Summary of conservation values per alignment


The table describes for each sequence alignment basic statistics and the top oligonucleotides considering the following measures of sequence conservation:
-PIS: percentage of identical sites
-3'PIS: percentage of identical sites in the last five nucleotides at the 3' end of oligonucleotide
-PPI: percentage of pairwise identity

Conservation measure CoV2ID_alig01 CoV2ID_alig02 CoV2ID_alig03
Global Statistics Sequences
Length
% Identical sites
% Pairwise identity
106
30016
62.40
99.40
3251
34908
88.60
99.96
7
38063
14.70
45.30
% of identical sites Average
Range
Top Primer or Probe
64.63
0.00-96.15
CoV2ID013
CoV2ID108
88.28
100.00-96.67
CoV2ID099

0.00
0-0
CoV2ID001
CoV2ID002
CoV2ID003
3' end % of identical sites Average
Range
Top Primer or Probe
65.10
0.00-80.00
CoV2ID002
CoV2ID013
CoV2ID115
88.97
100.00-80.00
CoV2ID003
CoV2ID004
CoV2ID007
0.00
0-0
CoV2ID001
CoV2ID002
CoV2ID003
% of pairwise identity Average
Range
Top Primer or Probe
99.26
100.00-99.93
CoV2ID013

99.94
100.00-99.99
CoV2ID007
CoV2ID013
CoV2ID015
52.37
28.57-94.29
CoV2ID102
CoV2ID105