CoV2ID001
Raw data
Min-max
|
PCR primer forward |
China_CDC_Meta1_F |
CCCTGTGGGTTTTACACTTAA |
13342-13362 | ORF1ab |
CCCTGTGGGTTTTACACTTAA |
4349-4358 | 100.00 |
100.00 |
100.00 |
1 |
CoV2ID002
Raw data
Min-max
|
PCR primer reverse |
China_CDC_Meta1_R |
ACGATTGTGCATCAGCTGA |
13442-13460 | ORF1ab |
TCAGCTGATGCACAATCGT |
13492-13510 | 89.47 |
80.00 |
99.80 |
1 |
CoV2ID003
Raw data
Min-max
|
Probe |
China_CDC_Meta1_P |
CCGTCTGCGGTATGTGGAAAGGTTATGG |
13377-13404 | ORF1ab |
CCGTCTGCGGTATGTGGAAAGGTTATGG |
13427-13454 | 92.86 |
100.00 |
99.87 |
1 |
CoV2ID004
Raw data
Min-max
|
PCR primer forward |
China_CDC_Meta2_F |
GGGGAACTTCTCCTGCTAGAAT |
28881-28902 | N |
GGGGAACTTCTCCTGCTAGAAT |
28952-28973 | 100.00 |
100.00 |
100.00 |
1 |
CoV2ID005
Raw data
Min-max
|
PCR primer reverse |
China_CDC_Meta2_R |
CAGACATTTTGCTCTCAAGCTG |
28958-28979 | N |
CAGCTTGAGAGCAAAATGTCTG |
29029-29050 | 100.00 |
100.00 |
100.00 |
1 |
CoV2ID006
Raw data
Min-max
|
Probe |
China_CDC_Meta2_P |
TTGCTGCTGCTTGACAGATT |
28934-28953 | N |
TTGCTGCTGCTTGACAGATT |
29005-29024 | 100.00 |
100.00 |
100.00 |
1 |
CoV2ID007
Raw data
Min-max
|
PCR primer forward |
Charite_RdRP_SARSr-F2 |
GTGARATGGTCATGTGTGGCGG |
15431-15452 | ORF1ab |
GTGAAATGGTCATGTGTGGCGG |
15481-15502 | 100.00 |
100.00 |
100.00 |
2 |
CoV2ID008
Raw data
Min-max
|
PCR primer reverse |
Charite_RdRP_SARSr-R1 |
CARATGTTAAASACACTATTAGCATA |
15505-15530 | ORF1ab |
TATGCTAATAGTGTTTTTAACATTTG |
15555-15580 | 100.00 |
100.00 |
100.00 |
2 |
CoV2ID009
Raw data
Min-max
|
Probe |
Charite_RdRP_SARSr-P2 |
CAGGTGGAACCTCATCAGGAGATGC |
15470-15494 | ORF1ab |
CAGGTGGAACCTCATCAGGAGATGC |
15520-15544 | 100.00 |
100.00 |
100.00 |
2 |
CoV2ID010
Raw data
Min-max
|
Probe |
Charite_RdRP_SARSr-P1 |
CCAGGTGGWACRTCATCMGGTGATGC |
15469-15494 | ORF1ab |
CCAGGTGGAACCTCATCAGGAGATGC |
15519-15544 | 100.00 |
100.00 |
100.00 |
2 |
CoV2ID011
Raw data
Min-max
|
PCR primer forward |
Charite_E_Sarbeco_F1 |
ACAGGTACGTTAATAGTTAATAGCGT |
26269-26294 | E |
ACAGGTACGTTAATAGTTAATAGCGT |
26340-26365 | 100.00 |
100.00 |
100.00 |
2 |
CoV2ID012
Raw data
Min-max
|
PCR primer reverse |
Charite_E_Sarbeco_R2 |
ATATTGCAGCAGTACGCACACA |
26360-26381 | E |
TGTGTGCGTACTGCTGCAATAT |
26431-26452 | 100.00 |
100.00 |
100.00 |
2 |
CoV2ID013
Raw data
Min-max
|
Probe |
Charite_E_Sarbeco_P1 |
ACACTAGCCATCCTTACTGCGCTTCG |
26332-26357 | E |
ACACTAGCCATCCTTACTGCGCTTCG |
26403-26428 | 96.15 |
80.00 |
99.93 |
2 |
CoV2ID014
Raw data
Min-max
|
PCR primer forward |
HKU-ORF1b-nsp14F |
TGGGGYTTTACRGGTAACCT |
18778-18797 | ORF1ab |
TGGGGTTTTACAGGTAACCT |
18841-18860 | 0.00 |
0.00 |
98.11 |
3 |
CoV2ID015
Raw data
Min-max
|
PCR primer reverse |
HKU- ORF1b-nsp14R |
AACRCGCTTAACAAAGCACTC |
18889-18909 | ORF1b-nsp15 |
GAGTGCTTTGTTAAGCGTGTT |
18952-18972 | 0.00 |
0.00 |
98.11 |
3 |
CoV2ID016
Raw data
Min-max
|
Probe |
HKU-ORF1b-nsp141P |
TAGTTGTGATGCWATCATGACTAG |
18849-18872 | ORF1b-nsp16 |
TAGTTGTGATGCAATCATGACTAG |
18912-18935 | 0.00 |
0.00 |
98.11 |
3 |
CoV2ID017
Raw data
Min-max
|
PCR primer forward |
HKU-NF |
TAATCAGACAAGGAACTGATTA |
29145-29166 | N |
TAATCAGACAAGGAACTGATTA |
29216-29237 | 100.00 |
100.00 |
100.00 |
3 |
CoV2ID018
Raw data
Min-max
|
PCR primer reverse |
HKU-NR |
CGAAGGTGTGACTTCCATG |
29236-29254 | N |
CATGGAAGTCACACCTTCG |
29307-29325 | 100.00 |
100.00 |
100.00 |
3 |
CoV2ID019
Raw data
Min-max
|
Probe |
HKU-NP |
GCAAATTGTGCAATTTGCGG |
29177-29196 | N |
CCGCAAATTGCACAATTTGC |
29248-29267 | 100.00 |
100.00 |
100.00 |
3 |
CoV2ID020
Raw data
Min-max
|
PCR primer forward |
WH-NIC N-F |
CGTTTGGTGGACCCTCAGAT |
28320-28339 | N |
CGTTTGGTGGACCCTCAGAT |
28391-28410 | 100.00 |
100.00 |
100.00 |
4 |
CoV2ID021
Raw data
Min-max
|
PCR primer reverse |
WH-NIC N-R |
CCCCACTGCGTTCTCCATT |
28358-28376 | N |
AATGGAGAACGCAGTGGGG |
28429-28447 | 94.74 |
100.00 |
99.90 |
4 |
CoV2ID022
Raw data
Min-max
|
Probe |
WH-NIC N-P |
CAACTGGCAGTAACCA |
28341-28356 | N |
CAACTGGCAGTAACCA |
28412-28427 | 100.00 |
100.00 |
100.00 |
4 |
CoV2ID023
Raw data
Min-max
|
PCR primer forward |
NIID_WH-1_F501 |
TTCGGATGCTCGAACTGCACC |
484-504 | ORF1ab |
TTCGGATGCTCGAACTGCACC |
496-516 | 0.00 |
0.00 |
97.94 |
5 |
CoV2ID024
Raw data
Min-max
|
PCR primer reverse |
NIID_WH-1_R913 |
CTTTACCAGCACGTGCTAGAAGG |
874-896 | ORF1ab |
CCTTCTAGCACGTGCTGGTAAAG |
886-908 | 100.00 |
100.00 |
100.00 |
5 |
CoV2ID025
Raw data
Min-max
|
PCR primer forward |
NIID_WH-1_F509 |
CTCGAACTGCACCTCATGG |
492-510 | ORF1ab |
CTCGAACTGCACCTCATGG |
504-522 | 0.00 |
0.00 |
97.53 |
5 |
CoV2ID026
Raw data
Min-max
|
PCR primer reverse |
NIID_WH-1_R854 |
CAGAAGTTGTTATCGACATAGC |
816-837 | ORF1ab |
GCTATGTCGATAACAACTTCTG |
828-849 | 100.00 |
100.00 |
100.00 |
5 |
CoV2ID027
Raw data
Min-max
|
PCR primer forward |
NIID_WH-1_Seq_F519 |
ACCTCATGGTCATGTTATGG |
502-521 | ORF1ab |
ACCTCATGGTCATGTTATGG |
514-533 | 0.00 |
0.00 |
95.46 |
5 |
CoV2ID028
Raw data
Min-max
|
PCR primer reverse |
NIID_WH-1_Seq_R840 |
GACATAGCGAGTGTATGCC |
805-823 | ORF1ab |
GGCATACACTCGCTATGTC |
817-835 | 100.00 |
100.00 |
100.00 |
5 |
CoV2ID029
Raw data
Min-max
|
PCR primer forward |
WuhanCoV-spk1-f |
TTGGCAAAATTCAAGACTCACTTT |
24354-24377 | S |
TTGGCAAAATTCAAGACTCACTTT |
24425-24448 | 0.00 |
0.00 |
98.11 |
5 |
CoV2ID030
Raw data
Min-max
|
PCR primer reverse |
WuhanCoV-spk2-r |
TGTGGTTCATAAAAATTCCTTTGTG |
24876-24900 | S |
CACAAAGGAATTTTTATGAACCACA |
24947-24971 | 0.00 |
0.00 |
98.11 |
5 |
CoV2ID031
Raw data
Min-max
|
PCR primer forward |
NIID_WH-1_F24381 |
TCAAGACTCACTTTCTTCCAC |
24364-24384 | S |
TCAAGACTCACTTTCTTCCAC |
24435-24455 | 0.00 |
0.00 |
98.02 |
5 |
CoV2ID032
Raw data
Min-max
|
PCR primer reverse |
NIID_WH-1_R24873 |
ATTTGAAACAAAGACACCTTCAC |
24834-24856 | S |
GTGAAGGTGTCTTTGTTTCAAAT |
24905-24927 | 0.00 |
0.00 |
98.11 |
5 |
CoV2ID033
Raw data
Min-max
|
PCR primer forward |
NIID_WH-1_Seq_F24383 |
AAGACTCACTTTCTTCCACAG |
24366-24386 | S |
AAGACTCACTTTCTTCCACAG |
24437-24457 | 0.00 |
0.00 |
98.02 |
5 |
CoV2ID034
Raw data
Min-max
|
PCR primer reverse |
NIID_WH-1_Seq_R24865 |
CAAAGACACCTTCACGAGG |
24830-24848 | S |
CCTCGTGAAGGTGTCTTTG |
24901-24919 | 0.00 |
0.00 |
98.11 |
5 |
CoV2ID035
Raw data
Min-max
|
PCR primer forward |
NIID_2019-nCOV_N_F2 |
AAATTTTGGGGACCAGGAAC |
29125-29144 | N |
AAATTTTGGGGACCAGGAAC |
29196-29215 | 100.00 |
100.00 |
100.00 |
5 |
CoV2ID036
Raw data
Min-max
|
PCR primer reverse |
NIID_2019-nCOV_N_R2 |
TGGCAGCTGTGTAGGTCAAC |
29263-29282 | N |
GTTGACCTACACAGGTGCCA |
29334-29353 | 100.00 |
100.00 |
100.00 |
5 |
CoV2ID037
Raw data
Min-max
|
Probe |
NIID_2019-nCOV_N_P2 |
ATGTCGCGCATTGGCATGGA |
29222-29241 | N |
ATGTCGCGCATTGGCATGGA |
29293-29312 | 95.00 |
100.00 |
99.91 |
5 |
CoV2ID038
Raw data
Min-max
|
PCR primer forward |
CDC_2019-nCoV_N1-F |
GACCCCAAAATCAGCGAAAT |
28287-28306 | N |
GACCCCAAAATCAGCGAAAT |
28358-28377 | 100.00 |
100.00 |
100.00 |
6 |
CoV2ID039
Raw data
Min-max
|
PCR primer reverse |
CDC_2019-nCoV_N1-R |
TCTGGTTACTGCCAGTTGAATCTG |
28335-28358 | N |
CAGATTCAACTGGCAGTAACCAGA |
28406-28429 | 100.00 |
100.00 |
100.00 |
6 |
CoV2ID040
Raw data
Min-max
|
Probe |
CDC_2019-nCoV_N1-P |
ACCCCGCATTACGTTTGGTGGACC |
28309-28332 | N |
ACCCCGCATTACGTTTGGTGGACC |
28380-28403 | 100.00 |
100.00 |
100.00 |
6 |
CoV2ID041
Raw data
Min-max
|
PCR primer forward |
CDC_2019-nCoV_N2-F |
TTACAAACATTGGCCGCAAA |
29164-29183 | N |
TTACAAACATTGGCCGCAAA |
29235-29254 | 100.00 |
100.00 |
100.00 |
6 |
CoV2ID042
Raw data
Min-max
|
PCR primer reverse |
CDC_2019-nCoV_N2-R |
GCGCGACATTCCGAAGAA |
29213-29230 | N |
TTCTTCGGAATGTCGCGC |
29284-29301 | 94.44 |
100.00 |
99.90 |
6 |
CoV2ID043
Raw data
Min-max
|
Probe |
CDC_2019-nCoV_N2-P |
ACAATTTGCCCCCAGCGCTTCAG |
29188-29210 | N |
ACAATTTGCCCCCAGCGCTTCAG |
29259-29281 | 100.00 |
100.00 |
100.00 |
6 |
CoV2ID044
Raw data
Min-max
|
PCR primer forward |
CDC_2019-nCoV_N3-F |
GGGAGCCTTGAATACACCAAAA |
28681-28702 | N |
GGGAGCCTTGAATACACCAAAA |
28752-28773 | 100.00 |
100.00 |
100.00 |
6 |
CoV2ID045
Raw data
Min-max
|
PCR primer reverse |
CDC_2019-nCoV_N3-R |
TGTAGCACGATTGCAGCATTG |
28732-28752 | N |
CAATGCTGCAATCGTGCTACA |
28803-28823 | 100.00 |
100.00 |
100.00 |
6 |
CoV2ID046
Raw data
Min-max
|
Probe |
CDC_2019-nCoV_N3-P |
AYCACATTGGCACCCGCAATCCTG |
28704-28727 | N |
ATCACATTGGCACCCGCAATCCTG |
28777-28798 | 100.00 |
100.00 |
100.00 |
6 |
CoV2ID047
Raw data
Min-max
|
PCR primer forward |
Pasteur_nCoV_IP2-12669Fw |
ATGAGCTTAGTCCTGTTG |
12690-12707 | ORF1ab |
ATGAGCTTAGTCCTGTTG |
12738-12755 | 100.00 |
100.00 |
100.00 |
7 |
CoV2ID048
Raw data
Min-max
|
PCR primer reverse |
Pasteur_nCoV_IP2-12759Rv |
CTCCCTTTGTTGTGTTGT |
12780-12797 | ORF1ab |
ACAACACAACAAAGGGAG |
12828-12845 | 100.00 |
100.00 |
100.00 |
7 |
CoV2ID049
Raw data
Min-max
|
Probe |
Pasteur_nCoV_IP2-12696bProbe |
AGATGTCTTGTGCTGCCGGTA |
12717-12737 | ORF1ab |
AGATGTCTTGTGCTGCCGGTA |
12765-12785 | 100.00 |
100.00 |
100.00 |
7 |
CoV2ID050
Raw data
Min-max
|
PCR primer forward |
Pasteur_nCoV_IP4-14059Fw |
GGTAACTGGTATGATTTCG |
14080-14098 | ORF1ab |
GGTAACTGGTATGATTTCG |
14130-14148 | 100.00 |
100.00 |
100.00 |
7 |
CoV2ID051
Raw data
Min-max
|
PCR primer reverse |
Pasteur_nCoV_IP4-14146Rv |
CTGGTCAAGGTTAATATAGG |
14167-14186 | ORF1ab |
CCTATATTAACCTTGACCAG |
14217-14236 | 100.00 |
100.00 |
100.00 |
7 |
CoV2ID052
Raw data
Min-max
|
Probe |
Pasteur_nCoV_IP4-14084Probe |
TCATACAAACCACGCCAGG |
14105-14123 | ORF1ab |
TCATACAAACCACGCCAGG |
14155-14173 | 100.00 |
100.00 |
100.00 |
7 |
CoV2ID053
Raw data
Min-max
|
PCR primer forward |
RBD-qF1 |
CAATGGTTTAACAGGCACAGG |
23191 - 23211 | S |
CAATGGTTTAACAGGCACAGG |
23262-23282 | 0.00 |
0.00 |
98.11 |
8 |
CoV2ID054
Raw data
Min-max
|
PCR primer reverse |
RBD-qR1 |
CTCAAGTGTCTGTGGATCACG |
23291 - 23311 | S |
CGTGATCCACAGACACTTGAG |
23362-23382 | 100.00 |
100.00 |
100.00 |
8 |
CoV2ID055
Raw data
Min-max
|
PCR primer forward |
ND-CoVs-951F |
TGTKAGRTTYCCTAAYATTAC |
22540 - 22560 | S |
TGTTAGATTTCCTAATATTAC |
22611-22631 | 0.00 |
0.00 |
97.34 |
8 |
CoV2ID056
Raw data
Min-max
|
PCR primer reverse |
D-CoVs-1805R |
ACATCYTGATANARAACAGC |
23387 - 23406 | S |
GCTGTTCTTTATCAGGATGT |
23458-23477 | 95.00 |
100.00 |
99.81 |
8 |
CoV2ID057
Raw data
Min-max
|
PCR primer forward |
nCoV_2019 Forward |
CAAATTCTATGGTGGTTGGCACA |
15216 - 15238 | ORF1ab |
CAAATTCTATGGTGGTTGGCACA |
15266-15288 | 0.00 |
0.00 |
98.11 |
9 |
CoV2ID058
Raw data
Min-max
|
PCR primer reverse |
nCoV_2019 Reverse |
GGCATGGCTCTATCACATTTAGG |
15298 - 15320 | ORF1ab |
CCTAAATGTGATAGAGCCATGCC |
15348-15370 | 0.00 |
0.00 |
98.11 |
9 |
CoV2ID059
Raw data
Min-max
|
Probe |
CoV_Probe |
ATAATCCCAACCCATRAG |
15280 - 15297 | ORF1ab |
CTTATGGGTTGGGATTAT |
15330-15347 | 0.00 |
0.00 |
98.11 |
9 |
CoV2ID060
Raw data
Min-max
|
Target Generation |
N-gene-FWD IVT |
AATTCTAATACGACTCACTATAGGGCCAAA(...) |
28519 - 28545 | N |
CCAAATTGGCTACTACCGAAGAGCTAC |
28590-28616 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID061
Raw data
Min-max
|
Target Generation |
N-gene-REV IVT |
CACAGTTTGCTGTTTCTTCTGTCTCTGCGG |
29420 - 29449 | N |
CCGCAGAGACAGAAGAAACAGCAAACTGTG |
29491-29520 | 0.00 |
0.00 |
96.26 |
10 |
CoV2ID062
Raw data
Min-max
|
Target Generation |
E-gene-FWD IVT |
AATTCTAATACGACTCACTATAGGGCTGGT(...) |
26060 - 26088 | E |
CTGGTGTTGAACATGTTACCTTCTTCATC |
26131-26159 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID063
Raw data
Min-max
|
Target Generation |
E-gene-REV IVT |
CCTATTACTAGGTTCCATTGTTC |
26574 - 26596 | E |
GAACAATGGAACCTAGTAATAGG |
26645-26667 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID064
Raw data
Min-max
|
LAMP outer forward primer |
F3 2019-nCoV N-gene |
AACACAAGCTTTCGGCAG |
29083 - 29100 | N |
AACACAAGCTTTCGGCAG |
29154-29171 | 94.44 |
100.00 |
99.59 |
10 |
CoV2ID065
Raw data
Min-max
|
LAMP outer backward primer |
B3 2019-nCoV N-gene |
GAAATTTGGATCTTTGTCATCC |
29290 - 29311 | N |
GGATGACAAAGATCCAAATTTC |
29361-29382 | 90.91 |
100.00 |
99.74 |
10 |
CoV2ID066
Raw data
Min-max
|
LAMP backward inner primer |
BIP 2019-nCoV N-gene |
TGCGGCCAATGTTTGTAATCAGCCAAGGAA(...) |
29119 - 29137 | N |
CCAAGGAAATTTTGGGGAC |
29231-29252 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID067
Raw data
Min-max
|
LAMP forward inner primer |
FIP 2019-nCoV N-gene |
CGCATTGGCATGGAAGTCACTTTGATGGCA(...) |
29269 - 29287 | N |
CTACACAGGTGCCATCAAA |
29299-29318 | 95.00 |
100.00 |
99.91 |
10 |
CoV2ID068
Raw data
Min-max
|
LAMP loop forward primer |
LF 2019-nCoV N-gene |
TTCCTTGTCTGATTAGTTC |
29141 - 29159 | N |
GAACTAATCAGACAAGGAA |
29212-29230 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID069
Raw data
Min-max
|
LAMP loop backward primer |
LB 2019-nCoV N-gene |
ACCTTCGGGAACGTGGTT |
29248 - 29265 | N |
ACCTTCGGGAACGTGGTT |
29319-29336 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID070
Raw data
Min-max
|
LAMP outer forward primer |
F3 2019-nCoV E-gene |
CCGACGACGACTACTAGC |
26191 - 26208 | E |
CCGACGACGACTACTAGC |
26262-26279 | 77.78 |
100.00 |
99.58 |
10 |
CoV2ID071
Raw data
Min-max
|
LAMP outer backward primer |
B3 2019-nCoV E-gene |
AGAGTAAACGTAAAAAGAAGGTT |
26402 - 26424 | E |
AACCTTCTTTTTACGTTTACTCT |
26473-26495 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID072
Raw data
Min-max
|
LAMP backward inner primer |
BIP 2019-nCoV E-gene |
ACCTGTCTCTTCCGAAACGAATTTGTAAGC(...) |
26214 - 26233 | E |
TTTGTAAGCACAAGCTGATG |
26324-26345 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID073
Raw data
Min-max
|
LAMP forward inner primer |
FIP 2019-nCoV E-gene |
CTAGCCATCCTTACTGCGCTACTCACGTTA(...) |
26374 - 26394 | E |
TGCAATATTGTTAACGTGAGT |
26445-26465 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID074
Raw data
Min-max
|
LAMP loop forward primer |
LF 2019-nCoV E-gene |
TCGATTGTGTGCGTACTGC |
26355 - 26373 | E |
TCGATTGTGTGCGTACTGC |
26426-26444 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID075
Raw data
Min-max
|
LAMP loop backward primer |
LB 2019-nCoV E-gene |
TGAGTACATAAGTTCGTAC |
26235 - 26253 | E |
GTACGAACTTATGTACTCA |
26306-26324 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID076
Raw data
Min-max
|
PCR primer forward |
N_Sarbeco_F |
CACATTGGCACCCGCAATC |
28706 - 28724 | N |
CACATTGGCACCCGCAATC |
28777-28795 | 100.00 |
100.00 |
100.00 |
11 |
CoV2ID077
Raw data
Min-max
|
PCR primer reverse |
N_Sarbeco_R |
GAGGAACGAGAAGAGGCTTG |
28814 - 28833 | N |
CAAGCCTCTTCTCGTTCCTC |
28885-28904 | 100.00 |
100.00 |
100.00 |
11 |
CoV2ID078
Raw data
Min-max
|
Probe |
N_Sarbeco_P |
ACTTCCTCAAGGAACAACATTGCCA |
28753 - 28777 | N |
ACTTCCTCAAGGAACAACATTGCCA |
28824-28848 | 100.00 |
100.00 |
100.00 |
11 |
CoV2ID079
Raw data
Min-max
|
PCR primer forward |
nsp2f |
ATGCATTTGCATCAGAGGCT |
1866 - 1885 | ORF1ab |
ATGCATTTGCATCAGAGGCT |
1902-1921 | 100.00 |
100.00 |
100.00 |
12 |
CoV2ID080
Raw data
Min-max
|
PCR primer reverse |
nsp2r |
TTGTTATAGCGGCCTTCTGT |
1951 - 1970 | ORF1ab |
ACAGAAGGCCGCTATAACAA |
1987-1998 | 83.33 |
100.00 |
99.69 |
12 |
CoV2ID081
Raw data
Min-max
|
PCR primer forward |
N_gene_Taq1 |
TCTGGTAAAGGCCAACAACAA |
28976 - 28996 | N |
TCTGGTAAAGGCCAACAACAA |
29047-29067 | 100.00 |
100.00 |
100.00 |
13 |
CoV2ID082
Raw data
Min-max
|
PCR primer reverse |
N_gene_Taq2 |
TGTATGCTTTAGTGGCAGTACG |
29057 - 29078 | N |
CGTACTGCCACTAAAGCATACA |
29128-29149 | 100.00 |
100.00 |
100.00 |
13 |
CoV2ID083
Raw data
Min-max
|
Probe |
N_gene_Probe |
CTGTCACTAAGAAATCTGCTGCTGAGGC |
29007 - 29034 | N |
CTGTCACTAAGAAATCTGCTGCTGAGGC |
29078-29105 | 100.00 |
100.00 |
100.00 |
13 |
CoV2ID084
Raw data
Min-max
|
PCR primer forward |
orf1ab-F |
CAGACCTCGTCTATGCTTTAAGGC |
13814 - 13837 | ORF1ab |
CAGACCTCGTCTATGCTTTAAGGC |
13864-13887 | 100.00 |
100.00 |
100.00 |
14 |
CoV2ID085
Raw data
Min-max
|
PCR primer reverse |
orf1ab-R |
CCCTGGTCAAGGTTAATATAGGCA |
14165 - 14188 | ORF1ab |
TGCCTATATTAACCTTGACCAGGG |
14215-14238 | 100.00 |
100.00 |
100.00 |
14 |
CoV2ID086
Raw data
Min-max
|
PCR primer forward |
S-F |
CTTCCCTCAGTCAGCACCTC |
24715 - 24734 | S |
CTTCCCTCAGTCAGCACCTC |
24786-24805 | 100.00 |
100.00 |
100.00 |
14 |
CoV2ID087
Raw data
Min-max
|
PCR primer reverse |
S-R |
AACCAGTGTGTGCCATTTGA |
24815 - 24870 | S |
TCAAATGGCACACACTGGTT |
24922-24941 | 0.00 |
0.00 |
98.11 |
14 |
CoV2ID088
Raw data
Min-max
|
LAMP outer forward primer |
orf1ab-4F3 |
GGTATGATTTTGTAGAAAACCCA |
13925 - 13947 | ORF1ab |
GGTATGATTTTGTAGAAAACCCA |
13975-13997 | 100.00 |
100.00 |
100.00 |
14 |
CoV2ID089
Raw data
Min-max
|
LAMP outer backward primer |
orf1ab-4B3 |
CAACAGGAACTCCACTACC |
14122 - 14140 | ORF1ab |
GGTAGTGGAGTTCCTGTTG |
14172-14190 | 100.00 |
100.00 |
100.00 |
14 |
CoV2ID090
Raw data
Min-max
|
LAMP forward inner primer |
orf1ab-4FIP |
GGCATCACAGAATTGTACTGTTTTTGCGTA(...) |
13958 - 13976 | ORF1ab |
GCGTATACGCCAACTTAGG |
14051-14075 | 100.00 |
100.00 |
100.00 |
14 |
CoV2ID091
Raw data
Min-max
|
LAMP backward inner primer |
orf1ab-4BIP |
AATGCTGGTATTGTTGGTGTACTGAGGTTT(...) |
14095 - 14115 | ORF1ab |
TTCGGTGATTTCATACAAACC |
14082-14106 | 96.00 |
100.00 |
99.92 |
14 |
CoV2ID092
Raw data
Min-max
|
LAMP loop forward primer |
orf1ab-4LF |
AACAAAGCTTGGCGTACACGTTCA |
13977 - 14000 | ORF1ab |
TGAACGTGTACGCCAAGCTTTGTT |
14027-14050 | 100.00 |
100.00 |
100.00 |
14 |
CoV2ID093
Raw data
Min-max
|
LAMP outer forward primer |
S-123F3 |
TCTATTGCCATACCCACAA |
23693 - 23711 | S |
TCTATTGCCATACCCACAA |
23764-23782 | 0.00 |
0.00 |
98.11 |
14 |
CoV2ID094
Raw data
Min-max
|
LAMP outer backward primer |
S-123B3 |
GGTGTTTTGTAAATTTGTTTGAC |
23915 - 23937 | S |
GTCAAACAAATTTACAAAACACC |
23986-24008 | 0.00 |
0.00 |
98.11 |
14 |
CoV2ID095
Raw data
Min-max
|
LAMP forward inner primer |
S-123FIP |
CATTCAGTTGAATCACCACAAATGTGTGTT(...) |
23724 - 23745 | S |
GTGTTACCACAGAAATTCTACC |
23855-23879 | 0.00 |
0.00 |
96.26 |
14 |
CoV2ID096
Raw data
Min-max
|
LAMP backward inner primer |
S-123BIP |
GTTGCAATATGGCAGTTTTTGTACATTGGG(...) |
23880 - 23899 | S |
AACAAGACAAAAACACCCAA |
23892-23916 | 0.00 |
0.00 |
98.11 |
14 |
CoV2ID097
Raw data
Min-max
|
LAMP loop forward primer |
S-123LF |
ACTGATGTCTTGGTCATAGACACT |
23746 - 23769 | S |
AGTGTCTATGACCAAGACATCAGT |
23817-23840 | 0.00 |
0.00 |
96.26 |
14 |
CoV2ID098
Raw data
Min-max
|
LAMP loop backward primer |
S-123LB |
TAAACCGTGCTTTAACTGGAATAGC |
23850 - 23874 | S |
TAAACCGTGCTTTAACTGGAATAGC |
23921-23945 | 0.00 |
0.00 |
98.11 |
14 |
CoV2ID099
Raw data
Min-max
|
PCR primer forward |
Chan_S_gene_F |
CCTACTAAATTAAATGATCTCTGCTTTACT |
22712 - 22741 | S |
CCTACTAAATTAAATGATCTCTGCTTTACT |
22783-22812 | 0.00 |
0.00 |
98.11 |
15 |
CoV2ID100
Raw data
Min-max
|
PCR primer reverse |
Chan_S_gene_R |
CAAGCTATAACGCAGCCTGTA |
22849 - 22869 | S |
TACAGGCTGCGTTATAGCTTG |
22920-22940 | 0.00 |
0.00 |
98.11 |
15 |
CoV2ID101
Raw data
Min-max
|
PCR primer forward |
Chan_RdRp_gene_F |
CAAGTGGGGTAAGGCTAGACTTT |
14965 - 14983 | ORF1ab |
TGGGGTAAGGCTAGACTTT |
15015-15033 | 0.00 |
0.00 |
98.11 |
15 |
CoV2ID102
Raw data
Min-max
|
PCR primer reverse |
Chan_RdRp_gene_R |
ACTTAGGATAATCCCAACCCAT |
15283 - 15302 | ORF1ab |
ATGGGTTGGGATTATCCTAA |
15333-15352 | 0.00 |
0.00 |
98.11 |
15 |
CoV2ID103
Raw data
Min-max
|
PCR primer forward |
Caly_BetaCoV_RdRp_F |
AAATTCTATGGTGGTTGGCACAACATGTT |
15217 - 15245 | ORF1ab |
AAATTCTATGGTGGTTGGCACAACATGTT |
15267-15295 | 0.00 |
0.00 |
98.11 |
16 |
CoV2ID104
Raw data
Min-max
|
PCR primer reverse |
Caly_BetaCoV_RdRp_R |
TAGGCATAGCTCTRTCACAYTT |
15301 - 15322 | ORF1ab |
AAATGTGATAGAGCCATGCCTA |
15351-15372 | 0.00 |
0.00 |
98.11 |
16 |
CoV2ID105
Raw data
Min-max
|
Probe |
Caly_BetaCoV_RdRp_P |
TGGGTTGGGATTATC |
15284 - 15298 | ORF1ab |
TGGGTTGGGATTATC |
15334-15348 | 0.00 |
0.00 |
98.11 |
16 |
CoV2ID106
Raw data
Min-max
|
PCR primer forward |
Huang_E_gene_F |
ACTTCTTTTTCTTGCTTTCGTGGT |
26295 - 26318 | E |
ACTTCTTTTTCTTGCTTTCGTGGT |
26366-26389 | 100.00 |
100.00 |
100.00 |
17 |
CoV2ID107
Raw data
Min-max
|
PCR primer reverse |
Huang_E_gene_R |
GCAGCAGTACGCACACAATC |
26357 - 26376 | E |
GATTGTGTGCGTACTGCTGC |
26428-26447 | 100.00 |
100.00 |
100.00 |
17 |
CoV2ID108
Raw data
Min-max
|
Probe |
Huang_E_gene_P |
CTAGTTACACTAGCCATCCTTACTGC |
26326 - 26351 | E |
CTAGTTACACTAGCCATCCTTACTGC |
26397-26422 | 96.15 |
100.00 |
99.86 |
17 |
CoV2ID109
Raw data
Min-max
|
PCR primer forward |
Lu_orf1ab_F |
AGAAGATTGGTTAGATGATGATAGT |
3193 - 3217 | ORF1ab |
AGAAGATTGGTTAGATGATGATAGT |
3235-3259 | 0.00 |
0.00 |
98.11 |
18 |
CoV2ID110
Raw data
Min-max
|
PCR primer reverse |
Lu_orf1ab_R |
TTCCATCTCTAATTGAGGTTGAACC |
3286 - 3310 | ORF1ab |
GGTTCAACCTCAATTAGAGATGGAA |
3328-3352 | 100.00 |
100.00 |
100.00 |
18 |
CoV2ID111
Raw data
Min-max
|
Probe |
Lu_orf1ab_P |
TCCTCACTGCCGTCTTGTTGACCA |
3229 - 3252 | ORF1ab |
TGGTCAACAAGACGGCAGTGAGGA |
3271-3294 | 8.33 |
40.00 |
98.27 |
18 |
CoV2ID112
Raw data
Min-max
|
LAMP outer forward primer |
F3 2019-nCoV N1-gene |
TGGACCCCAAAATCAGCG |
28285 - 28302 | N |
TGGACCCCAAAATCAGCG |
28356-28373 | 100.00 |
100.00 |
100.00 |
19 |
CoV2ID113
Raw data
Min-max
|
LAMP outer backward primer |
B3 2019-nCoV N1-gene |
GCCTTGTCCTCGAGGGAAT |
28468 - 28486 | N |
ATTCCCTCGAGGACAAGGC |
28539-28557 | 100.00 |
100.00 |
100.00 |
19 |
CoV2ID114
Raw data
Min-max
|
LAMP forward inner primer |
FIP 2019-nCoV N1-gene |
CCACTGCGTTCTCCATTCTGGTAAATGCAC(...) |
28303 - 28321 | N |
AATGCACCCCGCATTACG |
28424-28445 | 95.45 |
100.00 |
99.91 |
19 |
CoV2ID115
Raw data
Min-max
|
LAMP backward inner primer |
BIP 2019-nCoV N1-gene |
CGCGATCAAAACAACGTCGGCCCTTGCCAT(...) |
28438 - 28457 | N |
TCTCACTCAACATGGCAAGG |
28448-28470 | 95.65 |
80.00 |
99.84 |
19 |
CoV2ID116
Raw data
Min-max
|
LAMP loop forward primer |
LF 2019-nCoV N1-gene |
TGAATCTGAGGGTCCACCAAA |
28322 - 28342 | N |
TTTGGTGGACCCTCAGATTCA |
28393-28413 | 100.00 |
100.00 |
100.00 |
19 |
CoV2ID117
Raw data
Min-max
|
LAMP loop backward primer |
LB 2019-nCoV N1-gene |
GGTTTACCCAATAATACTGCGTCTT |
28403 - 28427 | N |
GGTTTACCCAATAATACTGCGTCTT |
28474-28498 | 96.00 |
100.00 |
99.92 |
19 |
CoV2ID118
Raw data
Min-max
|
LAMP outer forward primer |
F3 2019-nCoV N15-gene |
AGATCACATTGGCACCCG |
28702 - 28719 | N |
AGATCACATTGGCACCCG |
28773-28790 | 100.00 |
100.00 |
100.00 |
19 |
CoV2ID119
Raw data
Min-max
|
LAMP outer backward primer |
B3 2019-nCoV N15-gene |
CCATTGCCAGCCATTCTAGC |
28895 - 28914 | N |
GCTAGAATGGCTGGCAATGG |
28966-28985 | 100.00 |
100.00 |
100.00 |
19 |
CoV2ID120
Raw data
Min-max
|
LAMP forward inner primer |
FIP 2019-nCoV N15-gene |
TGCTCCCTTCTGCGTAGAAGCCAATGCTGC(...) |
28732 - 28751 | N |
CAATGCTGCAATCGTGCTAC |
28852-28873 | 95.45 |
100.00 |
99.91 |
19 |
CoV2ID121
Raw data
Min-max
|
LAMP backward inner primer |
BIP 2019-nCoV N15-gene |
GGCGGCAGTCAAGCCTCTTCCCTACTGCTG(...) |
28864 - 28883 | N |
AACTCCAGGCAGCAGTAGGG |
28876-28895 | 100.00 |
100.00 |
100.00 |
19 |
CoV2ID122
Raw data
Min-max
|
LAMP loop forward primer |
LF 2019-nCoV N15-gene |
GCAATGTTGTTCCTTGAGGAAGTT |
28752 - 28775 | N |
AACTTCCTCAAGGAACAACATTGC |
28823-28846 | 100.00 |
100.00 |
100.00 |
19 |
CoV2ID123
Raw data
Min-max
|
LAMP loop backward primer |
LB 2019-nCoV N15-gene |
GTTCCTCATCACGTAGTCGCAACA |
28827 - 28850 | N |
GTTCCTCATCACGTAGTCGCAACA |
28898-28921 | 100.00 |
100.00 |
100.00 |
19 |
CoV2ID124
Raw data
Min-max
|
LAMP outer forward primer |
F3 2019-nCoV S17-gene |
TCTTTCACACGTGGTGTT |
21653 - 21670 | S |
TCTTTCACACGTGGTGTT |
21724-21741 | 0.00 |
0.00 |
98.11 |
19 |
CoV2ID125
Raw data
Min-max
|
LAMP outer backward primer |
B3 2019-nCoV S17-gene |
GTACCAAAAATCCAGCCTC |
21867 - 21885 | S |
GAGGCTGGATTTTTGGTAC |
21938-21956 | 0.00 |
0.00 |
98.11 |
19 |
CoV2ID126
Raw data
Min-max
|
LAMP forward inner primer |
FIP 2019-nCoV S17-gene |
CATGGAACCAAGTAACATTGGAAAACCTGA(...) |
21677 - 21697 | S |
CCTGACAAAGTTTTCAGATCC |
21808-21832 | 0.00 |
0.00 |
98.11 |
19 |
CoV2ID127
Raw data
Min-max
|
LAMP backward inner primer |
BIP 2019-nCoV S17-gene |
CTCTGGGACCAATGGTACTAAGAGGACTTC(...) |
21838 - 21855 | S |
TGCTTCCACTGAGAAGTC |
21843-21867 | 0.00 |
0.00 |
98.11 |
19 |
CoV2ID128
Raw data
Min-max
|
LAMP loop forward primer |
LF 2019-nCoV S17-gene |
GAAAGGTAAGAACAAGTCCTGAGT |
21713 - 21736 | S |
ACTCAGGACTTGTTCTTACCTTTC |
21784-21807 | 0.00 |
0.00 |
98.11 |
19 |
CoV2ID129
Raw data
Min-max
|
LAMP loop backward primer |
LB 2019-nCoV S17-gene |
CTGTCCTACCATTTAATGATGGTGT |
21807 - 21831 | S |
CTGTCCTACCATTTAATGATGGTGT |
21878-21902 | 0.00 |
0.00 |
98.11 |
19 |
CoV2ID130
Raw data
Min-max
|
LAMP outer forward primer |
F3 2019-nCoV O117-gene |
CCCCAAAATGCTGTTGTT |
1346 - 1363 | ORF1ab |
CCCCAAAATGCTGTTGTT |
1358-1375 | 100.00 |
100.00 |
100.00 |
19 |
CoV2ID131
Raw data
Min-max
|
LAMP outer backward primer |
B3 2019-nCoV O117-gene |
TAGCACGTGGAACCCAAT |
1530 - 1547 | ORF1ab |
ATTGGGTTCCACGTGCTA |
1566-1583 | 0.00 |
0.00 |
98.11 |
19 |
CoV2ID132
Raw data
Min-max
|
LAMP forward inner primer |
FIP 2019-nCoV O117-gene |
GGTTTTCAAGCCAGATTCATTATGGATGTC(...) |
1381 - 1402 | ORF1ab |
TGTCACAATTCAGAAGTAGGA |
1462-1486 | 0.00 |
0.00 |
98.11 |
19 |
CoV2ID133
Raw data
Min-max
|
LAMP backward inner primer |
BIP 2019-nCoV O117-gene |
TCTTCGTAAGGGTGGTCGCAGCACACTTGT(...) |
1509 - 1527 | ORF1ab |
GTTGCCATAACAAGTGTGC |
1489-1508 | 0.00 |
0.00 |
98.11 |
19 |
CoV2ID134
Raw data
Min-max
|
LAMP loop forward primer |
LF 2019-nCoV O117-gene |
TCGGCAAGACTATGCTCAGG |
1403 - 1422 | ORF1ab |
CCTGAGCATAGTCTTGCCGA |
1439-1458 | 0.00 |
0.00 |
98.11 |
19 |
CoV2ID135
Raw data
Min-max
|
LAMP loop backward primer |
LB 2019-nCoV O117-gene |
TTGCCTTTGGAGGCTGTGT |
1476 - 1494 | ORF1ab |
TTGCCTTTGGAGGCTGTGT |
1512-1530 | 0.00 |
0.00 |
98.11 |
19 |
CoV2ID136
Raw data
Min-max
|
LAMP outer forward primer |
F3 2019-nCoV orf1ab-gene |
AAACGTAATGTCATCCCTACT |
15034 - 15054 | ORF1ab |
AAACGTAATGTCATCCCTACT |
15084-15104 | 0.00 |
0.00 |
98.11 |
20 |
CoV2ID137
Raw data
Min-max
|
LAMP outer backward primer |
B3 2019-nCoV orf1ab-gene |
ACTGTTTATAGTGATGTAGAAAACC |
15250 - 15274 | ORF1ab |
ACTGTTTATAGTGATGTAGAAAACC |
15300-15324 | 0.00 |
0.00 |
98.11 |
20 |
CoV2ID138
Raw data
Min-max
|
LAMP forward inner primer |
FIP 2019-nCoV orf1ab-gene |
ACAGATAGAGACACCAGCTACGGCTCAAAT(...) |
15059 - 15082 | ORF1ab |
CTCAAATGAATCTTAAGTATGCCA |
15109-15132 | 0.00 |
0.00 |
98.11 |
20 |
CoV2ID139
Raw data
Min-max
|
LAMP backward inner primer |
BIP 2019-nCoV orf1ab-gene |
ATAGCCGCCACTAAGAGGAGCCCAACCACC(...) |
15215 - 15234 | ORF1ab |
CAAATTCTATGGTGGTTGG |
15265-15284 | 0.00 |
0.00 |
98.11 |
20 |
CoV2ID140
Raw data
Min-max
|
LAMP loop backward primer |
LF 2019-nCoV orf1ab-gene |
TTAGTGCAAAGAATAGAGCTCGCA |
15083 - 15106 | N |
TTAGTGCAAAGAATAGAGCTCGCA |
15133-15156 | 0.00 |
0.00 |
98.11 |
21 |
CoV2ID141
Raw data
Min-max
|
LAMP outer forward primer |
F3 2019-nCoV N-gene |
GCCAAAAGGCTTCTACGCA |
28774 - 28792 | N |
GCCAAAAGGCTTCTACGCA |
28845-28863 | 94.74 |
80.00 |
99.90 |
21 |
CoV2ID142
Raw data
Min-max
|
LAMP outer backward primer |
B3 2019-nCoV N-gene |
TTGCTCTCAAGCTGGTTCAA |
28952 - 28971 | N |
TTGAACCAGCTTGAGAGCAA |
29023-29042 | 100.00 |
100.00 |
100.00 |
21 |
CoV2ID143
Raw data
Min-max
|
LAMP forward inner primer |
FIP 2019-nCoV N-gene |
TCCCCTACTGCTGCCTGGAGCAGTCAAGCC(...) |
28809 - 28829 | N |
GCAGTCAAGCCTCTTCTCGTT |
28880-28900 | 100.00 |
100.00 |
100.00 |
21 |
CoV2ID144
Raw data
Min-max
|
LAMP backward inner primer |
BIP 2019-nCoV N-gene |
TCTCCTGCTAGAATGGCTGGCATCTGTCAA(...) |
28932 - 28952 | N |
CTTTGCTGCTGCTTGACAGAT |
28960-28981 | 100.00 |
100.00 |
100.00 |
21 |
CoV2ID145
Raw data
Min-max
|
LAMP loop backward primer |
LB 2019-nCoV N-gene |
TGGCGGTGATGCTGCTCTT |
28912 - 28930 | N |
TGGCGGTGATGCTGCTCTT |
28983-29001 | 94.74 |
80.00 |
99.90 |
21 |
CoV2ID146
Raw data
Min-max
|
LAMP outer forward primer |
GeneN-A-F3 |
TGGCTACTACCGAAGAGCT |
28525 - 28543 | N |
TGGCTACTACCGAAGAGCT |
28596-28614 | 100.00 |
100.00 |
100.00 |
22 |
CoV2ID147
Raw data
Min-max
|
LAMP outer backward primer |
GeneN-A-B3 |
TGCAGCATTGTTAGCAGGAT |
28722 - 28741 | N |
ATCCTGCTAACAATGCTGCA |
28793-28812 | 100.00 |
100.00 |
100.00 |
22 |
CoV2ID148
Raw data
Min-max
|
LAMP loop forward primer |
GeneN-A-LF |
GGACTGAGATCTTTCATTTTACCGT |
28566 - 28590 | N |
ACGGTAAAATGAAAGATCTCAGTCC |
28637-28661 | 100.00 |
100.00 |
100.00 |
22 |
CoV2ID149
Raw data
Min-max
|
LAMP loop backward primer |
GeneN-A-LB |
ACTGAGGGAGCCTTGAATACA |
28676 - 28696 | N |
ACTGAGGGAGCCTTGAATACA |
28747-28767 | 100.00 |
100.00 |
100.00 |
22 |
CoV2ID150
Raw data
Min-max
|
LAMP forward inner primer |
GeneN-A-FIP |
TCTGGCCCAGTTCCTAGGTAGTCCAGACGA(...) |
28545 - 28563 | N |
CCAGACGAATTCGTGGTGG |
28676-28697 | 100.00 |
100.00 |
100.00 |
22 |
CoV2ID151
Raw data
Min-max
|
LAMP backward inner primer |
GeneN-A-BIP |
AGACGGCATCATATGGGTTGCACGGGTGCC(...) |
28702 - 28719 | N |
AGATCACATTGGCACCCG |
28725-28746 | 95.45 |
80.00 |
99.83 |
22 |
CoV2ID152
Raw data
Min-max
|
LAMP loop forward primer |
2019-nCoV N-gene_LF |
CGACTACGTGATGAGGAACGA |
28825 - 28845 | N |
TCGTTCCTCATCACGTAGTCG |
28896-28916 | 100.00 |
100.00 |
100.00 |
23 |
CoV2ID153
Raw data
Min-max
|
LAMP loop backward primer |
2019-nCoV N-gene_LB |
AATGGCGGTGATGCTGCTCTT |
28910 - 28930 | N |
AATGGCGGTGATGCTGCTCTT |
28981-29001 | 95.24 |
100.00 |
99.91 |
23 |
CoV2ID154
Raw data
Min-max
|
LAMP outer forward primer |
F3 2019-nCoV orf-gene |
TGCTTCAGTCAGCTGATG |
13434 - 13451 | ORF1ab |
TGCTTCAGTCAGCTGATG |
13484-13501 | 94.44 |
100.00 |
99.90 |
23 |
CoV2ID155
Raw data
Min-max
|
LAMP outer backward primer |
B3 2019-nCoV orf-gene |
TTAAATTGTCATCTTCGTCCTT |
13615 - 13636 | ORF1ab |
AAGGACGAAGATGACAATTTAA |
13665-13686 | 100.00 |
100.00 |
100.00 |
23 |
CoV2ID156
Raw data
Min-max
|
LAMP forward inner primer |
FIP 2019-nCoV orf-gene |
TCAGTACTAGTGCCTGTGCCCACAATCGTT(...) |
13452 - 13472 | ORF1ab |
CACAATCGTTTTTAAACGGGT |
13502-13522 | 90.48 |
100.00 |
99.82 |
23 |
CoV2ID157
Raw data
Min-max
|
LAMP backward inner primer |
BIP 2019-nCoV orf-gene |
TCGTATACAGGGCTTTTGACATCTATCTTG(...) |
13596 - 13613 | ORF1ab |
TTGTTGTCGCTTCCAAGA |
13579-13603 | 92.00 |
100.00 |
99.85 |
23 |
CoV2ID158
Raw data
Min-max
|
LAMP loop forward primer |
LF 2019-nCoV orf-gene |
CTGCACTTACACCGCAA |
13473 - 13489 | ORF1ab |
TTGCGGTGTAAGTGCAG |
13523-13539 | 100.00 |
100.00 |
100.00 |
23 |
CoV2ID159
Raw data
Min-max
|
LAMP loop backward primer |
LB 2019-nCoV orf-gene |
GTAGCTGGTTTTGCTAAATTCC |
13564 - 13585 | ORF1ab |
GTAGCTGGTTTTGCTAAATTCC |
13614-13635 | 90.91 |
100.00 |
99.83 |
23 |
CoV2ID160
Raw data
Min-max
|
LAMP outer forward primer |
As1_ORF1ab_F3 |
GGTGGACAAATTGTCAC |
2246 - 2262 | ORF1ab |
GGTGGACAAATTGTCAC |
2288-2304 | 100.00 |
100.00 |
100.00 |
24 |
CoV2ID161
Raw data
Min-max
|
LAMP outer backward primer |
As1_ORF1ab_B3 |
CTTCTCTGGATTTAACACACTT |
2420 - 2441 | ORF1ab |
AAGTGTGTTAAATCCAGAGAAG |
2462-2483 | 100.00 |
100.00 |
100.00 |
24 |
CoV2ID162
Raw data
Min-max
|
LAMP loop forward primer |
As1_ORF1ab_LF |
TTACAAGCTTAAAGAATGTCTGAACACT |
2285 - 2312 | ORF1ab |
AGTGTTCAGACATTCTTTAAGCTTGTAA |
2327-2354 | 100.00 |
100.00 |
100.00 |
24 |
CoV2ID163
Raw data
Min-max
|
LAMP loop backward primer |
As1_ORF1ab_LB |
TTGAATTTAGGTGAAACATTTGTCACG |
2372 - 2398 | ORF1ab |
TTGAATTTAGGTGAAACATTTGTCACG |
2414-2440 | 100.00 |
100.00 |
100.00 |
24 |
CoV2ID164
Raw data
Min-max
|
LAMP forward inner primer |
As1_ORF1ab_FIP |
TCAGCACACAAAGCCAAAAATTTATCTGTG(...) |
2263 - 2284 | ORF1ab |
CTGTGCAAAGGAAATTAAGGAG |
2355-2379 | 100.00 |
100.00 |
100.00 |
24 |
CoV2ID165
Raw data
Min-max
|
LAMP backward inner primer |
As1_ORF1ab_BIP |
TATTGGTGGAGCTAAACTTAAAGCCCTGTA(...) |
2399 - 2418 | ORF1ab |
CACTCAAAGGGATTGTACAG |
2389-2413 | 100.00 |
100.00 |
100.00 |
24 |
CoV2ID166
Raw data
Min-max
|
LAMP forward inner primer |
As1e_ORF1ab_FIP |
TCAGCACACAAAGCCAAAAATTTATTTTTC(...) |
2263 - 2284 | ORF1ab |
CTGTGCAAAGGAAATTAAGGAG |
2353-2379 | 100.00 |
100.00 |
100.00 |
24 |
CoV2ID167
Raw data
Min-max
|
LAMP backward inner primer |
As1e_ORF1ab_BIP |
TATTGGTGGAGCTAAACTTAAAGCCTTTTC(...) |
2399 - 2421 | ORF1ab |
CACTCAAAGGGATTGTACAGAAA |
2389-2415 | 100.00 |
100.00 |
100.00 |
24 |
CoV2ID168
Raw data
Min-max
|
RPA forward primer |
Metsky_orf1ab_F |
gaaatTAATACGACTCACTATAgggCCAAG(...) |
3130 - 3159 | ORF1ab |
CCAAGGTAAACCTTTGGAATTTGGTGCCAC |
3172-3201 | 0.00 |
0.00 |
96.14 |
25 |
CoV2ID169
Raw data
Min-max
|
RPA reverse primer |
Metsky_orf1ab_R |
ACTATCATCATCTAACCAATCTTCTTCTTG |
3188 - 3217 | ORF1ab |
CAAGAAGAAGATTGGTTAGATGATGATAGT |
3230-3259 | 0.00 |
0.00 |
98.11 |
25 |
CoV2ID170
Raw data
Min-max
|
RPA forward primer |
orf1ab_F |
TAATACGACTCACTATAGGGACATAAACAA(...) |
12041 - 12073 | ORF1ab |
GACATAAACAAGCTTTGTGAAGAAATGCTG(...) |
12089-12121 | 12.12 |
80.00 |
98.34 |
26 |
CoV2ID171
Raw data
Min-max
|
RPA reverse primer |
orf1ab_R |
TTGAGCAGTAGCAAAAGCTGCATATGATGG(...) |
12115 - 12148 | ORF1ab |
CCTTCCATCATATGCAGCTTTTGCTACTGC(...) |
12163-12196 | 97.06 |
80.00 |
99.94 |
26 |
CoV2ID172
Raw data
Min-max
|
gRNA |
gRNA_ORF1ab |
GGGGAUUUAGACUACCCCAAAAACGAAGGG(...) |
12082 - 12109 | ORF1ab |
AACCTTACAAGCTATAGCCTCAGAGTTT |
12130-12157 | 100.00 |
100.00 |
100.00 |
26 |
CoV2ID173
Raw data
Min-max
|
LAMP outer forward primer |
nCoV-N-F3 |
CCAGAATGGAGAACGCAGTG |
28354 - 28373 | N |
CCAGAATGGAGAACGCAGTG |
28425-28444 | 95.00 |
100.00 |
99.91 |
27 |
CoV2ID174
Raw data
Min-max
|
LAMP outer backward primer |
nCoV-N-B3 |
CCGTCACCACCACGAATT |
28552 - 28569 | N |
AATTCGTGGTGGTGACGG |
28623-28640 | 100.00 |
100.00 |
100.00 |
27 |
CoV2ID175
Raw data
Min-max
|
LAMP forward inner primer |
nCoV-N-FIP |
AGCGGTGAACCAAGACGCAGGGCGCGATCA(...) |
28374 - 28392 | N |
GGGCGCGATCAAAACAACG |
28490-28509 | 100.00 |
100.00 |
100.00 |
27 |
CoV2ID176
Raw data
Min-max
|
LAMP backward inner primer |
nCoV-N-BIP |
AATTCCCTCGAGGACAAGGCGAGCTCTTCG(...) |
28524 - 28543 | N |
TTGGCTACTACCGAAGAGCT |
28538-28558 | 100.00 |
100.00 |
100.00 |
27 |
CoV2ID177
Raw data
Min-max
|
LAMP loop forward primer |
nCoV-N-LF |
TTATTGGGTAAACCTTGGGGC |
28396 - 28416 | N |
GCCCCAAGGTTTACCCAATAA |
28467-28487 | 95.24 |
100.00 |
99.91 |
27 |
CoV2ID178
Raw data
Min-max
|
LAMP loop backward primer |
nCoV-N-LB |
TTCCAATTAACACCAATAGCAGTCC |
28488 - 28512 | N |
TTCCAATTAACACCAATAGCAGTCC |
28559-28583 | 100.00 |
100.00 |
100.00 |
27 |
CoV2ID179
Raw data
Min-max
|
LAMP outer backward primer |
Baek_nCoV N-B3 |
AGCCAATTTGGTCATCTGGA |
28510 - 28529 | N |
TCCAGATGACCAAATTGGCT |
28581-28600 | 100.00 |
100.00 |
100.00 |
28 |
CoV2ID180
Raw data
Min-max
|
LAMP forward inner primer |
Baek_nCoV N-FIP |
CGTTGTTTTGATCGCGCCCCATTACGTTTG(...) |
28315 - 28335 | N |
CATTACGTTTGGTGGACCCTC |
28386-28406 | 100.00 |
100.00 |
100.00 |
28 |
CoV2ID181
Raw data
Min-max
|
LAMP backward inner primer |
Baek_nCoV N-BIP |
ATACTGCGTCTTGGTTCACCGCATTGGAAC(...) |
28476 - 28494 | N |
GAGGACAAGGCGTTCCAAT |
28487-28508 | 100.00 |
100.00 |
100.00 |
28 |
CoV2ID182
Raw data
Min-max
|
LAMP loop forward primer |
Baek_nCoV N-LF |
TGCGTTCTCCATTCTGGTTACT |
28349 - 28370 | N |
AGTAACCAGAATGGAGAACGCA |
28420-28441 | 95.45 |
80.00 |
99.91 |
28 |
CoV2ID183
Raw data
Min-max
|
LAMP loop backward primer |
Baek_nCoV N-LB |
TCTCACTCAACATGGCAAGGAA |
28438 - 28459 | N |
TCTCACTCAACATGGCAAGGAA |
28509-28530 | 100.00 |
100.00 |
100.00 |
28 |
CoV2ID184
Raw data
Min-max
|
LAMP outer forward primer |
Nsp3_1-61_F3 |
GGAATTTGGTGCCACTTC |
3145 - 3162 | ORF1ab |
GGAATTTGGTGCCACTTC |
3187-3204 | 0.00 |
0.00 |
96.06 |
29 |
CoV2ID185
Raw data
Min-max
|
LAMP outer backward primer |
Nsp3_1-61_B3 |
CTATTCACTTCAATAGTCTGAACA |
3322 - 3345 | ORF1ab |
TGTTCAGACTATTGAAGTGAATAG |
3364-3387 | 100.00 |
100.00 |
100.00 |
29 |
CoV2ID186
Raw data
Min-max
|
LAMP forward inner primer |
Nsp3_1-61_FIP |
CTTGTTGACCAACAGTTTGTTGACTTCAAC(...) |
3170 - 3190 | ORF1ab |
CTTCAACCTGAAGAAGAGCAA |
3257-3281 | 0.00 |
0.00 |
98.11 |
29 |
CoV2ID187
Raw data
Min-max
|
LAMP backward inner primer |
Nsp3_1-61_BIP |
CGGCAGTGAGGACAATCAGACACTGGTGTA(...) |
3302 - 3321 | ORF1ab |
GAGATGGAACTTACACCAGT |
3283-3304 | 50.00 |
0.00 |
99.06 |
29 |
CoV2ID188
Raw data
Min-max
|
LAMP loop forward primer |
Nsp3_1-61_LF |
ATCATCATCTAACCAATCTTCTTC |
3191 - 3214 | ORF1ab |
GAAGAAGATTGGTTAGATGATGAT |
3233-3256 | 0.00 |
0.00 |
98.11 |
29 |
CoV2ID189
Raw data
Min-max
|
LAMP loop backward primer |
Nsp3_1-61_LB |
TCAAACAATTGTTGAGGTTCAACC |
3271 - 3294 | ORF1ab |
TCAAACAATTGTTGAGGTTCAACC |
3313-3336 | 100.00 |
100.00 |
100.00 |
29 |
CoV2ID190
Raw data
Min-max
|
LAMP outer forward primer |
Nsp3_2-24_F3 |
TGCAACTAATAAAGCCACG |
6253 - 6271 | ORF1ab |
TGCAACTAATAAAGCCACG |
6295-6313 | 100.00 |
100.00 |
100.00 |
29 |
CoV2ID191
Raw data
Min-max
|
LAMP outer backward primer |
Nsp3_2-24_B3 |
CGTCTTTCTGTATGGTAGGATT |
6425 - 6446 | ORF1ab |
AATCCTACCATACAGAAAGACG |
6467-6488 | 100.00 |
100.00 |
100.00 |
29 |
CoV2ID192
Raw data
Min-max
|
LAMP forward inner primer |
Nsp3_2-24_FIP |
TCTGACTTCAGTACATCAAACGAATAAATA(...) |
6280 - 6302 | ORF1ab |
AAATACCTGGTGTATACGTTGTC |
6375-6399 | 100.00 |
100.00 |
100.00 |
29 |
CoV2ID193
Raw data
Min-max
|
LAMP backward inner primer |
Nsp3_2-24_BIP |
GACGCGCAGGGAATGGATAATTCCACTACT(...) |
6403 - 6424 | ORF1ab |
AGTCTCTGAAGAAGTAGTGGAA |
6445-6466 | 100.00 |
100.00 |
100.00 |
29 |
CoV2ID194
Raw data
Min-max
|
LAMP loop forward primer |
Nsp3_2-24_LF |
TGTTTCAACTGGTTTTGTGCTCCA |
6305 - 6328 | ORF1ab |
TGGAGCACAAAACCAGTTGAAACA |
6347-6370 | 100.00 |
100.00 |
100.00 |
29 |
CoV2ID195
Raw data
Min-max
|
LAMP loop backward primer |
Nsp3_2-24_LB |
TCTTGCCTGCGAAGATCTAAAAC |
6379 - 6401 | ORF1ab |
TCTTGCCTGCGAAGATCTAAAAC |
6421-6443 | 100.00 |
100.00 |
100.00 |
29 |
CoV2ID196
Raw data
Min-max
|
LAMP outer forward primer |
S_1-2-2_F3 |
CTGACAAAGTTTTCAGATCCTCAG |
21678 - 21701 | S |
CTGACAAAGTTTTCAGATCCTCAG |
21749-21772 | 0.00 |
0.00 |
96.26 |
29 |
CoV2ID197
Raw data
Min-max
|
LAMP outer backward primer |
S_1-2-2_B3 |
AGTACCAAAAATCCAGCCTCTT |
21865 - 21886 | S |
AAGAGGCTGGATTTTTGGTACT |
21936-21957 | 0.00 |
0.00 |
98.11 |
29 |
CoV2ID198
Raw data
Min-max
|
LAMP forward inner primer |
S_1-2-2_FIP |
TCCCAGAGACATGTATAGCATGGAATCAAC(...) |
21710 - 21732 | S |
TCAACTCAGGACTTGTTCTTACC |
21826-21850 | 0.00 |
0.00 |
98.11 |
29 |
CoV2ID199
Raw data
Min-max
|
LAMP backward inner primer |
S_1-2-2_BIP |
TGGTACTAAGAGGTTTGATAACCCTGTTAG(...) |
21838 - 21860 | S |
TGCTTCCACTGAGAAGTCTAACA |
21855-21881 | 0.00 |
0.00 |
98.11 |
29 |
CoV2ID200
Raw data
Min-max
|
LAMP loop forward primer |
S_1-2-2_LF |
CCAAGTAACATTGGAAAAGAAA |
21733 - 21754 | S |
TTTCTTTTCCAATGTTACTTGG |
21804-21825 | 0.00 |
0.00 |
98.11 |
29 |
CoV2ID201
Raw data
Min-max
|
LAMP loop backward primer |
S_1-2-2_LB |
GTCCTACCATTTAATGATGGTGTTT |
21809 - 21833 | S |
GTCCTACCATTTAATGATGGTGTTT |
21880-21904 | 0.00 |
0.00 |
98.11 |
29 |
CoV2ID202
Raw data
Min-max
|
LAMP forward inner primer |
N_21_FIP |
TCCCCTACTGCTGCCTGGAGGCAGTCAAGC(...) |
28808 - 28827 | N |
GGCAGTCAAGCCTCTTCTCG |
28879-28898 | 100.00 |
100.00 |
100.00 |
29 |
CoV2ID203
Raw data
Min-max
|
LAMP loop forward primer |
N_21_LF |
TGTTGCGACTACGTGATGAGGA |
28829 - 28850 | N |
TCCTCATCACGTAGTCGCAACA |
28900-28921 | 100.00 |
100.00 |
100.00 |
29 |
CoV2ID204
Raw data
Min-max
|
LAMP loop backward primer |
N_21_LB |
ATGGCGGTGATGCTGCTCT |
28911 - 28929 | N |
ATGGCGGTGATGCTGCTCT |
28982-29000 | 94.74 |
100.00 |
99.90 |
29 |
CoV2ID205
Raw data
Min-max
|
LAMP outer forward primer |
NB-F3 |
ACCGAAGAGCTACCAGACG |
28533 - 28551 | N |
ACCGAAGAGCTACCAGACG |
28604-28622 | 100.00 |
100.00 |
100.00 |
30 |
CoV2ID206
Raw data
Min-max
|
LAMP forward inner primer |
NB-FIP |
TCTGGCCCAGTTCCTAGGTAGTTCGTGGTG(...) |
28554 - 28572 | N |
TTCGTGGTGGTGACGGTAA |
28676-28697 | 100.00 |
100.00 |
100.00 |
30 |
CoV2ID207
Raw data
Min-max
|
LAMP loop forward primer |
NB-LF |
CCATCTTGGACTGAGATCTTTCATT |
28573 - 28597 | N |
AATGAAAGATCTCAGTCCAAGATGG |
28644-28668 | 100.00 |
100.00 |
100.00 |
30 |
CoV2ID208
Raw data
Min-max
|
LAMP outer forward primer |
Lamb-F3 |
TCCAGATGAGGATGAAGAAGA |
3043 - 3063 | ORF1ab |
TCCAGATGAGGATGAAGAAGA |
3085-3105 | 0.00 |
0.00 |
96.26 |
30 |
CoV2ID209
Raw data
Min-max
|
LAMP outer backward primer |
Lamb-B3 |
AGTCTGAACAACTGGTGTAAG |
3311 - 3331 | ORF1ab |
CTTACACCAGTTGTTCAGACT |
3353-3373 | 100.00 |
100.00 |
100.00 |
30 |
CoV2ID210
Raw data
Min-max
|
LAMP forward inner primer |
Lamb-FIP |
AGAGCAGCAGAAGTGGCACAGGTGATTGTG(...) |
3064 - 3085 | ORF1ab |
AGGTGATTGTGAAGAAGAAGAG |
3106-3127 | 0.00 |
0.00 |
96.26 |
30 |
CoV2ID211
Raw data
Min-max
|
LAMP backward inner primer |
Lamb-BIP |
TCAACCTGAAGAAGAGCAAGAACTGATTGT(...) |
3242 - 3259 | ORF1ab |
GGCAGTGAGGACAATCAG |
3214-3235 | 0.00 |
0.00 |
97.94 |
30 |
CoV2ID212
Raw data
Min-max
|
LAMP loop forward primer |
Lamb-LF |
CTCATATTGAGTTGATGGCTCA |
3088 - 3109 | ORF1ab |
TGAGCCATCAACTCAATATGAG |
3130-3151 | 0.00 |
0.00 |
96.10 |
30 |
CoV2ID213
Raw data
Min-max
|
LAMP loop backward primer |
Lamb-LB |
ACAAACTGTTGGTCAACAAGAC |
3220 - 3241 | ORF1ab |
ACAAACTGTTGGTCAACAAGAC |
3262-3283 | 0.00 |
0.00 |
98.11 |
30 |
CoV2ID214
Raw data
Min-max
|
PCR primer forward |
PCR-C-fwd primer |
ACACTCTTTCCCTACACGACGCTCTTCCGA(...) |
29192 - 29214 | N |
TTTGCCCCCAGCGCTTCAGCGTT |
29263-29285 | 100.00 |
100.00 |
100.00 |
31 |
CoV2ID215
Raw data
Min-max
|
PCR primer reverse |
PCR-C-rev primer |
TGACTGGAGTTCAGACGTGTGCTCTTCCGA(...) |
29149 - 29172 | N |
CAGACAAGGAACTGATTACAAACA |
29220-29243 | 100.00 |
100.00 |
100.00 |
31 |
CoV2ID216
Raw data
Min-max
|
LAMP outer backward primer |
Wang_N_B3 |
TTTGGCCTTGTTGTTGTTGG |
28987 - 29006 | N |
CCAACAACAACAAGGCCAAA |
29058-29077 | 100.00 |
100.00 |
100.00 |
32 |
CoV2ID217
Raw data
Min-max
|
LAMP forward inner primer |
Wang_N_FIP |
TCCCCTACTGCTGCCTGGAGTTTTCGGCAG(...) |
28807 - 28824 | N |
CGGCAGTCAAGCCTCTTC |
28935-28956 | 95.45 |
100.00 |
99.91 |
32 |
CoV2ID218
Raw data
Min-max
|
LAMP backward inner primer |
Wang_N_BIP |
TCCTGCTAGAATGGCTGGCAATTTTTTTTG(...) |
28953 - 28973 | N |
TGAACCAGCTTGAGAGCAAAA |
28962-28983 | 100.00 |
100.00 |
100.00 |
32 |
CoV2ID219
Raw data
Min-max
|
LAMP loop backward primer |
Wang_N_LB |
GCGGTGATGCTGCTCT |
28914 - 28929 | N |
GCGGTGATGCTGCTCT |
28985-29000 | 93.75 |
80.00 |
99.88 |
32 |
CoV2ID220
Raw data
Min-max
|
RPA forward primer |
E-Sarbeco_F1_RPA |
GAAGAGACAGGTACGTTAATAGTTAATAGC(...) |
26263 - 26294 | E |
GAAGAGACAGGTACGTTAATAGTTAATAGC(...) |
26334-26365 | 100.00 |
100.00 |
100.00 |
33 |
CoV2ID221
Raw data
Min-max
|
RPA reverse primer |
E-Sarbeco-R2_RPA |
ACGTTAACAATATTGCAGCAGTACGCACAC(...) |
26360 - 26390 | E |
TGTGTGCGTACTGCTGCAATATTGTTAACG(...) |
26431-26461 | 100.00 |
100.00 |
100.00 |
33 |
CoV2ID222
Raw data
Min-max
|
RPA forward primer |
2019-nCoV_N2-F_RPA |
ACAAGGAACTGATTACAAACATTGGCCGCA(...) |
29152 - 29183 | N |
ACAAGGAACTGATTACAAACATTGGCCGCA(...) |
29223-29254 | 100.00 |
100.00 |
100.00 |
33 |
CoV2ID223
Raw data
Min-max
|
RPA reverse primer |
2019-nCoV_N2-R_RPA |
TTCCATGCCAATGCGCGACATTCCGAAGAA |
29213 - 29242 | N |
TTCTTCGGAATGTCGCGCATTGGCATGGAA |
29284-29313 | 96.67 |
100.00 |
99.94 |
33 |
CoV2ID224
Raw data
Min-max
|
PCR primer forward |
Lamb_orf1ab_F |
ATTTGGTGCCACTTCTGCTGC |
3148 - 3168 | ORF1ab |
ATTTGGTGCCACTTCTGCTGC |
3190-3210 | 0.00 |
0.00 |
96.44 |
34 |
CoV2ID225
Raw data
Min-max
|
PCR primer reverse |
Lamb_orf1ab_R |
TCACTGCCGTCTTGTTGACCA |
3229 - 3249 | ORF1ab |
TGGTCAACAAGACGGCAGTGA |
3271-3291 | 0.00 |
0.00 |
98.11 |
34 |
CoV2ID226
Raw data
Min-max
|
LAMP outer forward primer |
Yang_ORF1ab_F3 |
GTTACGATGGTGGCTGTA |
14885 - 14902 | ORF1ab |
GTTACGATGGTGGCTGTA |
14935-14952 | 0.00 |
0.00 |
98.11 |
35 |
CoV2ID227
Raw data
Min-max
|
LAMP outer backward primer |
Yang_ORF1ab_B3 |
CTCAAATGAATCTTAAGTATGCC |
15059 - 15081 | ORF1ab |
CTCAAATGAATCTTAAGTATGCC |
15109-15131 | 0.00 |
0.00 |
98.11 |
35 |
CoV2ID228
Raw data
Min-max
|
LAMP forward inner primer |
Yang_ORF1ab_FIP |
GCTAACCAAGTCATCGTCAATCCATTTAAT(...) |
14952 - 14976 | ORF1ab |
TCCATTTAATAAATGGGGTAAGGCT |
15002-15026 | 0.00 |
0.00 |
98.11 |
35 |
CoV2ID229
Raw data
Min-max
|
LAMP backward inner primer |
Yang_ORF1ab_BIP |
AATGAGTTATGAGGATCAAGATGCAACGTA(...) |
15035 - 15058 | ORF1ab |
AACGTAATGTCATCCCTACTATAA |
15044-15068 | 0.00 |
0.00 |
98.11 |
35 |
CoV2ID230
Raw data
Min-max
|
LAMP loop forward primer |
Yang_ORF1ab_LF |
ACCTAGACAAATCAGCTGGT |
14930 - 14949 | ORF1ab |
ACCTAGACAAATCAGCTGGT |
14980-14999 | 0.00 |
0.00 |
98.11 |
35 |
CoV2ID231
Raw data
Min-max
|
LAMP loop backward primer |
Yang_ORF1ab_LB |
CTTTTCGCATATACAAA |
15019 - 15035 | ORF1ab |
CTTTTCGCATATACAAA |
15069-15085 | 0.00 |
0.00 |
98.11 |
35 |
CoV2ID232
Raw data
Min-max
|
LAMP outer forward primer |
Yang_E_F3 |
AGCTGATGAGTACGAACTT |
26226 - 26244 | E |
AGCTGATGAGTACGAACTT |
26297-26315 | 100.00 |
100.00 |
100.00 |
35 |
CoV2ID233
Raw data
Min-max
|
LAMP outer backward primer |
Yang_E_B3 |
ACTCTCGTGTTAAAAATCTGAA |
26420 - 26441 | E |
ACTCTCGTGTTAAAAATCTGAA |
26491-26512 | 100.00 |
100.00 |
100.00 |
35 |
CoV2ID234
Raw data
Min-max
|
LAMP forward inner primer |
Yang_E_FIP |
TTCGTTTCGGAAGAGACAGTACTTCTTTTT(...) |
26293 - 26318 | E |
GTACTTCTTTTTCTTGCTTTCGTGGT |
26364-26389 | 100.00 |
100.00 |
100.00 |
35 |
CoV2ID235
Raw data
Min-max
|
LAMP backward inner primer |
Yang_E_BIP |
TTGCTAGTTACACTAGCCATCCTTACGTGA(...) |
26387 - 26406 | E |
ACGTGAGTCTTGTAAAACCT |
26394-26419 | 96.15 |
80.00 |
99.86 |
35 |
CoV2ID236
Raw data
Min-max
|
LAMP loop forward primer |
Yang_E_LF |
GTACGTTAATAGTTAATAGCG |
26273 - 26293 | E |
GTACGTTAATAGTTAATAGCG |
26344-26364 | 100.00 |
100.00 |
100.00 |
35 |
CoV2ID237
Raw data
Min-max
|
LAMP loop backward primer |
Yang_E_LB |
GCGCTTCGATTGTGTGC |
26350 - 26366 | E |
GCGCTTCGATTGTGTGC |
26421-26437 | 94.12 |
80.00 |
99.89 |
35 |
CoV2ID238
Raw data
Min-max
|
LAMP forward inner primer |
Yang_N_FIP |
CAATGCTGCAATCGTGCTACGCTTCTACGC(...) |
28782 - 28802 | N |
GCTTCTACGCAGAAGGGAGCA |
28853-28873 | 95.24 |
100.00 |
99.91 |
35 |
CoV2ID239
Raw data
Min-max
|
LAMP backward inner primer |
Yang_N_BIP |
GGCGGCAGTCAAGCCTCTTCAACTCCAGGC(...) |
28861 - 28882 | N |
TTCAACTCCAGGCAGCAGTAGG |
28932-28953 | 90.91 |
80.00 |
99.74 |
35 |
CoV2ID240
Raw data
Min-max
|
LAMP loop forward primer |
Yang_N_LF |
CTTCCTCAAGGAACAAC |
28754 - 28770 | N |
CTTCCTCAAGGAACAAC |
28825-28841 | 100.00 |
100.00 |
100.00 |
35 |
CoV2ID241
Raw data
Min-max
|
LAMP loop backward primer |
Yang_N_LB |
ACGTAGTCGCAACAGTTCAAGAAATT |
28837 - 28862 | N |
ACGTAGTCGCAACAGTTCAAGAAATT |
28908-28933 | 96.15 |
100.00 |
99.72 |
35 |
CoV2ID242
Raw data
Min-max
|
LAMP outer forward primer |
Orf1a-A-F3 |
CTGCACCTCATGGTCATGTT |
498 - 517 | ORF1ab |
CTGCACCTCATGGTCATGTT |
510-529 | 0.00 |
0.00 |
96.19 |
36 |
CoV2ID243
Raw data
Min-max
|
LAMP outer backward primer |
Orf1a-A-B3 |
AGCTCGTCGCCTAAGTCAA |
693 - 711 | ORF1ab |
TTGACTTAGGCGACGAGCT |
705-723 | 89.47 |
60.00 |
99.80 |
36 |
CoV2ID244
Raw data
Min-max
|
LAMP forward inner primer |
Orf1a-A-FIP |
GAGGGACAAGGACACCAAGTGTATGGTTGA(...) |
517 - 537 | ORF1ab |
TATGGTTGAGCTGGTAGCAGA |
584-605 | 68.18 |
100.00 |
99.40 |
36 |
CoV2ID245
Raw data
Min-max
|
LAMP backward inner primer |
Orf1a-A-BIP |
CCAGTGGCTTACCGCAAGGTTTTAGATCGG(...) |
669 - 687 | ORF1ab |
GTTACGGCGCCGATCTAAA |
620-640 | 95.24 |
100.00 |
99.82 |
36 |
CoV2ID246
Raw data
Min-max
|
LAMP loop forward primer |
Orf1a-A-LF |
CCGTACTGAATGCCTTCGAGT |
538 - 558 | ORF1ab |
ACTCGAAGGCATTCAGTACGG |
550-570 | 0.00 |
0.00 |
98.11 |
36 |
CoV2ID247
Raw data
Min-max
|
LAMP loop backward primer |
Orf1a-A-LB |
TTCGTAAGAACGGTAATAAAGGAGC |
633 - 657 | ORF1ab |
TTCGTAAGAACGGTAATAAAGGAGC |
645-669 | 96.00 |
100.00 |
99.92 |
36 |
CoV2ID248
Raw data
Min-max
|
LAMP outer forward primer |
Orf1a-B-F3 |
TCATCAAACGTTCGGATGCT |
474 - 493 | ORF1ab |
TCATCAAACGTTCGGATGCT |
486-505 | 0.00 |
0.00 |
97.93 |
36 |
CoV2ID249
Raw data
Min-max
|
LAMP outer backward primer |
Orf1a-B-B3 |
TATGGCCACCAGCTCCTT |
651 - 668 | ORF1ab |
AAGGAGCTGGTGGCCATA |
663-680 | 94.44 |
80.00 |
99.90 |
36 |
CoV2ID250
Raw data
Min-max
|
LAMP forward inner primer |
Orf1a-B-FIP |
CGACCGTACTGAATGCCTTCGAGAACTGCA(...) |
495 - 514 | ORF1ab |
GAACTGCACCTCATGGTCAT |
551-573 | 0.00 |
0.00 |
98.11 |
36 |
CoV2ID251
Raw data
Min-max
|
LAMP backward inner primer |
Orf1a-B-BIP |
AGACACTTGGTGTCCTTGTCCCAGAAGAAC(...) |
614 - 633 | ORF1ab |
GCTTACCGCAAGGTTCTTCT |
582-603 | 59.09 |
0.00 |
99.23 |
36 |
CoV2ID252
Raw data
Min-max
|
LAMP loop forward primer |
Orf1a-B-LF |
CTGCTACCAGCTCAACCATAAC |
515 - 536 | ORF1ab |
GTTATGGTTGAGCTGGTAGCAG |
527-548 | 0.00 |
0.00 |
96.78 |
36 |
CoV2ID253
Raw data
Min-max
|
LAMP loop backward primer |
Orf1a-B-LB |
TCATGTGGGCGAAATACCAGT |
592 - 612 | ORF1ab |
TCATGTGGGCGAAATACCAGT |
604-624 | 100.00 |
100.00 |
100.00 |
36 |
CoV2ID254
Raw data
Min-max
|
LAMP outer backward primer |
Orf1a-C-B3 |
GATCAGTGCCAAGCTCGTC |
704 - 722 | ORF1ab |
GACGAGCTTGGCACTGATC |
716-734 | 100.00 |
100.00 |
100.00 |
36 |
CoV2ID255
Raw data
Min-max
|
LAMP forward inner primer |
Orf1a-C-FIP |
GAGGGACAAGGACACCAAGTGTGGTAGCAG(...) |
528 - 547 | ORF1ab |
TGGTAGCAGAACTCGAAGGC |
584-605 | 68.18 |
100.00 |
99.40 |
36 |
CoV2ID256
Raw data
Min-max
|
LAMP loop forward primer |
Orf1a-C-LF |
ACCACTACGACCGTACTGAAT |
548 - 568 | ORF1ab |
ATTCAGTACGGTCGTAGTGGT |
560-580 | 0.00 |
0.00 |
98.11 |
36 |
CoV2ID257
Raw data
Min-max
|
LAMP outer forward primer |
Zhu_Orf1ab_F3 |
GGATTTTGTGACTTAAAAGGTAAG |
13286 - 13309 | ORF1ab |
GGATTTTGTGACTTAAAAGGTAAG |
13336-13359 | 100.00 |
100.00 |
100.00 |
37 |
CoV2ID258
Raw data
Min-max
|
LAMP outer backward primer |
Zhu_Orf1ab_B3 |
GGTTTGCGGTGTAAGTGCAGCCCGT |
13470 - 13494 | ORF1ab |
GGTTTGCGGTGTAAGTGCAGCCCGT |
13520-13544 | 96.00 |
100.00 |
99.92 |
37 |
CoV2ID259
Raw data
Min-max
|
LAMP forward inner primer |
Zhu_Orf1ab_FIP |
TGTACAAATACCTACAACTTGTGACACTTA(...) |
13355 - 13379 | ORF1ab |
ACACTTAAAAACACAGTCTGTACCG |
13405-13429 | 100.00 |
100.00 |
100.00 |
37 |
CoV2ID260
Raw data
Min-max
|
LAMP backward inner primer |
Zhu_Orf1ab_BIP |
TCTGCGGTATGTGGAAAGGTTATGCTGATG(...) |
13445 - 13462 | ORF1ab |
GCTGATGCACAATCGTTT |
13430-13453 | 91.67 |
100.00 |
99.84 |
37 |
CoV2ID261
Raw data
Min-max
|
LAMP loop forward primer |
Zhu_Orf1ab_LF |
CTAATGACCCTGTGGGTTT |
13335 - 13353 | ORF1ab |
CTAATGACCCTGTGGGTTT |
13385-13403 | 100.00 |
100.00 |
100.00 |
37 |
CoV2ID262
Raw data
Min-max
|
LAMP loop backward primer |
Zhu_Orf1ab_LB |
GAACCCATGCTTCAGTC |
13427 - 13443 | ORF1ab |
GAACCCATGCTTCAGTC |
13477-13493 | 94.12 |
80.00 |
99.89 |
37 |
CoV2ID263
Raw data
Min-max
|
LAMP outer forward primer |
Zhu_N_F3 |
CTACCTAGGAACTGGGCC |
28606 - 28623 | N |
CTACCTAGGAACTGGGCC |
28677-28694 | 100.00 |
100.00 |
100.00 |
37 |
CoV2ID264
Raw data
Min-max
|
LAMP outer backward primer |
Zhu_N_B3 |
GGCAGTCAAGCCTCTTCT |
28808 - 28825 | N |
GGCAGTCAAGCCTCTTCT |
28879-28896 | 100.00 |
100.00 |
100.00 |
37 |
CoV2ID265
Raw data
Min-max
|
LAMP forward inner primer |
Zhu_N_FIP |
CCTATGGTGCTAACAAAGACTGAGGGAGCC(...) |
28676 - 28698 | N |
ACTGAGGGAGCCTTGAATACACC |
28747-28769 | 100.00 |
100.00 |
100.00 |
37 |
CoV2ID266
Raw data
Min-max
|
LAMP backward inner primer |
Zhu_N_BIP |
AATCCTGCTAACAATGCTGCAATCCTACGC(...) |
28786 - 28803 | N |
CTACGCAGAAGGGAGCAG |
28792-28815 | 100.00 |
100.00 |
100.00 |
37 |
CoV2ID267
Raw data
Min-max
|
LAMP loop forward primer |
Zhu_N_LF |
GCATCATATGGGTTGCAAC |
28659 - 28677 | N |
GCATCATATGGGTTGCAAC |
28730-28748 | 100.00 |
100.00 |
100.00 |
37 |
CoV2ID268
Raw data
Min-max
|
LAMP loop backward primer |
Zhu_N_LB |
CTTCCTCAAGGAACAACAT |
28754 - 28772 | N |
CTTCCTCAAGGAACAACAT |
28825-28843 | 100.00 |
100.00 |
100.00 |
37 |
CoV2ID269
Raw data
Min-max
|
PCR primer forward |
Amrane_S_F |
AAACTTGTGCCCTTTTGGTG |
22561 - 22580 | S |
AAACTTGTGCCCTTTTGGTG |
22632-22651 | 0.00 |
0.00 |
98.11 |
38 |
CoV2ID270
Raw data
Min-max
|
PCR primer reverse |
Amrane_S_R |
TGCTGATTCTCTTCCTGTTCC |
22620 - 22640 | S |
GGAACAGGAAGAGAATCAGCA |
22691-22711 | 0.00 |
0.00 |
98.11 |
38 |
CoV2ID271
Raw data
Min-max
|
Probe |
Amrane_S_P |
CGCCACCAGATTTGCATCTG |
22591 - 22610 | S |
CGCCACCAGATTTGCATCTG |
22662-22681 | 0.00 |
0.00 |
98.11 |
38 |
CoV2ID272
Raw data
Min-max
|
PCR primer forward |
Wu_For |
ATGGGTTGGGATTATCCTAAATGTGA |
15283 - 15308 | ORF1ab |
ATGGGTTGGGATTATCCTAAATGTGA |
15333-15358 | 0.00 |
0.00 |
98.11 |
39 |
CoV2ID273
Raw data
Min-max
|
PCR primer reverse |
Wu_Rev |
AGCAGTTGTGGCATCTCCTGATGAG |
15480 - 15504 | ORF1ab |
CTCATCAGGAGATGCCACAACTGCT |
15530-15554 | 100.00 |
100.00 |
100.00 |
39 |
CoV2ID274
Raw data
Min-max
|
Probe |
MGB Probe |
ATGCTTAGAATTATGGCCTCAC |
15325 - 15346 | ORF1ab |
ATGCTTAGAATTATGGCCTCAC |
15375-15396 | 22.73 |
100.00 |
98.54 |
39 |
CoV2ID275
Raw data
Min-max
|
PCR primer forward |
short_N_spk_2_F |
AAGACGGCATCATATGGGTTGC |
28653 - 28674 | N |
AAGACGGCATCATATGGGTTGC |
28724-28745 | 95.45 |
100.00 |
99.83 |
40 |
CoV2ID276
Raw data
Min-max
|
PCR primer reverse |
short_N_spk_1_R |
GGCAATGTTGTTCCTTGAGGAAG |
28754 - 28776 | N |
CTTCCTCAAGGAACAACATTGCC |
28825-28847 | 100.00 |
100.00 |
100.00 |
40 |
CoV2ID277
Raw data
Min-max
|
LAMP outer forward primer |
Yu_orf1ab_F3 |
CCACTAGAGGAGCTACTGTA |
15182 - 15201 | ORF1ab |
CCACTAGAGGAGCTACTGTA |
15232-15251 | 0.00 |
0.00 |
98.02 |
41 |
CoV2ID278
Raw data
Min-max
|
LAMP outer backward primer |
Yu_orf1ab_B3 |
TGACAAGCTACAACACGT |
15370 - 15387 | ORF1ab |
ACGTGTTGTAGCTTGTCA |
15420-15437 | 100.00 |
100.00 |
100.00 |
41 |
CoV2ID279
Raw data
Min-max
|
LAMP forward inner primer |
Yu_orf1ab_FIP |
AGGTGAGGGTTTTCTACATCACTATATTGG(...) |
15205 - 15227 | ORF1ab |
ATTGGAACAAGCAAATTCTATGG |
15306-15331 | 0.00 |
0.00 |
98.11 |
41 |
CoV2ID280
Raw data
Min-max
|
LAMP backward inner primer |
Yu_orf1ab_BIP |
ATGGGTTGGGATTATCCTAAATGTGTGCGA(...) |
15344 - 15361 | ORF1ab |
CACTTGTTCTTGCTCGCA |
15333-15357 | 0.00 |
0.00 |
98.11 |
41 |
CoV2ID281
Raw data
Min-max
|
LAMP loop forward primer |
Yu_orf1ab_LF |
CAGTTTTTAACATGTTGTGCCAACC |
15229 - 15253 | ORF1ab |
GGTTGGCACAACATGTTAAAAACTG |
15279-15303 | 0.00 |
0.00 |
98.11 |
41 |
CoV2ID282
Raw data
Min-max
|
LAMP loop backward primer |
Yu_orf1ab_LB |
ATAGAGCCATGCCTAACATGCTT |
15308 - 15330 | ORF1ab |
ATAGAGCCATGCCTAACATGCTT |
15358-15380 | 0.00 |
0.00 |
97.95 |
41 |
CoV2ID283
Raw data
Min-max
|
PCR primer forward |
M-475-F |
TGTGACATCAAGGACCTGCC |
26997 - 27016 | M |
TGTGACATCAAGGACCTGCC |
27068-27087 | 100.00 |
100.00 |
100.00 |
42 |
CoV2ID284
Raw data
Min-max
|
PCR primer reverse |
M-574-R |
CTGAGTCACCTGCTACACGC |
27077 - 27096 | M |
GCGTGTAGCAGGTGACTCAG |
27148-27167 | 100.00 |
100.00 |
100.00 |
42 |
CoV2ID285
Raw data
Min-max
|
Probe |
M-507-P |
TGTTGCTACATCACGAACGC |
27029 - 27048 | M |
TGTTGCTACATCACGAACGC |
27100-27119 | 100.00 |
100.00 |
100.00 |
42 |
CoV2ID286
Raw data
Min-max
|
PCR primer forward |
S-1850-F |
GCACAGAAGTCCCTGTTGCT |
23412 - 23431 | S |
GCACAGAAGTCCCTGTTGCT |
23483-23502 | 100.00 |
100.00 |
100.00 |
42 |
CoV2ID287
Raw data
Min-max
|
PCR primer reverse |
S-1949-R |
AAACAGCCTGCACGTGTTTG |
23492 - 23511 | S |
CAAACACGTGCAGGCTGTTT |
23563-23582 | 45.00 |
100.00 |
98.96 |
42 |
CoV2ID288
Raw data
Min-max
|
Probe |
S-1884-P |
ACTTACTCCTACTTGGCGTGT |
23446 - 23466 | S |
ACTTACTCCTACTTGGCGTGT |
23517-23537 | 100.00 |
100.00 |
100.00 |
42 |
CoV2ID289
Raw data
Min-max
|
LAMP outer forward primer |
S1-F3 |
AGTTTGAGCCATCAACTCA |
3084 - 3102 | ORF1ab |
AGTTTGAGCCATCAACTCA |
3126-3144 | 0.00 |
0.00 |
96.07 |
43 |
CoV2ID290
Raw data
Min-max
|
LAMP outer backward primer |
S1-B3 |
TGAACCTCAACAATTGTTTGA |
3271 - 3291 | ORF1ab |
TCAAACAATTGTTGAGGTTCA |
3313-3333 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID291
Raw data
Min-max
|
LAMP forward inner primer |
S1-F1P |
CAGGTTGAAGAGCAGCAGAAGTGTACTGAA(...) |
3114 - 3135 | ORF1ab |
GTACTGAAGATGATTACCAAGG |
3199-3221 | 0.00 |
0.00 |
97.15 |
43 |
CoV2ID292
Raw data
Min-max
|
LAMP backward inner primer |
S1-B1P |
AGCAAGAAGAAGATTGGTTAGATGATGTCT(...) |
3244 - 3262 | ORF1ab |
CAGTGAGGACAATCAGACA |
3228-3254 | 0.00 |
0.00 |
98.11 |
43 |
CoV2ID293
Raw data
Min-max
|
LAMP loop forward primer |
S1-LPF |
GGCACCAAATTCCAAAGGT |
3139 - 3157 | ORF1ab |
ACCTTTGGAATTTGGTGCC |
3181-3199 | 0.00 |
0.00 |
96.07 |
43 |
CoV2ID294
Raw data
Min-max
|
LAMP loop backward primer |
S1-LPB |
AACTGTTGGTCAACAAGACGG |
3223 - 3243 | ORF1ab |
AACTGTTGGTCAACAAGACGG |
3265-3285 | 0.00 |
0.00 |
98.11 |
43 |
CoV2ID295
Raw data
Min-max
|
LAMP outer forward primer |
S2-F3 |
ATTCTAAGCACACGCCTAT |
22173 - 22191 | S |
ATTCTAAGCACACGCCTAT |
22244-22262 | 0.00 |
0.00 |
96.26 |
43 |
CoV2ID296
Raw data
Min-max
|
LAMP outer backward primer |
S2-B3 |
GAAGATAACCCACATAATAAGCT |
22351 - 22373 | S |
AGCTTATTATGTGGGTTATCTTC |
22422-22444 | 0.00 |
0.00 |
92.67 |
43 |
CoV2ID297
Raw data
Min-max
|
LAMP forward inner primer |
S2-F1P |
ACCTATTGGCAAATCTACCAATGGTTTAGT(...) |
22195 - 22213 | S |
TTTAGTGCGTGATCTCCCT |
22304-22329 | 0.00 |
0.00 |
96.26 |
43 |
CoV2ID298
Raw data
Min-max
|
LAMP backward inner primer |
S2-B1P |
ATCACTAGGTTTCAAACTTTACTTGCCTGT(...) |
22322 - 22140 | S |
TCTTCTTCAGGTTGGACAG |
22336-22361 | 0.00 |
0.00 |
96.26 |
43 |
CoV2ID299
Raw data
Min-max
|
LAMP loop forward primer |
S2-LPF |
TTCTAAAGCCGAAAAACCCTG |
22214 - 22234 | S |
CAGGGTTTTTCGGCTTTAGAA |
22285-22305 | 0.00 |
0.00 |
96.17 |
43 |
CoV2ID300
Raw data
Min-max
|
LAMP loop backward primer |
S2-LPB |
CATAGAAGTTATTTGACTCCTGGTG |
22295 - 22319 | S |
CATAGAAGTTATTTGACTCCTGGTG |
22366-22390 | 0.00 |
0.00 |
96.19 |
43 |
CoV2ID301
Raw data
Min-max
|
LAMP outer forward primer |
S3-F3 |
CACCTTATGGGTTGGGATT |
15277 - 15295 | ORF1ab |
CACCTTATGGGTTGGGATT |
15327-15345 | 0.00 |
0.00 |
98.11 |
43 |
CoV2ID302
Raw data
Min-max
|
LAMP outer backward primer |
S3-B3 |
AACATATAGTGAACCGCCA |
15447 - 15465 | ORF1ab |
TGGCGGTTCACTATATGTT |
15497-15515 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID303
Raw data
Min-max
|
LAMP forward inner primer |
S3-F1P |
GTTTGCGAGCAAGAACAAGTGAATGTGATA(...) |
15302 - 15320 | ORF1ab |
AATGTGATAGAGCCATGCC |
15393-15414 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID304
Raw data
Min-max
|
LAMP backward inner primer |
S3-B1P |
ATACAACGTGTTGTAGCTTGTCACACATGA(...) |
15427 - 15448 | ORF1ab |
TTGAGTGAAATGGTCATGTGTG |
15415-15440 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID305
Raw data
Min-max
|
LAMP loop forward primer |
S3-LPF |
GGCCATAATTCTAAGCATGTTA |
15321 - 15342 | ORF1ab |
TAACATGCTTAGAATTATGGCC |
15371-15392 | 4.55 |
20.00 |
98.03 |
43 |
CoV2ID306
Raw data
Min-max
|
LAMP loop backward primer |
S3-LPB |
ATTAGCTAATGAGTGTGCTCAAGTA |
15402 - 15426 | ORF1ab |
ATTAGCTAATGAGTGTGCTCAAGTA |
15452-15476 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID307
Raw data
Min-max
|
LAMP outer forward primer |
S4-F3 |
ACATGCTTAGAATTATGGCC |
15323 - 15342 | ORF1ab |
ACATGCTTAGAATTATGGCC |
15373-15392 | 5.00 |
20.00 |
98.02 |
43 |
CoV2ID308
Raw data
Min-max
|
LAMP outer backward primer |
S4-B3 |
GCTTGACAAATGTTAAAAACACT |
15514 - 15536 | ORF1ab |
AGTGTTTTTAACATTTGTCAAGC |
15564-15586 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID309
Raw data
Min-max
|
LAMP forward inner primer |
S4-F1P |
TTGAGCACACTCATTAGCTAATCTATCACT(...) |
15343 - 15361 | ORF1ab |
TCACTTGTTCTTGCTCGCA |
15448-15473 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID310
Raw data
Min-max
|
LAMP backward inner primer |
S4-B1P |
GAGTGAAATGGTCATGTGTGGCGCATAAGC(...) |
15492 - 15509 | ORF1ab |
TGCCACAACTGCTTATGC |
15479-15501 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID311
Raw data
Min-max
|
LAMP loop forward primer |
S4-LPF |
GACAAGCTACAACACGTTGTATGT |
15363 - 15386 | ORF1ab |
ACATACAACGTGTTGTAGCTTGTC |
15413-15436 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID312
Raw data
Min-max
|
LAMP loop backward primer |
S4-LPB |
ACTATATGTTAAACCAGGTGGAACC |
15456 - 15480 | ORF1ab |
ACTATATGTTAAACCAGGTGGAACC |
15506-15530 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID313
Raw data
Min-max
|
LAMP outer forward primer |
S5-F3 |
ATGGCCTCACTTGTTCTT |
15337 - 15354 | ORF1ab |
ATGGCCTCACTTGTTCTT |
15387-15404 | 72.22 |
100.00 |
99.48 |
43 |
CoV2ID314
Raw data
Min-max
|
LAMP outer backward primer |
S5-B3 |
TAACATTGGCCGTGACAG |
15536 - 15553 | ORF1ab |
CTGTCACGGCCAATGTTA |
15586-15603 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID315
Raw data
Min-max
|
LAMP forward inner primer |
S5-F1P |
TTGAGCACACTCATTAGCTAATCTATGCTC(...) |
15354 - 15372 | ORF1ab |
TGCTCGCAAACATACAACG |
15448-15473 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID316
Raw data
Min-max
|
LAMP backward inner primer |
S5-B1P |
GTCATGTGTGGCGGTTCACTACACTATTAG(...) |
15497 - 15518 | ORF1ab |
CAACTGCTTATGCTAATAGTGT |
15547-15568 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID317
Raw data
Min-max
|
LAMP loop forward primer |
S5-LPF |
ACGGTGTGACAAGCTACAACA |
15373 - 15393 | ORF1ab |
TGTTGTAGCTTGTCACACCGT |
15423-15443 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID318
Raw data
Min-max
|
LAMP loop backward primer |
S5-LPB |
CCAGGTGGAACCTCATCAGGAG |
15469- 15490 | ORF1ab |
CCAGGTGGAACCTCATCAGGAG |
15519-15540 | 100.00 |
100.00 |
100.00 |
43 |
CoV2ID319
Raw data
Min-max
|
PCR primer forward |
Smyrlaki_N1_F |
GACCCCAAAATCAGCGAA |
28287 - 28304 | N |
GACCCCAAAATCAGCGAA |
28358-28375 | 100.00 |
100.00 |
100.00 |
44 |
CoV2ID320
Raw data
Min-max
|
PCR primer forward |
Smyrlaki_E_F |
GGAAGAGACAGGTACGTTAATA |
26262 - 26283 | E |
GGAAGAGACAGGTACGTTAATA |
26333-26354 | 100.00 |
100.00 |
100.00 |
44 |
CoV2ID321
Raw data
Min-max
|
PCR primer reverse |
Smyrlaki_E_R |
AGCAGTACGCACACAATCGAA |
26354 - 26374 | E |
TTCGATTGTGTGCGTACTGCT |
26425-26445 | 95.24 |
80.00 |
99.91 |
44 |
CoV2ID322
Raw data
Min-max
|
PCR primer forward |
Smyrlaki_RdRP_F |
GTCATGTGTGGCGGTTCACT |
15439 - 15458 | ORF1ab |
GTCATGTGTGGCGGTTCACT |
15489-15508 | 100.00 |
100.00 |
100.00 |
44 |
CoV2ID323
Raw data
Min-max
|
PCR primer reverse |
Smyrlaki_RdRP_R |
CAACACTATTAGCATAAGCAGTTGT |
15519 - 15496 | ORF1ab |
ACAACTGCTTATGCTAATAGTGTT |
15546-15569 | 100.00 |
100.00 |
100.00 |
44 |
CoV2ID324
Raw data
Min-max
|
PCR primer forward |
Li_S_F |
TGTACTTGGACAATCAAAAAGAGTTGAT |
24658 - 24685 | S |
TGTACTTGGACAATCAAAAAGAGTTGAT |
24729-24756 | 100.00 |
100.00 |
100.00 |
45 |
CoV2ID325
Raw data
Min-max
|
PCR primer reverse |
Li_S_R |
AGGAGCAGTTGTGAAGTTCTTTTC |
24776 - 24799 | S |
GAAAAGAACTTCACAACTGCTCCT |
24847-24870 | 0.00 |
0.00 |
98.11 |
45 |
CoV2ID326
Raw data
Min-max
|
gRNA |
N-gene gRNA #1 |
UAAUUUCUACUAAGUGUAGAUCCCCCAGCG(...) |
29196 - 29215 | N |
CCCCCAGCGCTTCAGCGTTC |
29267-29286 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID327
Raw data
Min-max
|
gRNA |
E-gene gRNA #2 |
UAAUUUCUACUAAGUGUAGAUGUGGUAUUC(...) |
26314 - 26333 | E |
GTGGTATTCTTGCTAGTTAC |
26385-26404 | 95.00 |
100.00 |
99.81 |
10 |
CoV2ID328
Raw data
Min-max
|
gRNA |
N-gene gRNA #2 |
UAAUUUCUACUAAGUGUAGAUGCAAUGUUG(...) |
28756 - 28775 | N |
TCCTCAAGGAACAACATTGC |
28827-28846 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID329
Raw data
Min-max
|
gRNA |
E-gene gRNA #1 |
UAAUUUCUACUAAGUGUAGAUUUGCUUUCG(...) |
26306 - 26325 | E |
TTGCTTTCGTGGTATTCTTG |
26377-26396 | 100.00 |
100.00 |
100.00 |
10 |
CoV2ID330
Raw data
Min-max
|
PCR primer forward |
SARS-CoV-2-15283-F |
ATGGGTTGGGATTATCCTAAATG |
15283 - 15305 | ORF1ab |
ATGGGTTGGGATTATCCTAAATG |
15333-15355 | 0.00 |
0.00 |
98.11 |
46 |
CoV2ID331
Raw data
Min-max
|
PCR primer reverse |
SARS-CoV-2-15887-R |
TGTTGAGAGCAAAATTCATG |
15868 - 15887 | ORF1ab |
CATGAATTTTGCTCTCAACA |
15920-15939 | 0.00 |
0.00 |
98.11 |
46 |
CoV2ID332
Raw data
Min-max
|
PCR primer forward |
SARS-CoV-2-15286-F |
GGTTGGGATTATCCTAAATGTGA |
15286 - 15308 | ORF1ab |
GGTTGGGATTATCCTAAATGTGA |
15336-15358 | 0.00 |
0.00 |
98.11 |
46 |
CoV2ID333
Raw data
Min-max
|
PCR primer reverse |
SARS-CoV-2-15725-R |
GCATCGTCAGAGAGTATCATCAT |
15703 - 15725 | ORF1ab |
ATGATGATACTCTCTGACGATGC |
15753-15775 | 100.00 |
100.00 |
100.00 |
46 |
CoV2ID334
Raw data
Min-max
|
PCR primer forward |
Wuhan-TM2020For |
TCGTGCTACAACTTCCTCAAG |
28743 - 28763 | N |
TCGTGCTACAACTTCCTCAAG |
28814-28834 | 100.00 |
100.00 |
100.00 |
47 |
CoV2ID335
Raw data
Min-max
|
PCR Probe |
Wuhan-TM2020Probe |
CCGCCTCTGCTCCCTTCTGC |
28790 - 28809 | N |
GCAGAAGGGAGCAGAGGCGG |
28861-28880 | 95.00 |
100.00 |
99.91 |
47 |
CoV2ID336
Raw data
Min-max
|
PCR primer reverse |
SARS2-28875R-G |
CTGCCTGGAGTTGAATTTCTTG |
28854 - 28875 | N |
CAAGAAATTCAACTCCAGGCAG |
28925-28946 | 90.91 |
80.00 |
99.49 |
47 |
CoV2ID337
Raw data
Min-max
|
PCR primer reverse |
SARS2-28875R-A |
CTGCCTGGAGTTGAATTTCTTA |
28854 -28875 | N |
CAAGAAATTCAACTCCAGGCAG |
28926-28946 | 95.24 |
100.00 |
99.82 |
47 |
CoV2ID338
Raw data
Min-max
|
LAMP outer forward primer |
ORF7a-F3 |
TCTTGGCACTGATAACACTC |
27410 - 27429 | ORF7a |
TCTTGGCACTGATAACACTC |
27481-27500 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID339
Raw data
Min-max
|
LAMP outer backward primer |
ORF7a-B3 |
GATCTGGCACGTAACTGAT |
27617 - 27635 | ORF7a |
ATCAGTTACGTGCCAGATC |
27688-27706 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID340
Raw data
Min-max
|
LAMP forward inner primer |
ORF7a-FIP |
TCCAGAAGAGCAAGGTTCTTTTAAAGCTAC(...) |
27430 - 27451 | ORF7a |
GCTACTTGTGAGCTTTATCACT |
27554-27578 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID341
Raw data
Min-max
|
LAMP backward inner primer |
ORF7a-BIP |
AGCTGATAACAAATTTGCACTGACGTTTTA(...) |
27593 - 27610 | ORF7a |
GTCCTGACGGCGTAAAAC |
27611-27634 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID342
Raw data
Min-max
|
LAMP loop forward primer |
ORF7a-LF |
GTTGTACCTCTAACACACTCTTGGT |
27452 - 27476 | ORF7a |
ACCAAGAGTGTGTTAGAGGTACAAC |
27523-27547 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID343
Raw data
Min-max
|
LAMP loop backward primer |
ORF7a-LB |
GCTTTAGCACTCAATTTGCTTTTGC |
27566 - 27590 | ORF7a |
GCTTTAGCACTCAATTTGCTTTTGC |
27637-27661 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID344
Raw data
Min-max
|
LAMP LAMP outer forward primer |
M-GENE-F3 |
AGTAATAGGTTTCCTATTCCTTAC |
26588 - 26611 | M |
AGTAATAGGTTTCCTATTCCTTAC |
26659-26682 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID345
Raw data
Min-max
|
LAMP LAMP outer backward prime(...) |
M-GENE-B3 |
AGCCACATCAAGCCTACA |
26783 - 26800 | M |
TGTAGGCTTGATGTGGCT |
26854-26871 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID346
Raw data
Min-max
|
LAMP forward inner primer |
M-GENE-FIP |
GCCATAACAGCCAGACCAAAATTAATGGAT(...) |
26613 - 26635 | M |
ATGGATTTGTCTTCTACAATTTGC |
26683-26706 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID347
Raw data
Min-max
|
LAMP backward inner primer |
M-GENE-BIP |
TTAGCTTGTTTTGTGCTTGCTGACAAGCCA(...) |
267763 - 26780 | M |
GCTATCGCAATGGCTTGT |
26777-26798 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID348
Raw data
Min-max
|
LAMP loop forward primer |
M-GENE-LF |
CAAAAACCTATTCCTGTTGGCATAG |
26636 - 26660 | M |
CTATGCCAACAGGAATAGGTTTTTG |
26707-26731 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID349
Raw data
Min-max
|
LAMP loop backward primer |
M-GENE-LB |
CAGAATAAATTGGATCACCGGTGGA |
26735 - 26759 | M |
CAGAATAAATTGGATCACCGGTGGA |
26806-26830 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID350
Raw data
Min-max
|
LAMP loop backward primer |
M-GENE-LB-2 |
GAATAAATTGGATCACCGGTGGA |
26737 - 26759 | M |
GAATAAATTGGATCACCGGTGGA |
26808-26830 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID351
Raw data
Min-max
|
LAMP LAMP outer forward primer |
ORF3a-A-F3 |
CACTTCAGACTATTACCAGCT |
26013 - 26033 | ORF3a |
CACTTCAGACTATTACCAGCT |
26084-26104 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID352
Raw data
Min-max
|
LAMP LAMP outer backward prime(...) |
ORF3a-A-B3 |
GCTTGTGCTTACAAAGGC |
26211 - 26228 | ORF3a |
GCCTTTGTAAGCACAAGC |
26282-26299 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID353
Raw data
Min-max
|
LAMP forward inner primer |
ORF3a-A-FIP |
GTTCTTCAGGCTCATCAACAATTTTCTCAA(...) |
26037 - 26059 | ORF3a |
CTCAACTCAATTGAGTACAGACA |
26166-26190 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID354
Raw data
Min-max
|
LAMP backward inner primer |
ORF3a-A-BIP |
CCAAATTCACACAATCGACGGTTTAGTAGT(...) |
26189 - 26206 | ORF3a |
AACCGACGACGACTACTA |
26195-26217 | 95.65 |
100.00 |
99.46 |
48 |
CoV2ID355
Raw data
Min-max
|
LAMP loop forward primer |
ORF3a-A-LF |
TGAAGAAGGTAACATGTTCAACACC |
26062 - 26086 | ORF3a |
GGTGTTGAACATGTTACCTTCTTCA |
26133-26157 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID356
Raw data
Min-max
|
LAMP loop backward primer |
ORF3a-A-LB |
CGGAGTTGTTAATCCAGTAATGGAA |
26151 - 26175 | ORF3a |
CGGAGTTGTTAATCCAGTAATGGAA |
26222-26246 | 84.00 |
100.00 |
99.70 |
48 |
CoV2ID357
Raw data
Min-max
|
LAMP LAMP outer forward primer |
ORF3a-B-F3 |
ATTTTGTTCGCGCTACTG |
25472 - 25489 | ORF3a |
ATTTTGTTCGCGCTACTG |
25543-25560 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID358
Raw data
Min-max
|
LAMP LAMP outer backward prime(...) |
ORF3a-B-B3 |
ACGAGCAAAAGGTGTGAG |
25665 - 25682 | ORF3a |
CTCACACCTTTTGCTCGT |
25736-25753 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID359
Raw data
Min-max
|
LAMP forward inner primer |
ORF3a-B-FIP |
CTCTGAAAAACAGCAAGAAGAGCAAGATAC(...) |
25494- 25513 | ORF3a |
GATACCGATACAAGCCTCAC |
25560-25584 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID360
Raw data
Min-max
|
LAMP backward inner primer |
ORF3a-B-BIP |
TAACCCTCAAAAAGAGATGGCAACAAACAA(...) |
25635 - 25654 | ORF3a |
CAACTTGCTGTTGTTGTTTG |
25651-25674 | 95.83 |
100.00 |
99.92 |
48 |
CoV2ID361
Raw data
Min-max
|
LAMP loop forward primer |
ORF3a-B-LF |
ACAATAAGCCATCCGAAAGGGA |
25514 - 25535 | ORF3a |
TCCCTTTCGGATGGCTTATTGT |
25585-25606 | 95.45 |
80.00 |
99.91 |
48 |
CoV2ID362
Raw data
Min-max
|
LAMP loop backward primer |
ORF3a-B-LB |
CACTCTCCAAGGGTGTTCACT |
25607 - 25627 | ORF3a |
CACTCTCCAAGGGTGTTCACT |
25678-25698 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID363
Raw data
Min-max
|
LAMP forward inner primer |
GENE-N-T7-FIP |
TCTGGCCCAGTTCCTAGGTAGTTAATACGA(...) |
28545 - 28563 | N |
CCAGACGAATTCGTGGTGG |
28676-28697 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID364
Raw data
Min-max
|
LAMP forward inner primer |
ORF7-T7-FIP |
TCCAGAAGAGCAAGGTTCTTTTAAATAATA(...) |
27430 - 27451 | ORF7 |
GCTACTTGTGAGCTTTATCACT |
27554-27578 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID365
Raw data
Min-max
|
LAMP forward inner primer |
ORF3a-A-T7-FIP |
GTTCTTCAGGCTCATCAACAATTTTTAATA(...) |
26037 - 26059 | ORF3a |
CTCAACTCAATTGAGTACAGACA |
26166-26190 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID366
Raw data
Min-max
|
gRNA |
Schermer_Orf1ab |
GATTTAGACTACCCCAAAAACGAAGGGGAC(...) |
6510 - 6537 | ORF1ab |
ATAGTTTAAAAATTACAGAAGAGGTTGG |
6552-6579 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID367
Raw data
Min-max
|
gRNA |
Schermer_S Gene |
GATTTAGACTACCCCAAAAACGAAGGGGAC(...) |
22323 - 22350 | S |
CTTCTTCAGGTTGGACAGCTGGTGCTGC |
22394-22421 | 0.00 |
0.00 |
92.93 |
48 |
CoV2ID368
Raw data
Min-max
|
gRNA |
Schermer_Gene-N |
GATTTAGACTACCCCAAAAACGAAGGGGAC(...) |
28626 - 28653 | N |
AAGCTGGACTTCCCTATGGTGCTAACAA |
28697-28724 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID369
Raw data
Min-max
|
gRNA |
Schermer_Orf7 |
GATTTAGACTACCCCAAAAACGAAGGGGAC(...) |
27509 - 27535 | ORF7 |
CATACGAGGGCAATTCACCATTTCATCC |
27580-27607 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID370
Raw data
Min-max
|
gRNA |
Schermer_Orf3 |
GATTTAGACTACCCCAAAAACGAAGGGGAC(...) |
26107 - 26134 | ORF3 |
GAGCCTGAAGAACATGTCCAAATTCACA |
26178-26205 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID371
Raw data
Min-max
|
RPA forward primer |
Orf1ab-Fw_v1 |
GAAATTAATACGACTCACTATAGGGCGAAG(...) |
6472 - 6501 | ORF1ab |
CGAAGTTGTAGGAGACATTATACTTAAACC |
6514-6543 | 96.67 |
80.00 |
99.94 |
48 |
CoV2ID372
Raw data
Min-max
|
RPA reverse primer |
Orf1ab-Rev_v1 |
TAGTAAGACTAGAATTGTCTACATAAGCAG(...) |
6554 - 6584 | ORF1ab |
GCTGCTTATGTAGACAATTCTAGTCTTACT(...) |
6596-6626 | 100.00 |
100.00 |
100.00 |
48 |
CoV2ID373
Raw data
Min-max
|
RPA forward primer |
S-RPA-Fw_v1 |
GAAATAATACGACTCACTATAGGGAGGTTT(...) |
22271 - 22300 | S |
AGGTTTCAAACTTTACTTGCTTTACATAGA |
22342-22371 | 0.00 |
0.00 |
96.26 |
48 |
CoV2ID374
Raw data
Min-max
|
RPA reverse primer |
S-RPA-Rev_v1 |
TCCTAGGTTGAAGATAACCCACATAATAAG |
22353 - 22382 | S |
CTTATTATGTGGGTTATCTTCAACCTAGGA |
22424-22453 | 0.00 |
0.00 |
92.67 |
48 |
CoV2ID375
Raw data
Min-max
|
PCR primer forward |
Li_orf1ab_F |
TGATGATACTCTCTGACGATGCTGT |
15704 - 15728 | ORF1ab |
TGATGATACTCTCTGACGATGCTGT |
15754-15778 | 100.00 |
100.00 |
100.00 |
49 |
CoV2ID376
Raw data
Min-max
|
PCR primer reverse |
Li_orf1ab_R |
CTCAGTCCAACATTTTGCTTCAGA |
15823 - 15846 | ORF1ab |
TCTGAAGCAAAATGTTGGACTGAG |
15875-15898 | 0.00 |
0.00 |
98.11 |
49 |
CoV2ID377
Raw data
Min-max
|
PCR Probe |
Li_orf1ab_P |
ATGCATCTCAAGGTCTAGTG |
15749 - 15768 | ORF1ab |
ATGCATCTCAAGGTCTAGTG |
15799-15818 | 100.00 |
100.00 |
100.00 |
49 |
CoV2ID378
Raw data
Min-max
|
PCR primer forward |
BTstin_ORF1ab_F |
GGATCAAGAATCCTTTGGTGG |
13213 - 13233 | ORF1ab |
GGATCAAGAATCCTTTGGTGG |
13263-13283 | 90.48 |
100.00 |
99.82 |
50 |
CoV2ID379
Raw data
Min-max
|
PCR primer reverse |
BTstin_ORF1ab_R |
GTCACAAAATCCTTTAGGATTTGGA |
13273 - 13297 | ORF1ab |
TCCAAATCCTAAAGGATTTTGTGAC |
13323-13347 | 100.00 |
100.00 |
100.00 |
50 |
CoV2ID380
Raw data
Min-max
|
PCR Probe |
BTstin_ORF1ab_P |
CATCGTGTTGTCTGTACTGCCGTTGCC |
13236 - 13262 | ORF1ab |
CATCGTGTTGTCTGTACTGCCGTTGCC |
13286-13312 | 100.00 |
100.00 |
100.00 |
50 |
CoV2ID381
Raw data
Min-max
|
PCR primer forward |
WHCV-F1 |
CCAGGTAACAAACCAACCAACTT |
20 -42 | - |
CCAGGTAACAAACCAACCAACTT |
32-54 | 0.00 |
0.00 |
81.54 |
51 |
CoV2ID382
Raw data
Min-max
|
PCR primer reverse |
WHCV-R1 |
GGCAACCAACATAAGAGAACACAC |
1491 - 1514 | ORF1ab |
GTGTGTTCTCTTATGTTGGTTGCC |
1527-1550 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID383
Raw data
Min-max
|
PCR primer forward |
WHCV-F2 |
CAACCAAATGTGCCTTTCAACTC |
1201 - 1223 | ORF1ab |
CAACCAAATGTGCCTTTCAACTC |
1213-1235 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID384
Raw data
Min-max
|
PCR primer reverse |
WHCV-R2 |
CACAGTGTCATCACCAAAAGTAACCT |
2730 - 2755 | ORF1ab |
AGGTTACTTTTGGTGATGACACTGTG |
2772-2797 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID385
Raw data
Min-max
|
PCR primer forward |
WHCV-F3 |
TGTCACGCACTCAAAGGGATT |
2392 - 2412 | ORF1ab |
TGTCACGCACTCAAAGGGATT |
2434-2454 | 95.24 |
80.00 |
99.91 |
51 |
CoV2ID386
Raw data
Min-max
|
PCR primer reverse |
WHCV-R3 |
GACAGCTAAGTAGACATTTGTGCGAA |
3771 - 3796 | ORF1ab |
TTCGCACAAATGTCTACTTAGCTGTC |
3813-3838 | 96.15 |
100.00 |
99.93 |
51 |
CoV2ID387
Raw data
Min-max
|
PCR primer forward |
WHCV-F4 |
ATGCCATGCAAGTTGAATCTGAT |
3507 - 3529 | ORF1ab |
ATGCCATGCAAGTTGAATCTGAT |
3549-3571 | 95.65 |
100.00 |
99.92 |
51 |
CoV2ID388
Raw data
Min-max
|
PCR primer reverse |
WHCV-R4 |
TGCGTGTGGAGGTTAATGTTGT |
4989 - 5010 | ORF1ab |
ACAACATTAACCTCCACACGCA |
5031-5052 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID389
Raw data
Min-max
|
PCR primer forward |
WHCV-F5 |
GATCTCTCAAAGTGCCAGCTACAGT |
4665 - 4689 | ORF1ab |
GATCTCTCAAAGTGCCAGCTACAGT |
4707-4731 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID390
Raw data
Min-max
|
PCR primer reverse |
WHCV-R5 |
TTATAATCAATAGCCACCACATCACC |
6158 - 6183 | ORF1ab |
GGTGATGTGGTGGCTATTGATTATAA |
6200-6225 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID391
Raw data
Min-max
|
PCR primer forward |
WHCV-F6 |
AGAAACTTTGTATTGCATAGACGGTG |
5791 - 5816 | ORF1ab |
AGAAACTTTGTATTGCATAGACGGTG |
5833-5858 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID392
Raw data
Min-max
|
PCR primer reverse |
WHCV-R6 |
ACCAGTACAGTAAGAAGGCATGCC |
7037 - 7060 | ORF1ab |
GGCATGCCTTCTTACTGTACTGGT |
7079-7102 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID393
Raw data
Min-max
|
PCR primer forward |
WHCV-F7 |
GTTTAGCTGCTGTTAATAGTGTCCCTT |
6642 - 6668 | ORF1ab |
GTTTAGCTGCTGTTAATAGTGTCCCTT |
6684-6710 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID394
Raw data
Min-max
|
PCR primer reverse |
WHCV-R7 |
TGCAACTTCCGCACTATCACC |
8006 - 8026 | ORF1ab |
GGTGATAGTGCGGAAGTTGCA |
8053-8073 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID395
Raw data
Min-max
|
PCR primer forward |
WHCV-F8 |
TCCTACTGACCAGTCTTCTTACATCGT |
7711 - 7737 | ORF1ab |
TCCTACTGACCAGTCTTCTTACATCGT |
7758-7784 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID396
Raw data
Min-max
|
PCR primer reverse |
WHCV-R8 |
TTTCACAAGTGCCGTGCCTAC |
9216 - 9236 | ORF1ab |
GTAGGCACGGCACTTGTGAAA |
9264-9284 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID397
Raw data
Min-max
|
PCR primer forward |
WHCV-F9 |
GGTTTGCCTGGCACGATATTAC |
8867 - 8888 | ORF1ab |
GGTTTGCCTGGCACGATATTAC |
8915-8936 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID398
Raw data
Min-max
|
PCR primer reverse |
WHCV-R9 |
ACTTAGGTGTCTTAGGATTGGCTGTAT |
10329 - 10355 | ORF1ab |
ATACAGCCAATCCTAAGACACCTAAGT |
10377-10403 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID399
Raw data
Min-max
|
PCR primer forward |
WHCV-F10 |
TTGTCATCTCGCAAAGGCTCT |
9958 - 9978 | ORF1ab |
TTGTCATCTCGCAAAGGCTCT |
10006-10026 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID400
Raw data
Min-max
|
PCR primer reverse |
WHCV-R10 |
GAGATTATAAGAGCCCACATGGAAA |
11457 - 11481 | ORF1ab |
TTTCCATGTGGGCTCTTATAATCTC |
11505-11529 | 0.00 |
0.00 |
96.26 |
51 |
CoV2ID401
Raw data
Min-max
|
PCR primer forward |
WHCV-F11 |
GCTATGGGTATTATTGCTATGTCTGCT |
11108 - 11134 | ORF1ab |
GCTATGGGTATTATTGCTATGTCTGCT |
11156-11182 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID402
Raw data
Min-max
|
PCR primer reverse |
WHCV-R11 |
TGGATTTCCCACAATGCTGAT |
12541 - 12561 | ORF1ab |
ATCAGCATTGTGGGAAATCCA |
12589-12609 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID403
Raw data
Min-max
|
PCR primer forward |
WHCV-F12 |
CTGATCAAGCTATGACCCAAATGT |
12279 - 12302 | ORF1ab |
CTGATCAAGCTATGACCCAAATGT |
12327-12350 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID404
Raw data
Min-max
|
PCR primer reverse |
WHCV-R12 |
GCAACAGCTGGACAATCCTTAAGT |
13707 - 13730 | ORF1ab |
ACTTAAGGATTGTCCAGCTGTTGC |
13757-13780 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID405
Raw data
Min-max
|
PCR primer forward |
WHCV-F13 |
TCTGCGGTATGTGGAAAGGTTAT |
13380 - 13402 | ORF1ab |
TCTGCGGTATGTGGAAAGGTTAT |
13430-13452 | 91.30 |
100.00 |
99.84 |
51 |
CoV2ID406
Raw data
Min-max
|
PCR primer reverse |
WHCV-R13 |
GTCAGCAGCATACACAAGTAATTCCT |
14546 - 14571 | ORF1ab |
AGGAATTACTTGTGTATGCTGCTGAC |
14596-14621 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID407
Raw data
Min-max
|
PCR primer forward |
WHCV-F14 |
AGGGCTTTAACTGCAGAGTCACAT |
14185 - 14208 | ORF1ab |
AGGGCTTTAACTGCAGAGTCACAT |
14235-14258 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID408
Raw data
Min-max
|
PCR primer reverse |
WHCV-R14 |
GCGGACATACTTATCGGCAATT |
15582 - 15603 | ORF1ab |
AATTGCCGATAAGTATGTCCGC |
15632-15653 | 90.91 |
80.00 |
99.83 |
51 |
CoV2ID409
Raw data
Min-max
|
PCR primer forward |
WHCV-F15 |
TCAATAGCCGCCACTAGAGGAG |
15172 - 15193 | ORF1ab |
TCAATAGCCGCCACTAGAGGAG |
15222-15243 | 0.00 |
0.00 |
98.03 |
51 |
CoV2ID410
Raw data
Min-max
|
PCR primer reverse |
WHCV-R15 |
TCACCAGCATTTGTCCAGTCAC |
16571 - 16592 | ORF1ab |
GTGACTGGACAAATGCTGGTGA |
16642-16655 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID411
Raw data
Min-max
|
PCR primer forward |
WHCV-F16 |
TTGGGGCTTGTGTTCTTTGC |
16241 - 16260 | ORF1ab |
TTGGGGCTTGTGTTCTTTGC |
16293-16312 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID412
Raw data
Min-max
|
PCR primer reverse |
WHCV-R16 |
CAAGCAGGGTTACGTGTAAGGAAT |
17730 - 17753 | ORF1ab |
ATTCCTTACACGTAACCCTGCTTG |
17793-17816 | 95.83 |
100.00 |
99.41 |
51 |
CoV2ID413
Raw data
Min-max
|
PCR primer forward |
WHCV-F17 |
TGTCAATGCCAGATTACGTGCT |
17394 - 17415 | ORF1ab |
TGTCAATGCCAGATTACGTGCT |
17457-17478 | 95.45 |
100.00 |
99.91 |
51 |
CoV2ID414
Raw data
Min-max
|
PCR primer reverse |
WHCV-R17 |
TAACAAAGCACTCGTGGACAGC |
18880 - 18901 | ORF1ab |
GCTGTCCACGAGTGCTTTGTTA |
18943-18964 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID415
Raw data
Min-max
|
PCR primer forward |
WHCV-F18 |
TATGGGCACATGGCTTTGAGT |
18593 - 18613 | ORF1ab |
TATGGGCACATGGCTTTGAGT |
18656-18676 | 0.00 |
0.00 |
98.02 |
51 |
CoV2ID416
Raw data
Min-max
|
PCR primer reverse |
WHCV-R18 |
TAAGAACACCATTACGGGCATTT |
20025 - 20047 | ORF1ab |
AAATGCCCGTAATGGTGTTCTTA |
20088-20110 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID417
Raw data
Min-max
|
PCR primer forward |
WHCV-F19 |
TTGATGGACAACAGGGTGAAGTAC |
19664 - 19687 | ORF1ab |
TTGATGGACAACAGGGTGAAGTAC |
19727-19750 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID418
Raw data
Min-max
|
PCR primer reverse |
WHCV-R19 |
CGAAGTGTCCCATGAGCTTATAAA |
21197 - 21220 | ORF1ab |
TTTATAAGCTCATGGGACACTTCG |
21265-21288 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID419
Raw data
Min-max
|
PCR primer forward |
WHCV-F20 |
AGGAGTTGCACCAGGTACAGCT |
20886 - 20907 | ORF1ab |
AGGAGTTGCACCAGGTACAGCT |
20954-20975 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID420
Raw data
Min-max
|
PCR primer reverse |
WHCV-R20 |
ACCCACATAATAAGCTGCAGCAC |
22344 - 22366 | S |
GTGCTGCAGCTTATTATGTGGGT |
22415-22437 | 0.00 |
0.00 |
92.67 |
51 |
CoV2ID421
Raw data
Min-max
|
PCR primer forward |
WHCV-F21 |
CTATTAATTTAGTGCGTGATCTCCCTC |
22188 - 22214 | S |
CTATTAATTTAGTGCGTGATCTCCCTC |
22259-22285 | 0.00 |
0.00 |
96.26 |
51 |
CoV2ID422
Raw data
Min-max
|
PCR primer reverse |
WHCV-R21 |
AAATTTGTGGGTATGGCAATAGAGTTA |
23689 - 23715 | S |
TAACTCTATTGCCATACCCACAAATTT |
23760-23786 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID423
Raw data
Min-max
|
PCR primer forward |
WHCV-F22 |
ACTTACTCCTACTTGGCGTGTTTATTC |
23446 - 23472 | S |
ACTTACTCCTACTTGGCGTGTTTATTC |
23517-23543 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID424
Raw data
Min-max
|
PCR primer reverse |
WHCV-R22 |
GCATTAATGCCAGAGATGTCACC |
25061 - 25083 | S |
GGTGACATCTCTGGCATTAATGC |
25132-25154 | 0.00 |
0.00 |
96.10 |
51 |
CoV2ID425
Raw data
Min-max
|
PCR primer forward |
WHCV-F23 |
CTATCATCTTATGTCCTTCCCTCAGTC |
24700 - 24726 | S |
CTATCATCTTATGTCCTTCCCTCAGTC |
24771-24797 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID426
Raw data
Min-max
|
PCR primer reverse |
WHCV-R23 |
TAGTCGTCGTCGGTTCATCATAAAT |
26179 - 26203 | ORF3a |
ATTTATGATGAACCGACGACGACTA |
26250-26274 | 36.00 |
0.00 |
98.79 |
51 |
CoV2ID427
Raw data
Min-max
|
PCR primer forward |
WHCV-F24 |
TACTTCAGGTGATGGCACAACAA |
25899 - 25921 | ORF3a |
TACTTCAGGTGATGGCACAACAA |
25970-25992 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID428
Raw data
Min-max
|
PCR primer reverse |
WHCV-R24 |
AAGCTCACAAGTAGCGAGTGTTATCA |
27419 - 27444 | ORF7a |
TGATAACACTCGCTACTTGTGAGCTT |
27490-27515 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID429
Raw data
Min-max
|
PCR primer forward |
WHCV-F25 |
CGTGTAGCAGGTGACTCAGGTTT |
27078 - 27100 | M |
CGTGTAGCAGGTGACTCAGGTTT |
27149-27171 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID430
Raw data
Min-max
|
PCR primer reverse |
WHCV-R25 |
TACCGTCACCACCACGAATTC |
28551 - 28571 | N |
GAATTCGTGGTGGTGACGGTA |
28622-28642 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID431
Raw data
Min-max
|
PCR primer forward |
WHCV-F26 |
GGACCCCAAAATCAGCGAAAT |
28286 - 28306 | N |
GGACCCCAAAATCAGCGAAAT |
28357-28377 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID432
Raw data
Min-max
|
PCR primer reverse |
WHCV-R26 |
AAAATCACATGGGGATAGCACTACT |
29824 - 29848 | - |
AGTAGTGCTATCCCCATGTGATTTT |
29895-29919 | 0.00 |
0.00 |
87.94 |
51 |
CoV2ID433
Raw data
Min-max
|
PCR primer forward |
S1423F |
GCCGGTAGCACACCTTGTAA |
22985 - 23004 | S |
GCCGGTAGCACACCTTGTAA |
23056-23075 | 0.00 |
0.00 |
96.26 |
51 |
CoV2ID434
Raw data
Min-max
|
PCR primer reverse |
S1736R2 |
GGATCACGGACAGCATCAGT |
23279 - 23298 | S |
ACTGATGCTGTCCGTGATCC |
23350-23369 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID435
Raw data
Min-max
|
PCR primer forward |
S2620F |
ACTTCTGCACTGTTAGCGGG |
24182 - 24201 | S |
ACTTCTGCACTGTTAGCGGG |
24253-24272 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID436
Raw data
Min-max
|
PCR primer reverse |
S3174R2 |
ATGAGGTGCTGACTGAGGGA |
24717 - 24736 | S |
TCCCTCAGTCAGCACCTCAT |
24788-24807 | 100.00 |
100.00 |
100.00 |
51 |
CoV2ID437
Raw data
Min-max
|
PCR primer reverse |
S3240R1 |
GGCAGGAGCAGTTGTGAAGT |
24783 - 24802 | S |
ACTTCACAACTGCTCCTGCC |
24854-24873 | 0.00 |
0.00 |
98.11 |
51 |
CoV2ID438
Raw data
Min-max
|
RACE primer |
5-GSP |
CCACATGAGGGACAAGGACACCAAGTG |
573 - 599 | ORF1ab |
CACTTGGTGTCCTTGTCCCTCATGTGG |
585-611 | 77.78 |
100.00 |
99.58 |
51 |
CoV2ID439
Raw data
Min-max
|
RACE primer |
5-GSPn |
CATGACCATGAGGTGCAGTTCGAGC |
491 - 515 | ORF1ab |
GCTCGAACTGCACCTCATGGTCATG |
503-527 | 0.00 |
0.00 |
96.87 |
51 |
CoV2ID440
Raw data
Min-max
|
RACE primer |
3-GSP |
TGTCGCGCATTGGCATGGAAGTCACACC |
29223 - 29250 | N |
TGTCGCGCATTGGCATGGAAGTCACACC |
29294-29321 | 96.43 |
100.00 |
99.93 |
51 |
CoV2ID441
Raw data
Min-max
|
RACE primer |
3-GSPn |
CTCAAGCCTTACCGCAGAGACAGAAG |
29409 - 29434 | N |
CTCAAGCCTTACCGCAGAGACAGAAG |
29480-29505 | 0.00 |
0.00 |
96.26 |
51 |
CoV2ID442
Raw data
Min-max
|
Target Generation primer |
nsp10-Std-T7-F |
TAATACGACTCACTATAGGGGTGGGGGACA(...) |
13122 - 13141 | ORF1ab |
GTGGGGGACAACCAATCACT |
13172-13191 | 100.00 |
100.00 |
100.00 |
52 |
CoV2ID443
Raw data
Min-max
|
Target Generation primer |
nsp10-Std-R |
AGACGAGGTCTGCCATTGTG |
13806 - 13825 | ORF1ab |
CACAATGGCAGACCTCGTCT |
13856-13875 | 100.00 |
100.00 |
100.00 |
52 |
CoV2ID444
Raw data
Min-max
|
Target Generation primer |
RdRp-Std-T7-F |
TAATACGACTCACTATAGGGAATAGAGCTC(...) |
15093 - 15113 | ORF1ab |
GAATAGAGCTCGCACCGTAGC |
15143-15163 | 0.00 |
0.00 |
98.11 |
52 |
CoV2ID445
Raw data
Min-max
|
Target Generation primer |
RdRp-Std-R |
CATCTACAAAACAGCCGGCC |
15957 - 15976 | ORF1ab |
GGCCGGCTGTTTTGTAGATG |
16009-16028 | 0.00 |
0.00 |
98.11 |
52 |
CoV2ID446
Raw data
Min-max
|
Target Generation primer |
nsp14-Std-T7-F |
TAATACGACTCACTATAGGGTAGTGCTAAA(...) |
18447 - 18466 | ORF1ab |
TAGTGCTAAACCACCGCCTG |
18510-18529 | 0.00 |
0.00 |
98.11 |
52 |
CoV2ID447
Raw data
Min-max
|
Target Generation primer |
nsp14-Std-R |
AACTGCCACCATCACAACCA |
19275 - 19294 | ORF1ab |
TGGTTGTGATGGTGGCAGTT |
19338-19357 | 0.00 |
0.00 |
98.11 |
52 |
CoV2ID448
Raw data
Min-max
|
Target Generation primer |
E-Std-T7-F |
TAATACGACTCACTATAGGGGCGTGCCTTT(...) |
26207 - 26226 | E |
GCGTGCCTTTGTAAGCACAA |
26278-26297 | 100.00 |
100.00 |
100.00 |
52 |
CoV2ID449
Raw data
Min-max
|
Target Generation primer |
E-Std-R |
GGCAGGTCCTTGATGTCACA |
26997 - 27016 | E |
TGTGACATCAAGGACCTGCC |
27068-27087 | 100.00 |
100.00 |
100.00 |
52 |
CoV2ID450
Raw data
Min-max
|
Target Generation primer |
N-Std-T7-F |
TAATACGACTCACTATAGGGGAATTGTGCG(...) |
28068 - 28087 | N |
GAATTGTGCGTGGATGAGGC |
28139-28158 | 95.00 |
100.00 |
99.72 |
52 |
CoV2ID451
Raw data
Min-max
|
Target Generation primer |
N-Std-R |
TGTCTCTGCGGTAAGGCTTG |
29411 - 29430 | N |
CAAGCCTTACCGCAGAGACA |
29482-29501 | 0.00 |
0.00 |
96.26 |
52 |
CoV2ID452
Raw data
Min-max
|
LAMP outer forward primer |
Rohaim_ORF1ab_F3 |
CCGCCACTAGAGGAGCTACT |
15179 - 15198 | ORF1ab |
CCGCCACTAGAGGAGCTACT |
15229-15248 | 0.00 |
0.00 |
98.02 |
53 |
CoV2ID453
Raw data
Min-max
|
LAMP outer backward primer |
Rohaim_ORF1ab_B3 |
TGTTGTAGCTTGTCACAC |
15373 - 15390 | ORF1ab |
TGTTGTAGCTTGTCACAC |
15423-15440 | 100.00 |
100.00 |
100.00 |
53 |
CoV2ID454
Raw data
Min-max
|
LAMP forward inner primer |
Rohaim_ORF1ab_FIP |
ATTGGAACAAGCAAATTCTATTATAGTGAT(...) |
15255 - 15280 | ORF1ab |
TTATAGTGATGTAGAAAACCCTCACC |
15305-15330 | 0.00 |
0.00 |
98.11 |
53 |
CoV2ID455
Raw data
Min-max
|
LAMP backward inner primer |
Rohaim_ORF1ab_BIP |
TATGGGTTGGGATTATCCTAAATGTGCCTC(...) |
15340 - 15358 | ORF1ab |
GCCTCACTTGTTCTTGCTC |
15332-15357 | 0.00 |
0.00 |
98.11 |
53 |
CoV2ID456
Raw data
Min-max
|
LAMP loop forward primer |
Rohaim_ORF1ab_LF |
GGTTGGCACAACATGTTAAAAAC |
15229 - 15251 | ORF1ab |
GGTTGGCACAACATGTTAAAAAC |
15279-15301 | 0.00 |
0.00 |
98.11 |
53 |
CoV2ID457
Raw data
Min-max
|
LAMP loop backward primer |
Rohaim_ORF1ab_LB |
AGCCATGCCTAACATGCTTAG |
15312 - 15332 | ORF1ab |
AGCCATGCCTAACATGCTTAG |
15362-15382 | 0.00 |
0.00 |
97.94 |
53 |
CoV2ID458
Raw data
Min-max
|
PCR primer forward |
Rohaim_RdRP_F |
GTGAAATGGTCATGTGTGGCGG |
15431 - 15452 | ORF1ab |
GTGAAATGGTCATGTGTGGCGG |
15481-15502 | 100.00 |
100.00 |
100.00 |
53 |
CoV2ID459
Raw data
Min-max
|
PCR primer reverse |
Rohaim_RdRP_R |
TATGCTAATAGTGTTTTTAACATTTG |
15505 - 15530 | ORF1ab |
TATGCTAATAGTGTTTTTAACATTTG |
15555-15580 | 100.00 |
100.00 |
100.00 |
53 |
CoV2ID460
Raw data
Min-max
|
RPA forward primer |
S-RPA-Forward_v1 |
GAAATTAATACGACTCACTATAGGGAGGTT(...) |
22271 - 22300 | S |
AGGTTTCAAACTTTACTTGCTTTACATAGA |
22342-22371 | 0.00 |
0.00 |
96.26 |
54 |
CoV2ID461
Raw data
Min-max
|
RPA forward primer |
Orf1ab-RPA-Forward_v1 |
GAAATTAATACGACTCACTATAGGGCGAAG(...) |
6472 - 6501 | ORF1ab |
CGAAGTTGTAGGAGACATTATACTTAAACC |
6514-6543 | 96.67 |
80.00 |
99.94 |
54 |
CoV2ID462
Raw data
Min-max
|
sgRNA |
nCoV-RdRp-sgRNA R |
ATGTGTGGCGGTTCACTATATGTatctaca(...) |
15442 - 15464 | RdRp |
ATGTGTGGCGGTTCACTATATGT |
15492-15514 | 100.00 |
100.00 |
100.00 |
55 |
CoV2ID463
Raw data
Min-max
|
sgRNA |
nCoV-ORF1b-sgRNA R |
TGGTTGCTTTGTAGGTTACCTGTatctaca(...) |
18787 - 18809 | ORF1b |
ACAGGTAACCTACAAAGCAACCA |
18849-18872 | 0.00 |
0.00 |
98.11 |
55 |
CoV2ID464
Raw data
Min-max
|
sgRNA |
nCOV-ORF1ab-sgRNA R |
GTCTGTACCGTCTGCGGTATGTGatctaca(...) |
13370 - 13392 | ORF1ab |
GTCTGTACCGTCTGCGGTATGTG |
13420-13442 | 95.65 |
80.00 |
99.92 |
55 |
CoV2ID465
Raw data
Min-max
|
PCR primer forward |
SARS-CoV-2_IBS_RdRP1_F |
CATGTGTGGCGGTTCACTAT |
15441 - 15460 | RdRp |
CATGTGTGGCGGTTCACTAT |
15491-15510 | 100.00 |
100.00 |
100.00 |
56 |
CoV2ID466
Raw data
Min-max
|
PCR primer reverse |
SARS-CoV-2_IBS_RdRP1_R |
TGCATTAACATTGGCCGTGA |
15539 - 15558 | RdRp |
TCACGGCCAATGTTAATGCA |
15589-15608 | 100.00 |
100.00 |
100.00 |
56 |
CoV2ID467
Raw data
Min-max
|
PCR primer forward |
SARS-CoV-2_IBS_S1_F |
CTACATGCACCAGCAACTGT |
23114 - 23133 | S |
CTACATGCACCAGCAACTGT |
23185-23204 | 0.00 |
0.00 |
96.26 |
56 |
CoV2ID468
Raw data
Min-max
|
PCR primer reverse |
SARS-CoV-2_IBS_S1_R |
CACCTGTGCCTGTTAAACCA |
23194 - 23213 | S |
TGGTTTAACAGGCACAGGTG |
23265-23284 | 0.00 |
0.00 |
98.11 |
56 |
CoV2ID469
Raw data
Min-max
|
PCR primer forward |
SARS-CoV-2_IBS_E1_F |
TTCGGAAGAGACAGGTACGTT |
26259 - 26279 | E |
TTCGGAAGAGACAGGTACGTT |
26330-26350 | 100.00 |
100.00 |
100.00 |
56 |
CoV2ID470
Raw data
Min-max
|
PCR primer reverse |
SARS-CoV-2_IBS_E1_R |
CACACAATCGATGCGCAGTA |
26349 - 26365 | E |
TGCGCTTCGATTGTGTG |
26417-26436 | 95.00 |
100.00 |
99.91 |
56 |
CoV2ID471
Raw data
Min-max
|
PCR primer forward |
SARS-CoV-2_IBS_N1_F |
CAATGCTGCAATCGTGCTAC |
28732 - 28751 | N |
CAATGCTGCAATCGTGCTAC |
28803-28822 | 100.00 |
100.00 |
100.00 |
56 |
CoV2ID472
Raw data
Min-max
|
PCR primer reverse |
SARS-CoV-2_IBS_N1_R |
GTTGCGACTACGTGATGAGG |
28830 - 28849 | N |
CCTCATCACGTAGTCGCAAC |
28901-28920 | 100.00 |
100.00 |
100.00 |
56 |
CoV2ID473
Raw data
Min-max
|
PCR primer forward |
SARS-CoV-2_IBS_RdRP2_F |
AGAATAGAGCTCGCACCGTA |
15092 - 15111 | RdRp |
AGAATAGAGCTCGCACCGTA |
15142-15161 | 0.00 |
0.00 |
98.11 |
56 |
CoV2ID474
Raw data
Min-max
|
PCR primer reverse |
SARS-CoV-2_IBS_RdRP2_R |
CTCCTCTAGTGGCGGCTATT |
15174 -15193 | RdRp |
AATAGCCGCCACTAGAGGAG |
15224-15243 | 0.00 |
0.00 |
98.02 |
56 |
CoV2ID475
Raw data
Min-max
|
PCR primer forward |
SARS-CoV-2_IBS_RdRP3_F |
TCTGTGATGCCATGCGAAAT |
14015 - 14034 | RdRp |
TCTGTGATGCCATGCGAAAT |
14065-14084 | 100.00 |
100.00 |
100.00 |
56 |
CoV2ID476
Raw data
Min-max
|
PCR primer reverse |
SARS-CoV-2_IBS_RdRP3_R |
ACTACCTGGCGTGGTTTGTA |
14108 - 14127 | RdRp |
TACAAACCACGCCAGGTAGT |
14158-14177 | 100.00 |
100.00 |
100.00 |
56 |
CoV2ID477
Raw data
Min-max
|
PCR primer forward |
SARS-CoV-2_IBS_S2_F |
GCTGGTGCTGCAGCTTATTA |
22340 - 22359 | S |
GCTGGTGCTGCAGCTTATTA |
22411-22430 | 0.00 |
0.00 |
92.67 |
56 |
CoV2ID478
Raw data
Min-max
|
PCR primer reverse |
SARS-CoV-2_IBS_S2_R |
AGGGTCAAGTGCACAGTCTA |
22428 - 22447 | S |
TAGACTGTGCACTTGACCCT |
22499-22518 | 0.00 |
0.00 |
92.58 |
56 |
CoV2ID479
Raw data
Min-max
|
PCR primer forward |
SARS-CoV-2_IBS_E2_F |
TTCGGAAGAGACAGGTACGTTA |
26259 - 26280 | E |
TTCGGAAGAGACAGGTACGTTA |
26330-26351 | 100.00 |
100.00 |
100.00 |
56 |
CoV2ID480
Raw data
Min-max
|
PCR primer reverse |
SARS-CoV-2_IBS_E2_R |
AGCAGTACGCACACAATCG |
26356 - 26374 | E |
CGATTGTGTGCGTACTGCT |
26427-26445 | 100.00 |
100.00 |
100.00 |
56 |
CoV2ID481
Raw data
Min-max
|
PCR primer forward |
SARS-CoV-2_IBS_N2_F |
GCTGCAATCGTGCTACAACT |
28736 - 28755 | N |
GCTGCAATCGTGCTACAACT |
28807-28826 | 100.00 |
100.00 |
100.00 |
56 |
CoV2ID482
Raw data
Min-max
|
PCR primer reverse |
SARS-CoV-2_IBS_N2_R |
TGAACTGTTGCGACTACGTG |
28836 - 28855 | N |
CACGTAGTCGCAACAGTTCA |
28907-28926 | 95.00 |
100.00 |
99.63 |
56 |
CoV2ID483
Raw data
Min-max
|
PCR primer forward |
Yip_RdRp_OTter_F |
AGGTATTGGGAACCTGAGTTTTATGAGGCT(...) |
16180 - 16219 | RdRp |
AGGTATTGGGAACCTGAGTTTTATGAGGCT(...) |
16232-16271 | 37.50 |
100.00 |
98.82 |
57 |
CoV2ID484
Raw data
Min-max
|
PCR primer reverse |
Yip_RdRp_OTter_R |
ACCTGGAGCATTGCAAACATACGGATTAAC(...) |
16360 - 16398 | RdRp |
GTCTTGTCTGTTAATCCGTATGTTTGCAAT(...) |
16412-16450 | 100.00 |
100.00 |
100.00 |
57 |
CoV2ID485
Raw data
Min-max
|
PCR primer forward |
Yip_RdRp_Inner_F |
CGCATACAGTCTTRCAGGCT |
16220 - 16239 | RdRp |
CGCATACAGTCTTACAGGCT |
16272-16291 | 100.00 |
100.00 |
100.00 |
57 |
CoV2ID486
Raw data
Min-max
|
PCR primer reverse |
Yip_RdRp_Inner_R |
GTGTGATGTTGAWATGACATGGTC |
16330 - 16352 | RdRp |
GACCATGTCATATCAACATCACA |
16382-16404 | 100.00 |
100.00 |
100.00 |
57 |
CoV2ID487
Raw data
Min-max
|
PCR Probe |
Yip_RdRp_probe |
TTAAGATGTGGTGCTTGCATACGTAGAC |
16276 - 16303 | RdRp |
TTAAGATGTGGTGCTTGCATACGTAGAC |
16328-16355 | 100.00 |
100.00 |
100.00 |
57 |
CoV2ID488
Raw data
Min-max
|
PCR primer forward |
Yip_RdRp_OTter_F |
AATTGCACAATTTGCCCCCAGCGCTTCA |
29182 - 29209 | N |
AATTGCACAATTTGCCCCCAGCGCTTCA |
29253-29280 | 100.00 |
100.00 |
100.00 |
57 |
CoV2ID489
Raw data
Min-max
|
PCR primer reverse |
Yip_RdRp_OTter_R |
TGCGTCAATATGCTTATTCAGCAAAATGAC(...) |
29310 - 29350 | N |
TCAAAGATCAAGTCATTTTGCTGAATAAGC(...) |
29381-29421 | 100.00 |
100.00 |
100.00 |
57 |
CoV2ID490
Raw data
Min-max
|
PCR primer forward |
Yip_RdRp_Inner_F |
GCGTTCTTCGGAATGTCG |
29210 - 29227 | N |
GCGTTCTTCGGAATGTCG |
29281-29298 | 100.00 |
100.00 |
100.00 |
57 |
CoV2ID491
Raw data
Min-max
|
PCR primer reverse |
Yip_RdRp_Inner_R |
TTGGATCTTTGTCATCCAATTTG |
29284 - 29306 | N |
CAAATTGGATGACAAAGATCCAA |
29355-29377 | 91.30 |
100.00 |
99.76 |
57 |
CoV2ID492
Raw data
Min-max
|
PCR Probe |
Yip_RdRp_probe |
AACGTGGTTGACCTACACAGST |
29257 - 29278 | N |
AACGTGGTTGACCTACACAGGT |
29328-29347 | 100.00 |
100.00 |
100.00 |
57 |