 - 29430 | N |
CAAGCCTTACCGCAGAGACA |
37341-37360 | 0 |
0 |
31.43 |
10.48 |
52 |
CoV2ID452 |
LAMP outer forward primer |
Rohaim_ORF1ab_F3 |
CCGCCACTAGAGGAGCTACT |
15179 - 15198 | ORF1ab |
CCGCCACTAGAGGAGCTACT |
18436-18455 | 30 |
40 |
61.9 |
43.97 |
53 |
CoV2ID453 |
LAMP outer backward primer |
Rohaim_ORF1ab_B3 |
TGTTGTAGCTTGTCACAC |
15373 - 15390 | ORF1ab |
TGTTGTAGCTTGTCACAC |
18630-18647 | 38.89 |
100 |
59.52 |
66.14 |
53 |
CoV2ID454 |
LAMP forward inner primer |
Rohaim_ORF1ab_FIP |
ATTGGAACAAGCAAATTCTATTATAGTGATGTAGAAAACCCTCACC |
15255 - 15280 | ORF1ab |
TTATAGTGATGTAGAAAACCCTCACC |
18512-18537 | 34.62 |
0 |
62.45 |
32.36 |
53 |
CoV2ID455 |
LAMP backward inner primer |
Rohaim_ORF1ab_BIP |
TATGGGTTGGGATTATCCTAAATGTGCCTCACTTGTTCTTGCTC |
15340 - 15358 | ORF1ab |
GCCTCACTTGTTCTTGCTC |
18539-18564 | 73.08 |
80 |
90.29 |
81.12 |
53 |
CoV2ID456 |
LAMP loop forward primer |
Rohaim_ORF1ab_LF |
GGTTGGCACAACATGTTAAAAAC |
15229 - 15251 | ORF1ab |
GGTTGGCACAACATGTTAAAAAC |
18486-18508 | 43.48 |
0 |
68.94 |
37.47 |
53 |
CoV2ID457 |
LAMP loop backward primer |
Rohaim_ORF1ab_LB |
AGCCATGCCTAACATGCTTAG |
15312 - 15332 | ORF1ab |
AGCCATGCCTAACATGCTTAG |
18569-18589 | 42.86 |
40 |
71.66 |
51.51 |
53 |
CoV2ID458 |
PCR primer forward |
Rohaim_RdRP_F |
GTGAAATGGTCATGTGTGGCGG |
15431 - 15452 | ORF1ab |
GTGAAATGGTCATGTGTGGCGG |
18688-18709 | 31.82 |
40 |
65.37 |
45.73 |
53 |
CoV2ID459 |
PCR primer reverse |
Rohaim_RdRP_R |
TATGCTAATAGTGTTTTTAACATTTG |
15505 - 15530 | ORF1ab |
TATGCTAATAGTGTTTTTAACATTTG |
18762-18787 | 57.69 |
60 |
80.22 |
65.97 |
53 |
CoV2ID460 |
RPA forward primer |
S-RPA-Forward_v1 |
GAAATTAATACGACTCACTATAGGGAGGTTTCAAACTTTACTTGCTT TACATAGA |
22271 - 22300 | S |
AGGTTTCAAACTTTACTTGCTTTACATAGA |
27466-27487 | 13.64 |
20 |
53.46 |
29.03 |
54 |
CoV2ID461 |
RPA forward primer |
Orf1ab-RPA-Forward_v1 |
GAAATTAATACGACTCACTATAGGGCGAAGTTGTAGGAGACATTAT ACTTAAACC |
6472 - 6501 | ORF1ab |
CGAAGTTGTAGGAGACATTATACTTAAACC |
9035-9064 | 10 |
0 |
40 |
16.67 |
54 |
CoV2ID462 |
sgRNA |
nCoV-RdRp-sgRNA R |
ATGTGTGGCGGTTCACTATATGTatctacacttagtagaaatta |
15442 - 15464 | RdRp |
ATGTGTGGCGGTTCACTATATGT |
18699-18721 | 26.09 |
60 |
62.11 |
49.4 |
55 |
CoV2ID463 |
sgRNA |
nCoV-ORF1b-sgRNA R |
TGGTTGCTTTGTAGGTTACCTGTatctacacttagtagaaatta |
18787 - 18809 | ORF1b |
ACAGGTAACCTACAAAGCAACCA |
22065-22088 | 33.33 |
80 |
59.92 |
57.75 |
55 |
CoV2ID464 |
sgRNA |
nCOV-ORF1ab-sgRNA R |
GTCTGTACCGTCTGCGGTATGTGatctacacttagtagaaatta |
13370 - 13392 | ORF1ab |
GTCTGTACCGTCTGCGGTATGTG |
16597-16619 | 39.13 |
40 |
69.98 |
49.7 |
55 |
CoV2ID465 |
PCR primer forward |
SARS-CoV-2_IBS_RdRP1_F |
CATGTGTGGCGGTTCACTAT |
15441 - 15460 | RdRp |
CATGTGTGGCGGTTCACTAT |
18698-18717 | 20 |
20 |
57.86 |
32.62 |
56 |
CoV2ID466 |
PCR primer reverse |
SARS-CoV-2_IBS_RdRP1_R |
TGCATTAACATTGGCCGTGA |
15539 - 15558 | RdRp |
TCACGGCCAATGTTAATGCA |
18796-18815 | 20 |
0 |
57.62 |
25.87 |
56 |
CoV2ID467 |
PCR primer forward |
SARS-CoV-2_IBS_S1_F |
CTACATGCACCAGCAACTGT |
23114 - 23133 | S |
CTACATGCACCAGCAACTGT |
29121-29136 | 0 |
0 |
49.11 |
16.37 |
56 |
CoV2ID468 |
PCR primer reverse |
SARS-CoV-2_IBS_S1_R |
CACCTGTGCCTGTTAAACCA |
23194 - 23213 | S |
TGGTTTAACAGGCACAGGTG |
29271-29290 | 35 |
60 |
61.43 |
52.14 |
56 |
CoV2ID469 |
PCR primer forward |
SARS-CoV-2_IBS_E1_F |
TTCGGAAGAGACAGGTACGTT |
26259 - 26279 | E |
TTCGGAAGAGACAGGTACGTT |
33921-33941 | 0 |
0 |
27.66 |
9.22 |
56 |
CoV2ID470 |
PCR primer reverse |
SARS-CoV-2_IBS_E1_R |
CACACAATCGATGCGCAGTA |
26349 - 26365 | E |
TGCGCTTCGATTGTGTG |
34008-34027 | 25 |
0 |
57.14 |
27.38 |
56 |
CoV2ID471 |
PCR primer forward |
SARS-CoV-2_IBS_N1_F |
CAATGCTGCAATCGTGCTAC |
28732 - 28751 | N |
CAATGCTGCAATCGTGCTAC |
36490-36509 | 0 |
0 |
44.76 |
14.92 |
56 |
CoV2ID472 |
PCR primer reverse |
SARS-CoV-2_IBS_N1_R |
GTTGCGACTACGTGATGAGG |
28830 - 28849 | N |
CCTCATCACGTAGTCGCAAC |
36617-36628 | 16.67 |
20 |
52.38 |
29.68 |
56 |
CoV2ID473 |
PCR primer forward |
SARS-CoV-2_IBS_RdRP2_F |
AGAATAGAGCTCGCACCGTA |
15092 - 15111 | RdRp |
AGAATAGAGCTCGCACCGTA |
18349-18368 | 50 |
60 |
75.48 |
61.83 |
56 |
CoV2ID474 |
PCR primer reverse |
SARS-CoV-2_IBS_RdRP2_R |
CTCCTCTAGTGGCGGCTATT |
15174 -15193 | RdRp |
AATAGCCGCCACTAGAGGAG |
18431-18450 | 35 |
60 |
63.57 |
52.86 |
56 |
CoV2ID475 |
PCR primer forward |
SARS-CoV-2_IBS_RdRP3_F |
TCTGTGATGCCATGCGAAAT |
14015 - 14034 | RdRp |
TCTGTGATGCCATGCGAAAT |
17269-17288 | 20 |
0 |
52.86 |
24.29 |
56 |
CoV2ID476 |
PCR primer reverse |
SARS-CoV-2_IBS_RdRP3_R |
ACTACCTGGCGTGGTTTGTA |
14108 - 14127 | RdRp |
TACAAACCACGCCAGGTAGT |
17362-17381 | 15 |
20 |
48.33 |
27.78 |
56 |
CoV2ID477 |
PCR primer forward |
SARS-CoV-2_IBS_S2_F |
GCTGGTGCTGCAGCTTATTA |
22340 - 22359 | S |
GCTGGTGCTGCAGCTTATTA |
27669-27678 | 10 |
0 |
46.67 |
18.89 |
56 |
CoV2ID478 |
PCR primer reverse |
SARS-CoV-2_IBS_S2_R |
AGGGTCAAGTGCACAGTCTA |
22428 - 22447 | S |
TAGACTGTGCACTTGACCCT |
28062-28075 | 7.14 |
0 |
53.06 |
20.07 |
56 |
CoV2ID479 |
PCR primer forward |
SARS-CoV-2_IBS_E2_F |
TTCGGAAGAGACAGGTACGTTA |
26259 - 26280 | E |
TTCGGAAGAGACAGGTACGTTA |
33921-33942 | 0 |
0 |
26.84 |
8.95 |
56 |
CoV2ID480 |
PCR primer reverse |
SARS-CoV-2_IBS_E2_R |
AGCAGTACGCACACAATCG |
26356 - 26374 | E |
CGATTGTGTGCGTACTGCT |
34018-34036 | 21.05 |
20 |
53.38 |
31.48 |
56 |
CoV2ID481 |
PCR primer forward |
SARS-CoV-2_IBS_N2_F |
GCTGCAATCGTGCTACAACT |
28736 - 28755 | N |
GCTGCAATCGTGCTACAACT |
36494-36513 | 0 |
0 |
42.86 |
14.29 |
56 |
CoV2ID482 |
PCR primer reverse |
SARS-CoV-2_IBS_N2_R |
TGAACTGTTGCGACTACGTG |
28836 - 28855 | N |
CACGTAGTCGCAACAGTTCA |
36617-36634 | 22.22 |
20 |
56.61 |
32.94 |
56 |
CoV2ID483 |
PCR primer forward |
Yip_RdRp_OTter_F |
AGGTATTGGGAACCTGAGTTTTATGAGGCTATGTACACAC |
16180 - 16219 | RdRp |
AGGTATTGGGAACCTGAGTTTTATGAGGCTATGTACACAC |
19449-19488 | 25 |
0 |
60 |
28.33 |
57 |
CoV2ID484 |
PCR primer reverse |
Yip_RdRp_OTter_R |
ACCTGGAGCATTGCAAACATACGGATTAACAGACAAGAC |
16360 - 16398 | RdRp |
GTCTTGTCTGTTAATCCGTATGTTTGCAATGCTCCAGGT |
19629-19667 | 43.59 |
60 |
71.92 |
58.5 |
57 |
CoV2ID485 |
PCR primer forward |
Yip_RdRp_Inner_F |
CGCATACAGTCTTRCAGGCT |
16220 - 16239 | RdRp |
CGCATACAGTCTTACAGGCT |
19489-19508 | 30 |
40 |
60.48 |
43.49 |
57 |
CoV2ID486 |
PCR primer reverse |
Yip_RdRp_Inner_R |
GTGTGATGTTGAWATGACATGGTC |
16330 - 16352 | RdRp |
GACCATGTCATATCAACATCACA |
19599-19621 | 52.17 |
80 |
69.36 |
67.18 |
57 |
CoV2ID487 |
PCR Probe |
Yip_RdRp_probe |
TTAAGATGTGGTGCTTGCATACGTAGAC |
16276 - 16303 | RdRp |
TTAAGATGTGGTGCTTGCATACGTAGAC |
19545-19572 | 42.86 |
40 |
69.05 |
50.64 |
57 |
CoV2ID488 |
PCR primer forward |
Yip_RdRp_OTter_F |
AATTGCACAATTTGCCCCCAGCGCTTCA |
29182 - 29209 | N |
AATTGCACAATTTGCCCCCAGCGCTTCA |
37050-37077 | 28.57 |
0 |
58.33 |
28.97 |
57 |
CoV2ID489 |
PCR primer reverse |
Yip_RdRp_OTter_R |
TGCGTCAATATGCTTATTCAGCAAAATGACTTGATCTTTGA |
29310 - 29350 | N |
TCAAAGATCAAGTCATTTTGCTGAATAAGCATATTGACGCA |
37231-37271 | 9.76 |
0 |
51.57 |
20.44 |
57 |
CoV2ID490 |
PCR primer forward |
Yip_RdRp_Inner_F |
GCGTTCTTCGGAATGTCG |
29210 - 29227 | N |
GCGTTCTTCGGAATGTCG |
37078-37095 | 22.22 |
0 |
55.29 |
25.84 |
57 |
CoV2ID491 |
PCR primer reverse |
Yip_RdRp_Inner_R |
TTGGATCTTTGTCATCCAATTTG |
29284 - 29306 | N |
CAAATTGGATGACAAAGATCCAA |
37215-37227 | 30.77 |
40 |
53.85 |
41.54 |
57 |
CoV2ID492 |
PCR Probe |
Yip_RdRp_probe |
AACGTGGTTGACCTACACAGST |
29257 - 29278 | N |
AACGTGGTTGACCTACACAGGT |
37153-37172 | 10 |
20 |
49.76 |
26.59 |
57 |